Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B05
(580 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99437|VATO_HUMAN Vacuolar ATP synthase 21 kDa proteolip... 204 2e-52
sp|Q91V37|VATO_MOUSE Vacuolar ATP synthase 21 kDa proteolip... 202 4e-52
sp|P23968|VATO_YEAST Vacuolar ATP synthase 22 kDa proteolip... 164 1e-40
sp|O14046|VATO_SCHPO Probable vacuolar ATP synthase 20 kDa ... 156 4e-38
sp|P59229|VATL4_ARATH Vacuolar ATP synthase 16 kDa proteoli... 77 4e-14
sp|P68161|VATL_MESCR Vacuolar ATP synthase 16 kDa proteolip... 75 1e-13
sp|P59228|VATL2_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 1e-13
sp|P59227|VATL1_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 1e-13
sp|Q43434|VATL_GOSHI Vacuolar ATP synthase 16 kDa proteolip... 75 1e-13
sp|O24011|VATL_LYCES Vacuolar ATP synthase 16 kDa proteolip... 75 1e-13
>sp|Q99437|VATO_HUMAN Vacuolar ATP synthase 21 kDa proteolipid subunit (HATPL)
Length = 205
Score = 204 bits (518), Expect = 2e-52
Identities = 113/170 (66%), Positives = 126/170 (74%), Gaps = 3/170 (1%)
Frame = +2
Query: 38 FSQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEA 217
F ETSP++W+N+GIGL ISLSV+GAA GIY TGSSI+G GVK PRI+TKNLVSIIFCEA
Sbjct: 40 FLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEA 99
Query: 218 VAIYGIIMAIVISQNIKSF---DSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXX 388
VAIYGIIMAIVIS + F D K R N+ G+ MFG+GLTVGLSNL
Sbjct: 100 VAIYGIIMAIVISNMAEPFSATDPKAIGHR----NYHAGYSMFGAGLTVGLSNLFCGVCV 155
Query: 389 XXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGILQVAGTKMGD 538
AALAD+ N SLFVKILIVEIFGSAIGLFGVIV ILQ + KMGD
Sbjct: 156 GIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 205
>sp|Q91V37|VATO_MOUSE Vacuolar ATP synthase 21 kDa proteolipid subunit (23-kDa subunit of
V-ATPase)
Length = 205
Score = 202 bits (515), Expect = 4e-52
Identities = 111/167 (66%), Positives = 125/167 (74%)
Frame = +2
Query: 38 FSQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEA 217
F ETSP++W+N+GIGL ISLSV+GAA GIY TGSSI+G GVK PRI+TKNLVSIIFCEA
Sbjct: 40 FLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEA 99
Query: 218 VAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXX 397
VAIYGIIMAIVIS + F S + N+ G+ MFG+GLTVGLSNL
Sbjct: 100 VAIYGIIMAIVISNMAEPF-SATEPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIV 158
Query: 398 XXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGILQVAGTKMGD 538
AALAD+ N SLFVKILIVEIFGSAIGLFGVIV ILQ + KMGD
Sbjct: 159 GSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 205
>sp|P23968|VATO_YEAST Vacuolar ATP synthase 22 kDa proteolipid subunit
Length = 213
Score = 164 bits (416), Expect = 1e-40
Identities = 85/164 (51%), Positives = 114/164 (69%)
Frame = +2
Query: 20 DLTLVGFSQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVS 199
D+ F TSPY+WAN+GI LC+ LSV+GAA GI+ TGSS++GAGV+ PRI TKNL+S
Sbjct: 44 DINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLIS 103
Query: 200 IIFCEAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXX 379
IIFCE VAIYG+I+AIV S + A + N G+ +F +G+TVG SNL
Sbjct: 104 IIFCEVVAIYGLIIAIVFSSKL---TVATAENMYSKSNLYTGYSLFWAGITVGASNLICG 160
Query: 380 XXXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
AA++D+A+++LFVKIL++EIFGS +GL G+IVG+L
Sbjct: 161 IAVGITGATAAISDAADSALFVKILVIEIFGSILGLLGLIVGLL 204
>sp|O14046|VATO_SCHPO Probable vacuolar ATP synthase 20 kDa proteolipid subunit
Length = 199
Score = 156 bits (394), Expect = 4e-38
Identities = 83/158 (52%), Positives = 107/158 (67%)
Frame = +2
Query: 38 FSQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEA 217
F +TSPY W +GI C++ ++GAA GI+ G+SILG VK PRI+TKNL+SIIFCE
Sbjct: 36 FLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEV 95
Query: 218 VAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXX 397
VAIY +I+AIV S I D A F + ++ GF +F G+TVGL NL
Sbjct: 96 VAIYSLIIAIVFSAKIN--DINPAGF-YTKSHYYTGFALFWGGITVGLCNLICGVCVGIT 152
Query: 398 XXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
AALAD+ +ASLFVK+L+VEIFGS +GLFG+IVG+L
Sbjct: 153 GSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLL 190
Score = 35.8 bits (81), Expect = 0.079
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +2
Query: 11 KAIDLTLVGFSQETSPY-----LWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPR 175
K D+ GF ++ Y W I +GLC + G +GI TGSS A +
Sbjct: 110 KINDINPAGFYTKSHYYTGFALFWGGITVGLCNL--ICGVCVGI--TGSSAALADAQDAS 165
Query: 176 IRTKNLVSIIFCEAVAIYGIIMAIVISQNIKSF 274
+ K LV IF + ++G+I+ ++I F
Sbjct: 166 LFVKVLVVEIFGSVLGLFGLIVGLLIGGKASDF 198
>sp|P59229|VATL4_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (V-ATPase 16 kDa
proteolipid subunit 4)
Length = 166
Score = 76.6 bits (187), Expect = 4e-14
