Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A12
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22494|VATH2_CAEEL Probable vacuolar ATP synthase subuni... 232 6e-61
sp|Q9V3J1|VATH_DROME Vacuolar ATP synthase subunit H (V-ATP... 227 2e-59
sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATP... 216 3e-56
sp|Q8BVE3|VATH_MOUSE Vacuolar ATP synthase subunit H (V-ATP... 213 3e-55
sp|Q9UI12|VATH_HUMAN Vacuolar ATP synthase subunit H (V-ATP... 213 3e-55
sp|Q9TVC1|VATH_PIG Vacuolar ATP synthase subunit H (V-ATPas... 212 6e-55
sp|O46563|VATH_BOVIN Vacuolar ATP synthase subunit H (V-ATP... 210 2e-54
sp|Q20666|VATH1_CAEEL Probable vacuolar ATP synthase subuni... 156 5e-38
sp|Q9LX65|VATH_ARATH Probable vacuolar ATP synthase subunit... 105 8e-23
sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATP... 103 5e-22
>sp|Q22494|VATH2_CAEEL Probable vacuolar ATP synthase subunit H 2 (V-ATPase H subunit 2)
(Vacuolar proton pump H subunit 2) (Vacuolar proton pump
subunit SFD 2)
Length = 470
Score = 232 bits (592), Expect = 6e-61
Identities = 118/217 (54%), Positives = 159/217 (73%), Gaps = 2/217 (0%)
Frame = +1
Query: 22 NEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDA 201
N+YM T AR LQMMLR +YR FV+ GV+T+V AL GK N Q+QYQLIF +WCL+F+A
Sbjct: 182 NDYMNTTARCLQMMLRHDEYRHEFVDSDGVQTLVTALNGKTNFQLQYQLIFAVWCLTFNA 241
Query: 202 DIVIQIIKTPSL--ISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQ 375
DI K PSL I + DI+ ++ +EK+IR+ LA F +L K+ + RE AL MVQ
Sbjct: 242 DIAR---KAPSLGLIQALGDILSESTKEKVIRIILASFVNILSKVDEREVKREAALQMVQ 298
Query: 376 CKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVH 555
CK +K LEL+ K Y DP+L DD+ +L E+L+ SV D+SS +EY E++SGRL+WSPVH
Sbjct: 299 CKTLKTLELMDAKKYD-DPDLEDDVKFLTEELTLSVHDLSSYDEYYSEVRSGRLQWSPVH 357
Query: 556 KAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
K+EKFWRENA KF DK FE++K+L++LL++S DP++L
Sbjct: 358 KSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLIL 394
>sp|Q9V3J1|VATH_DROME Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD)
Length = 468
Score = 227 bits (579), Expect = 2e-59
Identities = 110/222 (49%), Positives = 164/222 (73%)
Frame = +1
Query: 1 DQFRFPDNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCL 180
DQ +NEY+Q+VAR LQMMLR+ +YR FV G+ T++ L ++N Q+QYQLIFCL
Sbjct: 167 DQLASNNNEYIQSVARCLQMMLRVDEYRFAFVGVDGISTLIRILSTRVNFQVQYQLIFCL 226
Query: 181 WCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVA 360
W L+F+ + ++ K S+I +++DI+ +EK+ R+ LA+FR L+EK + + ++
Sbjct: 227 WVLTFNPLLAAKMNKF-SVIPILADILSDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHC 285
Query: 361 LAMVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLE 540
+AMVQCK++KQL +L+Q+ + D ++T D+ YL EKL +SV+D+SS +EY E++SGRLE
Sbjct: 286 IAMVQCKVLKQLSILEQRRFD-DEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSGRLE 344
Query: 541 WSPVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
WSPVHK+ KFWRENA + +KN+ELL++LV LL+TSKD I+L
Sbjct: 345 WSPVHKSAKFWRENAQRLNEKNYELLRILVHLLETSKDAIIL 386
>sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD)
Length = 475
Score = 216 bits (551), Expect = 3e-56
Identities = 104/222 (46%), Positives = 162/222 (72%)
Frame = +1
Query: 1 DQFRFPDNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCL 180
DQ + +N+Y+Q+VAR LQMMLR+ +YR F+ G+ T+++ L ++N Q+QYQL+FCL
Sbjct: 175 DQLKMNNNDYIQSVARCLQMMLRVDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCL 234
Query: 181 WCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVA 360
W L+F+ + ++ K + I +++DI+ + +EK+ R+ LA+FR L+EK +Q +E
Sbjct: 235 WVLTFNPLLAEKMNKF-NAIPILADILSDSVKEKVTRIVLAVFRNLIEKPQDQQVAKEHC 293
Query: 361 LAMVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLE 540
+AMVQCK++KQL +L+QK S D ++ +D+ +L E+L +SV+D+SS ++Y E+KSGRLE
Sbjct: 294 IAMVQCKVLKQLSILEQKR-SDDEDIMNDVEFLNERLQASVQDLSSFDQYATEVKSGRLE 352
