Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B04
(763 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23588|IF4B_HUMAN Eukaryotic translation initiation fact... 63 1e-09
sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation fact... 61 4e-09
sp|P50532|SMC4_XENLA Structural maintenance of chromosome 4... 48 3e-05
sp|Q06852|SLAP1_CLOTM Cell surface glycoprotein 1 precursor... 47 6e-05
sp|Q50315|Y687_MYCPN Protein MPN687 (K05_orf250) 46 1e-04
sp|P35663|CYLC1_HUMAN Cylicin-1 (Cylicin I) (Multiple-band ... 45 3e-04
sp|Q09950|YSR2_CAEEL Hypothetical protein F59B10.2 in chrom... 44 5e-04
sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MA... 43 0.001
sp|Q5R5X0|PININ_PONPY Pinin 42 0.001
sp|P79149|PININ_CANFA Pinin 42 0.002
>sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B (eIF-4B)
Length = 611
Score = 62.8 bits (151), Expect = 1e-09
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 9/257 (3%)
Frame = +2
Query: 20 RNDDKALSDNSENWRRGTNRDTKSGSFNRRNQTMQDNSKPMPIVERSDPKDLVKE-TKKV 196
R DD++ S + R RD + Q + N KP E D + T+
Sbjct: 304 RRDDRSWSSRDDYSRDDYRRDDRGPP-----QRPKLNLKPRSTPEEDDSSASTSQSTRAA 358
Query: 197 SIFGDAKPVDTQSKDLEIEEKIAQQKKQLGDD------SKKSDDFTPSF--SRSQKRQTN 352
SIFG AKPVDT +++ E+EE++ +++++L ++ + PS+ +Q+R+ +
Sbjct: 359 SIFGGAKPVDTAAREREVEERLQKEQEKLQRQWNEPKLERRpreRHPSWRSEETQERERS 418
Query: 353 TTQNSATFDSKPEKSENRTKAISSTTKSNVSTFQRNEQLVKPSDSVKPEPSEPVKPDPQP 532
T + ++ S + S T + E P+ S P+P +P+K P P
Sbjct: 419 RTGSESSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPT-SKPPKPDQPLKVMPAP 477
Query: 533 APIPVNVWNERMKAKGLSPQAQVVNRNNSASKPGLDKSSLPQSLPTERIEPSPAEHHQAT 712
P N W +R Q+ + + S G + P + E P +
Sbjct: 478 PP-KENAWVKRSSNPPARSQSSDTEQQSPTSGGG-------KVAPAQPSEEGPGRKDE-- 527
Query: 713 CQPVGGGNNPINQSSPS 763
V G N P Q+ S
Sbjct: 528 -NKVDGMNAPKGQTGNS 543
>sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B (eIF-4B)
Length = 611
Score = 60.8 bits (146), Expect = 4e-09
Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 9/191 (4%)
Frame = +2
Query: 20 RNDDKALSDNSENWRRGTNRDTKSGSFNRRNQTMQDNSKPMPIVERSDPKDLVKETKKV- 196
R DD++ S + R RD + Q + N KP + D ++ +
Sbjct: 304 RRDDRSWSSRDDYSRDDYRRDDRGPP-----QRPRLNLKPRSAPKEDDASASTSQSSRAA 358
Query: 197 SIFGDAKPVDTQSKDLEIEEKI--AQQKKQLGDDSKKSD----DFTPSF--SRSQKRQTN 352
SIFG AKPVDT +++ E+EE++ Q+K Q D K D + PS+ +Q+R+ +
Sbjct: 359 SIFGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLDRRpreRHPSWRSEETQERERS 418
Query: 353 TTQNSATFDSKPEKSENRTKAISSTTKSNVSTFQRNEQLVKPSDSVKPEPSEPVKPDPQP 532