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Frame = +2
Query: 35 GFS-QETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFC 211
GFS ET+P+ + +G + S +GAA G +G + GV P + K++V ++
Sbjct: 5 GFSGDETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 63
Query: 212 EAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXX 391
+ IYG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 64 GVLGIYGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIG 115
Query: 392 XXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 116 IVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 155
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 65 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 244
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 94 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 153
Query: 245 IVIS 256
I++S
Sbjct: 154 IILS 157
>sp|P68161|VATL_MESCR Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P68162|VATL_BETVU Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 165
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 47 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 226
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 227 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 406
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 407 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 65 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 244
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 245 IVIS 256
I++S
Sbjct: 153 IILS 156
>sp|P59228|VATL2_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (V-ATPase 16 kDa
proteolipid subunit 2)
Length = 165
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 47 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 226
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 227 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 406
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 407 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 65 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 244
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 245 IVIS 256
I++S
Sbjct: 153 IILS 156
>sp|P59227|VATL1_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (V-ATPase 16
kDa proteolipid subunit 1/3/5)
Length = 164
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 47 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 226
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 227 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 406
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 67 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 118
Query: 407 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 119 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 65 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 244
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 92 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 151
Query: 245 IVIS 256
I++S
Sbjct: 152 IILS 155
>sp|Q43434|VATL_GOSHI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 165
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 47 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 226
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 227 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 406
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 407 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 65 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 244
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 245 IVIS 256
I++S
Sbjct: 153 IILS 156
>sp|O24011|VATL_LYCES Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 164
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 47 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 226
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 227 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 406
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 67 YGLIIAVIISTGI---NPKTKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 118
Query: 407 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 511
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 119 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Frame = +2
Query: 35 GFSQETSPYL----WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSI 202
G + +T Y +A++ GL L+ L A + I G + + A + P++ ++ +
Sbjct: 78 GINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILIL 137
Query: 203 IFCEAVAIYGIIMAIVIS 256
IF EA+A+YG+I+ I++S
Sbjct: 138 IFAEALALYGLIVGIILS 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,813,611
Number of Sequences: 369166
Number of extensions: 1181407
Number of successful extensions: 3346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)