Query: 541 WSPVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
WSPVHK+ KFWRENA + ++ ELL+ LV LL+ S DP+VL
Sbjct: 353 WSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSHDPVVL 394
>sp|Q8BVE3|VATH_MOUSE Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit)
Length = 483
Score = 213 bits (543), Expect = 3e-55
Identities = 106/215 (49%), Positives = 157/215 (73%)
Frame = +1
Query: 22 NEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDA 201
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W L+F
Sbjct: 195 SQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSP 254
Query: 202 DIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCK 381
+ + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + + +E ALAM+QCK
Sbjct: 255 QMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCK 313
Query: 382 IMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKA 561
++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWSPVHK+
Sbjct: 314 VLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKS 372
Query: 562 EKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
EKFWRENA + +KN+ELLK+L +LL+ S DP VL
Sbjct: 373 EKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVL 407
>sp|Q9UI12|VATH_HUMAN Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 50/57 kDa subunits)
(Vacuolar proton pump subunit SFD) (VMA13) (Nef binding
protein 1) (NBP1)
Length = 483
Score = 213 bits (543), Expect = 3e-55
Identities = 106/215 (49%), Positives = 157/215 (73%)
Frame = +1
Query: 22 NEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDA 201
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W L+F
Sbjct: 195 SQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSP 254
Query: 202 DIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCK 381
+ + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + + +E ALAM+QCK
Sbjct: 255 QMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCK 313
Query: 382 IMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKA 561
++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWSPVHK+
Sbjct: 314 VLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKS 372
Query: 562 EKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
EKFWRENA + +KN+ELLK+L +LL+ S DP VL
Sbjct: 373 EKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVL 407
>sp|Q9TVC1|VATH_PIG Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 50/57 kDa subunits)
(Vacuolar proton pump subunit SFD)
Length = 483
Score = 212 bits (540), Expect = 6e-55
Identities = 105/215 (48%), Positives = 157/215 (73%)
Frame = +1
Query: 22 NEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDA 201
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W L+F
Sbjct: 195 SQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSP 254
Query: 202 DIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCK 381
+ + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + + +E ALA++QCK
Sbjct: 255 QMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALALIQCK 313
Query: 382 IMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKA 561
++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWSPVHK+
Sbjct: 314 VLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKS 372
Query: 562 EKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
EKFWRENA + +KN+ELLK+L +LL+ S DP VL
Sbjct: 373 EKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVL 407
>sp|O46563|VATH_BOVIN Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 50/57 kDa subunits)
(Vacuolar proton pump subunit SFD)
Length = 483
Score = 210 bits (535), Expect = 2e-54
Identities = 105/215 (48%), Positives = 155/215 (72%)
Frame = +1
Query: 22 NEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDA 201
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W L+F
Sbjct: 195 SQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSVWLLAFSP 254