T + ++ S T+ S T + E P+ S P+P +P+K P P
Sbjct: 419 RTGSESSQTGASATSGRNTRRRESEKSLENETLNKEEDCHSPT-SKPPKPDQPLKVMPAP 477
Query: 533 APIPVNVWNER 565
P N W +R
Sbjct: 478 PP-KENAWVKR 487
>sp|P50532|SMC4_XENLA Structural maintenance of chromosome 4 (Chromosome-associated
protein C) (Chromosome assembly protein XCAP-C)
Length = 1290
Score = 47.8 bits (112), Expect = 3e-05
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 4/153 (2%)
Frame = +2
Query: 23 NDDKALSDNSENWRRGTNRDTK--SGSFNRRNQTMQDNSKPMPIVERSDPK--DLVKETK 190
+D + S + E + DTK S N +TM++ +K + VE+ K ++E +
Sbjct: 322 HDLQKRSRDKEAQKEKIQEDTKDISEKSNTLLETMKEKNKALKDVEKQLNKITKFIEENR 381
Query: 191 KVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLGDDSKKSDDFTPSFSRSQKRQTNTTQNSA 370
+ D + VDT+ K + K+ + +KQL D +K D+ + SQK T
Sbjct: 382 EKFTQLDLQDVDTREKLKHSKSKVKKLQKQLQKDKEKVDELKNVPANSQKIIAEETNKKD 441
Query: 371 TFDSKPEKSENRTKAISSTTKSNVSTFQRNEQL 469
+ + EK E + K + + K Q +++
Sbjct: 442 LLEKQKEKEEEKLKNVMDSLKKETQGLQEEKEV 474
>sp|Q06852|SLAP1_CLOTM Cell surface glycoprotein 1 precursor (Outer layer protein B)
(S-layer protein 1)
Length = 1664
Score = 47.0 bits (110), Expect = 6e-05
Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 1/183 (0%)
Frame = +2
Query: 218 PVDTQSKD-LEIEEKIAQQKKQLGDDSKKSDDFTPSFSRSQKRQTNTTQNSATFDSKPEK 394
P DT S + +E + D+ SD+ TPS + + T+T + T +P
Sbjct: 1142 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 1201
Query: 395 SENRTKAISSTTKSNVSTFQRNEQLVKPSDSVKPEPSEPVKPDPQPAPIPVNVWNERMKA 574
S+ T + T + + E+ + P+D+ EP+ +P P P P + +
Sbjct: 1202 SDEPTPSDEPTPSDEPTPSETPEEPI-PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1260
Query: 575 KGLSPQAQVVNRNNSASKPGLDKSSLPQSLPTERIEPSPAEHHQATCQPVGGGNNPINQS 754
+ + + + +P P PT EP+P++ + +P P ++
Sbjct: 1261 TPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP-----TPSDEP 1315
Query: 755 SPS 763
+PS
Sbjct: 1316 TPS 1318
Score = 46.2 bits (108), Expect = 1e-04
Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 1/183 (0%)
Frame = +2
Query: 218 PVDTQSKD-LEIEEKIAQQKKQLGDDSKKSDDFTPSFSRSQKRQTNTTQNSATFDSKPEK 394
P DT S + +E + D+ SD+ TPS + + T+T + T +P
Sbjct: 774 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 833
Query: 395 SENRTKAISSTTKSNVSTFQRNEQLVKPSDSVKPEPSEPVKPDPQPAPIPVNVWNERMKA 574
S+ T + T + + E+ + P+D+ EP+ +P P P P + +
Sbjct: 834 SDEPTPSDEPTPSDEPTPSETPEEPI-PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 892
Query: 575 KGLSPQAQVVNRNNSASKPGLDKSSLPQSLPTERIEPSPAEHHQATCQPVGGGNNPINQS 754
