Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A08
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q11077|YWV3_CAEEL Hypothetical protein B0403.3 in chromo... 31 1.00
sp|Q24025|SOG_DROME Dorsal-ventral patterning protein Sog (... 31 1.00
sp|Q9YGK5|COLI2_CYPCA Corticotropin-lipotropin II precursor... 30 1.7
sp|Q9N0L8|WAP_MACEU Whey acidic protein precursor (tWAP) 30 2.2
sp|P75302|Y483_MYCPN Hypothetical protein MG335.2 homolog (... 28 5.0
sp|Q9K063|PUR7_NEIMB Phosphoribosylaminoimidazole-succinoca... 28 6.5
sp|Q9JV73|PUR7_NEIMA Phosphoribosylaminoimidazole-succinoca... 28 6.5
sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphod... 28 6.5
sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor prec... 28 6.5
>sp|Q11077|YWV3_CAEEL Hypothetical protein B0403.3 in chromosome X
Length = 272
Score = 30.8 bits (68), Expect = 1.00
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 177 HICPNHFYNFQRNLKPQNCSDRFALNRVCHN 85
HIC HF NF RN+ + +D++ + R C N
Sbjct: 110 HICVGHFDNFDRNINCLSLTDKY-VQRECSN 139
>sp|Q24025|SOG_DROME Dorsal-ventral patterning protein Sog (Short gastrulation protein)
Length = 1038
Score = 30.8 bits (68), Expect = 1.00
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +3
Query: 18 IVKIQSEETVVECRAKCWDTAVNCD-KLCSTQTDQSSSVVLS------CVENCKSDLDRC 176
I+ E+ ++CR C D+ VNCD K CS T Q + V S + +D C
Sbjct: 957 ILMSHGEQKCIKCR--CKDSKVNCDRKRCSRSTCQQQTRVTSKRRLFEKPDAAAPAIDEC 1014
Query: 177 VQTSC 191
T C
Sbjct: 1015 CSTQC 1019
>sp|Q9YGK5|COLI2_CYPCA Corticotropin-lipotropin II precursor (Pro-opiomelanocortin II)
(POMC II) [Contains: Corticotropin (Adrenocorticotropic
hormone) (ACTH); Melanotropin alpha (Alpha-MSH);
Corticotropin-like intermediary peptide (CLIP);
Lipotropin beta (Beta-LPH); Lipotropin gamma
(Gamma-LPH); Melanotropin beta (Beta-MSH);
Beta-endorphin; Met-enkephalin]
Length = 222
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 51 ECRAKCWDTAVNCDKLCSTQTDQSSSVVLSCVENCKSDL 167
E RA+CW+ A C L TD++ +L+C++ C+SDL
Sbjct: 25 EVRAQCWEDA-RCRDLT---TDEN---ILNCIQLCRSDL 56
>sp|Q9N0L8|WAP_MACEU Whey acidic protein precursor (tWAP)
Length = 191
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Frame = +3
Query: 54 CRAKCWDTAVNCDKLCSTQTDQSSSVVLS-----CVENCKSDLD-----RCVQTSCG 194
C C +T D LC T SSS C + CK+DL +C +SCG
Sbjct: 63 CSWLCMNTTQEKDGLCPVATSHSSSSEEQQRKQLCDKTCKTDLGCEGKAKCCASSCG 119
>sp|P75302|Y483_MYCPN Hypothetical protein MG335.2 homolog (P01_orf341)
Length = 341
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 49 WNVELNVGILR*IVTNSVQRKPIRAVLWF*VALKIVKVIWTD 174
WN+ +N + + V R +WF + K KV+W D
Sbjct: 171 WNIVINTAFFKALDLQFVNRFIEDIAVWFPIMFKAQKVLWID 212
>sp|Q9K063|PUR7_NEIMB Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 287
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 225 GKIVKKQDSYFHKKFVHICPNHF 157
G+I+ + +++ KK HI PNHF
Sbjct: 48 GEILTQISNFWFKKLAHIMPNHF 70
>sp|Q9JV73|PUR7_NEIMA Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 287
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 225 GKIVKKQDSYFHKKFVHICPNHF 157
G+I+ + +++ KK HI PNHF
Sbjct: 48 GEILTQISNFWFKKLAHIMPNHF 70
>sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP 3)
(Phosphodiesterase I/nucleotide pyrophosphatase 3)
(Phosphodiesterase I beta) (PD-Ibeta) (RB13-6 antigen)
(B10) [Includes: Alkaline phosphodiesterase I ;
Nucleotide pyrophosphatase (NPPase)]
Length = 875
Score = 28.1 bits (61), Expect = 6.5
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +3
Query: 6 LVLGIVKIQSEETVVECRAKCWDTA------VNCDKLCSTQTDQSSSVVLSCVENCKSDL 167
L LG+ + EE + CR KC+D++ CD C+ + D +CV++ + +
Sbjct: 39 LGLGLGLRKPEEHIGSCRKKCFDSSHRGLEGCRCDSGCTDRGDCCWDFEDTCVKS--TQI 96
Query: 168 DRCVQTSCG 194
C CG
Sbjct: 97 WTCNSFRCG 105
>sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor precursor (CRNF)
Length = 121
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/59 (25%), Positives = 20/59 (33%)
Frame = +3
Query: 30 QSEETVVECRAKCWDTAVNCDKLCSTQTDQSSSVVLSCVENCKSDLDRCVQTSCGSMSP 206
Q V C CWD + C C DQ +S V N C + + + P
Sbjct: 54 QFTNETVACMQPCWDLGIPCRTQCYKVYDQCTSDCPYTVPNPYECFTTCFKEAFAEVKP 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,301,294
Number of Sequences: 369166
Number of extensions: 486996
Number of successful extensions: 1235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)