Query: 202 DIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCK 381
+ + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + +E ALAM+QCK
Sbjct: 255 QMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSVERETRQEYALAMIQCK 313
Query: 382 IMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKA 561
++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWSPVHK+
Sbjct: 314 VLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKS 372
Query: 562 EKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
EKFWREN + +KN+ELLK+L +LL+ S DP VL
Sbjct: 373 EKFWRENPARLNEKNYELLKILTKLLEVSDDPQVL 407
>sp|Q20666|VATH1_CAEEL Probable vacuolar ATP synthase subunit H 1 (V-ATPase H subunit 1)
(Vacuolar proton pump H subunit 1) (Vacuolar proton pump
subunit SFD 1)
Length = 451
Score = 156 bits (394), Expect = 5e-38
Identities = 82/221 (37%), Positives = 134/221 (60%), Gaps = 2/221 (0%)
Frame = +1
Query: 10 RFPDNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGG--KLNTQIQYQLIFCLW 183
R +N+Y+ T R +Q + R YR FV +G +++ +AL K QIQYQ+IFC+W
Sbjct: 169 RGTNNDYIVTAVRCMQTLFRFDPYRVSFVNINGYDSLTHALYSTRKCGFQIQYQIIFCMW 228
Query: 184 CLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVAL 363
L+F+ ++ + +LI +S I+ ++EK+IR+ ++ R L+ + ++ AL
Sbjct: 229 LLTFNGHAA-EVALSGNLIQTISGILGNCQKEKVIRIVVSTLRNLITSNQDVYMKKQAAL 287
Query: 364 AMVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEW 543
M+Q +I +L+ L+ + ++ D +L +D+ YLQ +L V+ ++S +EY EL+ G L W
Sbjct: 288 QMIQNRIPTKLDHLENRKFT-DVDLVEDMVYLQTELKKVVQVLTSFDEYENELRQGSLHW 346
Query: 544 SPVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVL 666
SP HK E FW ENA + D ELLK+LV +L+ S DP+VL
Sbjct: 347 SPAHKCEVFWNENAHRLNDNRQELLKLLVAMLEKSNDPLVL 387
>sp|Q9LX65|VATH_ARATH Probable vacuolar ATP synthase subunit H (V-ATPase H subunit)
(Vacuolar proton pump H subunit) (Vacuolar proton pump
subunit SFD)
Length = 441
Score = 105 bits (263), Expect = 8e-23
Identities = 60/205 (29%), Positives = 115/205 (56%), Gaps = 3/205 (1%)
Frame = +1
Query: 52 LQMMLRIRQYRKVFVECSGVETIVNALGG---KLNTQIQYQLIFCLWCLSFDADIVIQII 222
L +L+ R FV+ GV+ +V + + + Q+ Y+ C+W LS+ + I+ +
Sbjct: 179 LSSLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSY-YEPAIEYL 237
Query: 223 KTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLEL 402
T + ++++++ + +EK++RV + FR LL K + Q+ ++ L + +
Sbjct: 238 ATSRTMQRLTEVVKHSTKEKVVRVVILTFRNLLPKGTFGAQMVDLGLPHI-------IHS 290
Query: 403 LQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKAEKFWREN 582
L+ + +S D +L D L L+E L ++ +SS ++Y E+ G L+W+P+HK FWREN
Sbjct: 291 LKTQAWS-DEDLLDALNQLEEGLKDKIKKLSSFDKYKQEVLLGHLDWNPMHKETNFWREN 349
Query: 583 ADKFLDKNFELLKMLVELLKTSKDP 657
F + +F++L++L+ +L TS DP
Sbjct: 350 VTCFEENDFQILRVLLTILDTSSDP 374
>sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 54 kDa subunit)
Length = 450
Score = 103 bits (256), Expect = 5e-22
Identities = 57/181 (31%), Positives = 105/181 (58%)
Frame = +1
Query: 112 ETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIR 291
E + N++G +TQ+QY +FC W L+F++ I I K LI ++ IIR + K+ R
Sbjct: 211 ELLRNSIG---DTQLQYYSLFCFWQLTFESHIAQDINKRFDLIKLLVQIIRSDTKTKVYR 267
Query: 292 VSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKL 471
+ LA+ L++K ++ M+ + K ++LLQ++ ++ D ++T+ L ++ L
Sbjct: 268 LVLAILVNLIDKAP-----KDTISTMLLEHVDKAVQLLQKRKWA-DEDITNYLDFITSTL 321
Query: 472 SSSVRDVSSMEEYTIELKSGRLEWSPVHKAEKFWRENADKFLDKNFELLKMLVELLKTSK 651
S + +S+ + Y EL +G L WSP H++E FW +NA + + N+ LLK L +++ ++
Sbjct: 322 DESSKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNE 381
Query: 652 D 654
D
Sbjct: 382 D 382
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,321,587
Number of Sequences: 369166
Number of extensions: 1422936
Number of successful extensions: 4155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4134
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)