+ + + + +P P PT EP+P++ + P PI
Sbjct: 893 TPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP----EEPIPTD 948
Query: 755 SPS 763
+PS
Sbjct: 949 TPS 951
Score = 44.3 bits (103), Expect = 4e-04
Identities = 44/216 (20%), Positives = 78/216 (36%)
Frame = +2
Query: 116 TMQDNSKPMPIVERSDPKDLVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLGDDS 295
T D P E P D + S + P D + +E + D+
Sbjct: 985 TPSDEPTPSETPEEPIPTDTPSDEPTPS--DEPTPSDEPTPS---DEPTPSDEPTPSDEP 1039
Query: 296 KKSDDFTPSFSRSQKRQTNTTQNSATFDSKPEKSENRTKAISSTTKSNVSTFQRNEQLVK 475
SD+ TPS + + T+T + T +P S+ T + T + + E+ +
Sbjct: 1040 TPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI- 1098
Query: 476 PSDSVKPEPSEPVKPDPQPAPIPVNVWNERMKAKGLSPQAQVVNRNNSASKPGLDKSSLP 655
P+D+ EP+ +P P P P + + + + + + +P P
Sbjct: 1099 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 1158
Query: 656 QSLPTERIEPSPAEHHQATCQPVGGGNNPINQSSPS 763
PT EP+P++ + P PI +PS
Sbjct: 1159 SDEPTPSDEPTPSDEPTPSETP----EEPIPTDTPS 1190
Score = 39.7 bits (91), Expect = 0.009
Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 1/183 (0%)
Frame = +2
Query: 218 PVDTQSKD-LEIEEKIAQQKKQLGDDSKKSDDFTPSFSRSQKRQTNTTQNSATFDSKPEK 394
P DT S + +E + D+ SD+ TPS + + T+T + T +P
Sbjct: 903 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 962
Query: 395 SENRTKAISSTTKSNVSTFQRNEQLVKPSDSVKPEPSEPVKPDPQPAPIPVNVWNERMKA 574
S+ T + T PSD +P PS+ +P P P P E +
Sbjct: 963 SDEPTPSDEPT----------------PSD--EPTPSD--EPTPSDEPTPSETPEEPIPT 1002
Query: 575 KGLSPQAQVVNRNNSASKPGLDKSSLPQSLPTERIEPSPAEHHQATCQPVGGGNNPINQS 754
S + + + +P P PT EP+P++ + P PI
Sbjct: 1003 DTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP----EEPIPTD 1058
Query: 755 SPS 763
+PS
Sbjct: 1059 TPS 1061
Score = 39.3 bits (90), Expect = 0.012
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 2/162 (1%)
Frame = +2
Query: 218 PVDTQSKD-LEIEEKIAQQKKQLGDDSKKSDDFTPSFSRSQKRQTNTTQNSATFDSKPEK 394
P DT S + +E + D+ SD+ TPS + + T+T + T +P
Sbjct: 1228 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 1287
Query: 395 SENRTKAISSTTKSNVSTFQRNEQLVKPSDSVKPEPSEPVKPDPQP-APIPVNVWNERMK 571
S+ T + T +P+ S +P PS+ P P PIP + ++
Sbjct: 1288 SDEPTPSDEPTPSD------------EPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPT 1335
Query: 572 AKGLSPQAQVVNRNNSASKPGLDKSSLPQSLPTERIEPSPAE 697
S + + + +P P PT EP+P+E
Sbjct: 1336 P---SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSE 1374
Score = 37.4 bits (85), Expect = 0.045
Identities = 47/199 (23%), Positives = 71/199 (35%), Gaps = 5/199 (2%)
Frame = +2
Query: 116 TMQDNSKPMPIVERSDPKDLVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLGDDS 295
T D P E P D + S + P D + +E + D+
Sbjct: 1255 TPSDEPTPSETPEEPIPTDTPSDEPTPS--DEPTPSDEPTPS---DEPTPSDEPTPSDEP 1309
Query: 296 KKSDDFTPSFSRSQKRQTNTTQNSATFDSKPEKSENRTKAISSTTKSNVSTFQRNEQLVK 475
SD+ TPS + + T+T + T +P S+ T + T + +
Sbjct: 1310 TPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSD------E 1363
Query: 476 PSDSVKPEPSE-PVKPDP--QPAPIPVNVWNERMKAKGLSPQAQVVNRNNSASKPGLDKS 646
P+ S +P PSE P +P P P P P G S + P +
Sbjct: 1364 PTPSDEPTPSETPEEPTPTTTPTPTPSTTPTSGSGGSGGSGGGGGGGGGTVPTSPTPTPT 1423
Query: 647 SLPQS--LPTERIEPSPAE 697
S P S PTE EP+P++
Sbjct: 1424 SKPTSTPAPTEIEEPTPSD 1442
>sp|Q50315|Y687_MYCPN Protein MPN687 (K05_orf250)
Length = 250
Score = 46.2 bits (108), Expect = 1e-04
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Frame = +2
Query: 146 IVERSDPKDLVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQ------------LGD 289
+ + D + V+E KKV +PV DL + K Q + G
Sbjct: 13 LAQDEDDAETVQEVKKVEQQLKLEPVVQPQHDLTNQTKANQSSQDRKFFSKDMPQFDFGP 72
Query: 290 DSKKSDDFTPSFSR--SQKRQTNTTQNSATFDSKPEKSENR--TKAISSTTKSNVSTFQR 457
K D+F SF++ Q+ QT+T + S+P N+ T+ + T + +++ FQ+
Sbjct: 73 LLKFGDEFVKSFNQFPKQEPQTSTQPVNVQPQSEPTNFNNQVPTQPVHQTAEVHLNEFQQ 132
Query: 458 ------NEQLVKPSDSVKPEPSEP-VKPDPQPAPIPVNVWNERMKAKGLSPQAQVVNRNN 616
N+Q V S+ ++ E ++P V+P PQP P P E+ + K + + +
Sbjct: 133 PTTTNFNQQPVATSN-IQVEATQPIVEPVPQPEPQPA---VEQPQVKQTTRPSNKLQEEE 188
Query: 617 SASKPGLDKSSLPQSLPTERIE 682
+ P K+ +P +P ER E
Sbjct: 189 NLPPP---KAKVPGIIPLERQE 207
>sp|P35663|CYLC1_HUMAN Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)
Length = 651
Score = 44.7 bits (104), Expect = 3e-04
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Frame = +2
Query: 20 RNDDKALSDNSENWRRG-TNRDTKSGSFNRRNQTMQD---NSKPMPIVERSDPKDLVKET 187
++DD+++ N + W R + ++K+ S T +D N+K E D KD K++
Sbjct: 253 QSDDESI--NFDAWLRNYSQNNSKNYSLKYTKYTKKDTKKNAKKSSDAESEDSKDAKKDS 310
Query: 188 KKV-----------SIFGDAKPVDTQSKDLEIEEK-IAQQKKQLGDDSKKSD-----DFT 316
KKV + D + D +S D + E K + KK+L D KK D + T
Sbjct: 311 KKVKKNVKKDDKKKDVKKDTESTDAESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPEST 370
Query: 317 PSFSRSQKRQTNTTQNSATFDSKPEKSENRTKAISST-TKSNVSTFQRNEQLVKPSDSVK 493
+ S K N ++N +K ++ K ST ++S + + + + K K
Sbjct: 371 DTESGDAKDARNDSRNLKKASKNDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSK 430
Query: 494 PEPSEPVKPDPQ 529
+ + VK D +
Sbjct: 431 TDNKKSVKNDEE 442
Score = 35.4 bits (80), Expect = 0.17
Identities = 46/223 (20%), Positives = 83/223 (37%), Gaps = 34/223 (15%)
Frame = +2
Query: 2 DKPSLIRNDDKALSDNSE---NWRRGTNRDTKSGSFNRRNQTMQDNSKPMPIVERSDPKD 172
D ++ND+++ +SE + ++G + K ++++ +D K E +
Sbjct: 432 DNKKSVKNDEESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLE 491
Query: 173 LVKETK--------KVSIFGDAKPVDTQSKDLEIEEK----IAQQKKQLGDDSKKSDD-F 313
L K+ K K I DA+ DT+S D E +E K G D++ + +
Sbjct: 492 LKKDKKHSKEKKGSKKDIKKDARK-DTESTDAEFDESSKTGFKTSTKIKGSDTESEESLY 550
Query: 314 TPSFSRSQKRQTNTTQNSATFDSKPEKSENRTKAISSTTKSNVSTFQRNEQLVKPSDSVK 493
P + T+ NS + +S+ + S T N + + V PS
Sbjct: 551 KPGAKKKIDESDGTSANSKM---EGLESKRGFRMSSKKTTFNEKGEKASTGRVPPSREKP 607
Query: 494 PEPS------------------EPVKPDPQPAPIPVNVWNERM 568
P P+ P P P+ AP+P W ++
Sbjct: 608 PLPACEPSLPSPKVRRLCWCKMPPPPPKPRYAPLPEAPWIHKL 650
Score = 34.7 bits (78), Expect = 0.29
Identities = 49/254 (19%), Positives = 101/254 (39%), Gaps = 3/254 (1%)
Frame = +2
Query: 2 DKPSLIRNDDKALSDN---SENWRRGTNRDTKSGSFNRRNQTMQDNSKPMPIVERSDPKD 172
DK L ++D K + S + G +D ++ S N + + D+ K
Sbjct: 350 DKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKNDDKK------------ 397
Query: 173 LVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLGDDSKKSDDFTPSFSRSQKRQTN 352
K+ KK++ D++ + +SK+ + +EK + KK D+KKS
Sbjct: 398 --KDAKKITFSTDSES-ELESKESQKDEK--KDKKDSKTDNKKS--------------VK 438
Query: 353 TTQNSATFDSKPEKSENRTKAISSTTKSNVSTFQRNEQLVKPSDSVKPEPSEPVKPDPQP 532
+ S DS+P+ + K K + + + K ++S + E +K D +
Sbjct: 439 NDEESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLELKKDKKH 498
Query: 533 APIPVNVWNERMKAKGLSPQAQVVNRNNSASKPGLDKSSLPQSLPTERIEPSPAEHHQAT 712
+ ++ K + A+ ++ ++ D+SS + +I+ S E ++
Sbjct: 499 SK------EKKGSKKDIKKDAR---KDTESTDAEFDESSKTGFKTSTKIKGSDTESEESL 549
Query: 713 CQPVGGGNNPINQS 754
+P G I++S
Sbjct: 550 YKP--GAKKKIDES 561
>sp|Q09950|YSR2_CAEEL Hypothetical protein F59B10.2 in chromosome II
Length = 482
Score = 43.9 bits (102), Expect = 5e-04
Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 11/194 (5%)
Frame = +2
Query: 134 KPMP------IVERSDPKDLVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLGDDS 295
KP P +VE+ K VKE +K + P T+S + + + +S
Sbjct: 176 KPAPARTAPIVVEKKIEKPAVKE-QKARKKKEKTPTPTESSFESSSDSSSTSESSTSSES 234
Query: 296 KKSDDFTPSFSRSQKRQTNT-TQNSATFDSKPEKSENRTKAISSTTKSNVSTFQRNEQLV 472
S + S S+S+ + +++ T S SK S+ ++ SS++ S +S ++L
Sbjct: 235 SSSASESESESKSESQVSSSKTSTSKASSSKAYGSDFESEKSSSSSASTISKVTP-KKLD 293
Query: 473 KPSDSVKPEPS----EPVKPDPQPAPIPVNVWNERMKAKGLSPQAQVVNRNNSASKPGLD 640
KP + KP+ + ++ + +P PIP + ++ ++ + + V N + L
Sbjct: 294 KPQKTKKPDKKRAKPDDIRQNKKPEPIPYEDFIPKLSSRSSNSEKSTVRETNRTLEESL- 352
Query: 641 KSSLPQSLPTERIE 682
K +L + +E++E
Sbjct: 353 KKTLKINKSSEKME 366
>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MAP 1A) (Proliferation-related
protein p80) [Contains: MAP1 light chain LC2]
Length = 2805
Score = 42.7 bits (99), Expect = 0.001
Identities = 47/267 (17%), Positives = 104/267 (38%), Gaps = 32/267 (11%)
Frame = +2
Query: 5 KPSLIRNDDKALSDNSENW-RRGTNRDTKSGSFNRRNQTMQDNSKPMPIVER-SDPKDLV 178
K ++ DKAL + ++ T + K + +++ +++ K + ++ + KD
Sbjct: 1397 KNEAVKQQDKALEQKGRDLEQKDTALEQKDKALEPKDKDLEEKDKALEQKDKIPEEKDKA 1456
Query: 179 KETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLGDDSKKS-------------DDFTP 319
E K ++ K ++ + KDLE ++++ +QK+++ ++ K+ +D
Sbjct: 1457 LEQKDTALEQKDKALEPKDKDLEQKDRVLEQKEKIPEEKDKALDQKVRSVEHKAPEDTVA 1516
Query: 320 SFSRSQKRQTNTT--QNSATFDSKPEKSENRTKAI----------SSTTKSNVSTFQRNE 463
QT+ Q + K + SE + +A+ + N+ + N
Sbjct: 1517 EMKDRDLEQTDKAPEQKHQAQEQKDKVSEKKDQALEQKYWALGQKDEALEQNIQALEENH 1576
Query: 464 QLVKPSDSVKPEPSEPVKPDPQPAPIPVNVWNERM-----KAKGLSPQAQVVNRNNSASK 628
Q + V+ + + K + +P V E++ K K L + +V + +
Sbjct: 1577 QTQEQESLVQEDKTRKPKMLEEKSPEKVKAMEEKLEALLEKTKALGLEESLVQEGRAREQ 1636
Query: 629 PGLDKSSLPQSLPTERIEPSPAEHHQA 709
+K Q + E E SP A
Sbjct: 1637 E--EKYWRGQDVVQEWQETSPTREEPA 1661
>sp|Q5R5X0|PININ_PONPY Pinin
Length = 719
Score = 42.4 bits (98), Expect = 0.001
Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 10/228 (4%)
Frame = +2
Query: 107 RNQTMQDNSKPMPIVERSDPKDLVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQL- 283
R Q+M++ K +V + K +E K + + Q D+EIEE +++K++
Sbjct: 286 RRQSMKE--KEHQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEIA 343
Query: 284 -----GDDSKKSDDFTPSFSRSQKRQTNTTQNSATFDSKPEKSENRTKAISSTTKSNVST 448
+ ++ ++ + +T ++ DS+PE+ + + + NV
Sbjct: 344 IVHSDAEKEQEEEEQKQEIEVKMEEETEVRESEKQQDSQPEEVMDVLEMV-----ENVKH 398
Query: 449 FQRNEQLVKPS--DSVKPEPSEPVKPDPQPAPIPVNVWNERMKAKGLSPQAQVVNR--NN 616
++++++ + +SV+P +E K + NE K LSP + V+
Sbjct: 399 VIADQEVMETNRVESVEPSENEASKELEPEMEFEIEPDNE---CKSLSPGKENVSALDME 455
Query: 617 SASKPGLDKSSLPQSLPTERIEPSPAEHHQATCQPVGGGNNPINQSSP 760
S+ +K S PQ P + +P P Q Q + P+ QS P
Sbjct: 456 KESEEKEEKESEPQPEPVAQPQPQPQHQPQLQLQ---SQSQPVLQSQP 500
Score = 35.8 bits (81), Expect = 0.13
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 4/176 (2%)
Frame = +2
Query: 176 VKETKKVSIFGDAKPVDTQSKD-LEIEEKIAQQKKQLGDDSKKSDDFTPSFSRSQKRQTN 352
VK ++ + K D+Q ++ +++ E + K + D + S S+ +
Sbjct: 364 VKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKHVIADQEVMETNRVESVEPSENEASK 423
Query: 353 TTQNSATFDSKPEKSENRTKAISSTTKSNVSTFQ-RNEQLVKPSDSVKPEPSEPVKPDPQ 529
+ F+ +P+ N K++S K NVS E K +P+P +P PQ
Sbjct: 424 ELEPEMEFEIEPD---NECKSLSPG-KENVSALDMEKESEEKEEKESEPQPEPVAQPQPQ 479
Query: 530 PAPIPVNVWNERMKAKGLSPQAQVVNRNNSASKPGLDKS--SLPQSLPTERIEPSP 691
P PQ Q+ S S+P L S P++L ++P+P
Sbjct: 480 PQH---------------QPQLQL----QSQSQPVLQSQPPSQPENLSLAVLQPTP 516
>sp|P79149|PININ_CANFA Pinin
Length = 773
Score = 42.0 bits (97), Expect = 0.002
Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 18/223 (8%)
Frame = +2
Query: 107 RNQTMQDNSKPMPIVERSDPKDLVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLG 286
R Q+M++ K +V + K +E K + + Q D+EIEE +++K++G
Sbjct: 286 RRQSMKE--KEHQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEIG 343
Query: 287 ---DDSKKSDDFTPSFSRSQ---KRQTNTTQNSATFDSKPEKSENRTKAISSTTKSNVST 448
D++K + + + +T ++ DS+PE+ + + + NV
Sbjct: 344 IVHSDAEKEQEEEEQKQEMEVKIEEETEVRESEKQQDSQPEEVMDVLEMLLHVAVKNVIA 403
Query: 449 FQ-----RNEQLVKPSDS-----VKPEPSEPVKPDPQPAPIPVNVWNERMKAKGLSPQAQ 598
Q + V+PS++ ++PE V+PD + K LSP +
Sbjct: 404 EQEVMETNQVESVEPSENETSKELEPEMEFEVEPDKE--------------CKSLSPVRE 449
Query: 599 VVNRNNSASKP--GLDKSSLPQSLPTERIEPSPAEHHQATCQP 721
+ ++P ++ S PQ P ++P P + QP
Sbjct: 450 NASALEMENEPEEKEERESEPQPEPVRHLQPLPQPEPEPELQP 492
Score = 30.4 bits (67), Expect = 5.4
Identities = 36/213 (16%), Positives = 83/213 (38%), Gaps = 7/213 (3%)
Frame = +2
Query: 107 RNQTMQDNSKPMPIVERSDPKDLVKETKKVSIFGDAKPVDTQSKDLEIEEKIAQQKKQLG 286
R Q +S+P ++ D +++ ++ + + ++T E + + +
Sbjct: 373 RESEKQQDSQPEEVM---DVLEMLLHVAVKNVIAEQEVMETNQV-----ESVEPSENETS 424
Query: 287 DDSKKSDDFTPSFSRSQKRQTNTTQNSATFD--SKPEKSENRTKAISSTTKSNVSTFQRN 460
+ + +F + K + +N++ + ++PE+ E R ++ +
Sbjct: 425 KELEPEMEFEVEPDKECKSLSPVRENASALEMENEPEEKEERESEPQPEPVRHLQPLPQP 484
Query: 461 EQLVKPSDSVKPEPSEPVKPDPQPAP-IPVNVWNERMKAKGLSPQAQVVNRNNSASKPGL 637
E P ++PEP ++P+PQ P + + + + PQ Q+ +P +
Sbjct: 485 E----PEPELQPEPQPQLQPEPQLQPQLQLQLQPQPQSQSQPQPQLQLPLPLPLQPQPQV 540
Query: 638 DKSSLPQSL----PTERIEPSPAEHHQATCQPV 724
S PQ++ P + E P QA Q +
Sbjct: 541 QAQSQPQAVLQPQPVSQPETLPLAVLQAPVQVI 573
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,348,025
Number of Sequences: 369166
Number of extensions: 1764425
Number of successful extensions: 11229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10082
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)