Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A05
(848 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sul... 54 4e-07
sp|P98163|YL_DROME Putative vitellogenin receptor precursor... 51 5e-06
sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan precur... 51 5e-06
sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sul... 49 1e-05
sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-rela... 49 2e-05
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-rela... 48 3e-05
sp|Q98930|SORL_CHICK Sortilin-related receptor (Sorting pro... 48 4e-05
sp|Q92673|SORL_HUMAN Sortilin-related receptor precursor (S... 47 5e-05
sp|Q95209|SORL_RABIT Sortilin-related receptor precursor (S... 47 9e-05
sp|P35952|LDLR_RAT Low-density lipoprotein receptor precurs... 46 1e-04
>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein
precursor (HSPG) (Perlecan) (PLC)
Length = 3707
Score = 54.3 bits (129), Expect = 4e-07
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
Frame = +1
Query: 28 IMILQNIQQMNEGKYECKVKGETKEAYI---IVMAKSRTIEVNPNEETRRVGDGRPVEFH 198
++ +QN+ Q +G Y C+ G +A +++ ++ +N V G VEF
Sbjct: 2771 VLRIQNLDQNCQGTYVCQAHGPWGQAQATAQLIVQALPSVLINVRTSVHSVVVGHSVEFE 2830
Query: 199 CRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSDAGTYI 378
C G V W SK G + P + I + EL+DAG Y
Sbjct: 2831 CLALG--DPKPQVTW---SKVGGHLRP----------GIVQSGTIIRIAHVELADAGQYR 2875
Query: 379 CTEPDTRDTARS-ILNVISDLRIVVTPPIIKLRAGQTATFQC 501
C + T +S +L ++ L + TPP I++ AG A F C
Sbjct: 2876 CAATNAAGTTQSHVLLLVQALPQISTPPEIRVPAGSAAVFPC 2917
Score = 37.7 bits (86), Expect = 0.041
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C C +G CI CDG+ DC DGSDE
Sbjct: 285 CGPQEASCHSGHCIPRDYLCDGQEDCRDGSDE 316
Score = 37.4 bits (85), Expect = 0.053
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Frame = +1
Query: 25 SIMILQNIQQMNEGKYECKVKGE--TKEAYIIVMAKSRTIEVNPNEETRRVGDGRPVEFH 198
+I+ + +++ + G+Y C T +++++++ ++ P E RV G F
Sbjct: 2859 TIIRIAHVELADAGQYRCAATNAAGTTQSHVLLLVQALPQISTPPEI--RVPAGSAAVFP 2916
Query: 199 CRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSDAGTYI 378
C GY T + W SK G + P +SR E + ++L DAGTY+
Sbjct: 2917 CMASGYPTPA--ITW---SKVDGDLPP-DSRL---------ENNMLMLPSVRPEDAGTYV 2961
Query: 379 CT 384
CT
Sbjct: 2962 CT 2963
Score = 37.0 bits (84), Expect = 0.069
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Frame = +1
Query: 43 NIQQMNEGKYECKVKG-----ETKEAYIIVMAKSRTIEVNPNEE-TRRVGDGRPVEFHCR 204
++Q + G Y C + ++ ++ A S+ I V E+ ++ V G V F C
Sbjct: 1734 SVQPSDAGVYICTCRNLIHTSNSRAELLVAEAPSKPIMVTVEEQRSQSVRPGADVTFICT 1793
Query: 205 IGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSDAGTYICT 384
++ +VWT + L SR D + ++ + SDAGTY+CT
Sbjct: 1794 AKS-KSPAYTLVWTRLHNGK-----LPSR-------AMDFNGILTIRNVQPSDAGTYVCT 1840
Query: 385 EPD--TRDTARSILNV-ISDLRIV----VTPPIIKLRAGQTATFQC 501
+ D + L+V +S + PP + ++ GQ A F+C
Sbjct: 1841 GSNMFAMDQGTATLHVQVSGTSTAPVASIHPPQLTVQPGQQAEFRC 1886
Score = 36.6 bits (83), Expect = 0.090
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Frame = +1
Query: 37 LQNIQQMNEGKYECKVKGE--TKEAYIIVMAKSRTIEVNPNEETRRVGDGRPVEFHCRIG 210
L + + G+Y C+V G T EA ++V TIE + G +PV
Sbjct: 2202 LNRVSPADSGEYSCQVTGSSGTLEASVLV-----TIEASEPSPIPAPGLAQPVYIESS-S 2255
Query: 211 GYRTKNR--DVVWTFMSKETGQITPLESRWSR--SDDPTADET--SFIILQQAELSDAGT 372
+ T+ + D+ + Q+T W + S P +T S + L Q +D+G
Sbjct: 2256 SHLTEGQTVDLKCVVPGQAHAQVT-----WHKRGSSLPARHQTHGSLLRLYQLSPADSGE 2310
Query: 373 YICT---------EPDTRDTARSILNVISDLR---IVVTPPIIKLRAGQTATFQCYVLNG 516
Y+C E + T S N LR I + PP ++ GQ A+F+C + G
Sbjct: 2311 YVCQVAGSSHPEHEASFKLTVPSSQNSSFRLRSPVISIEPPSSTVQQGQDASFKCLIHEG 2370
Score = 35.4 bits (80), Expect = 0.20
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Frame = +1
Query: 289 RWSRSDDPTADE-------TSFIILQQAEL--SDAGTYICTEPDTRDTARSILNVISDLR 441
RW+R P E S +L+ A + SDAGTY+C + TA+ + +I D
Sbjct: 2467 RWTRLGIPVKLEPRMFGLMNSHAMLKIASVKPSDAGTYVCQAQNALGTAQKQVELIVDTG 2526
Query: 442 IVV--TPPI------IKLRAGQTATFQC 501
V TP + + L AG TAT C
Sbjct: 2527 TVAPGTPQVQVEESELTLEAGHTATLHC 2554
Score = 33.5 bits (75), Expect = 0.76
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 667 CRKGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
CR G S ++ P C C NG C CDG DC D +DE
Sbjct: 310 CRDG--SDELGCASPPPCEPNEFACENGHCALKLWRCDGDFDCEDRTDE 356
Score = 30.8 bits (68), Expect = 5.0
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Frame = +1
Query: 13 RLYVSIMILQNIQQMNEGKYECKVKGETKEAYIIVMAKSR-----TIEVNPNEETRRVGD 177
+++ I+ L I+ ++G+Y C+ + M + ++V+P E +V +
Sbjct: 1911 QIHNGILRLPAIEPSDQGQYLCRALSSAGQHVARAMLQVHGGSGPRVQVSP--ERTQVHE 1968
Query: 178 GRPVEFHCRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAEL 357
GR V +CR G + + W KE G + P + S + L +
Sbjct: 1969 GRTVRLYCRAAG--VPSASITW---RKEGGSL-PFRHQ---------AHGSRLRLHHMSV 2013
Query: 358 SDAGTYICTEPDTRDTARSILNV 426
+D+G Y+C + D + + +
Sbjct: 2014 ADSGEYVCRANNNIDAQETSIMI 2036
>sp|P98163|YL_DROME Putative vitellogenin receptor precursor (Yolkless protein) (YL)
Length = 1984
Score = 50.8 bits (120), Expect = 5e-06
Identities = 26/56 (46%), Positives = 30/56 (53%)
Frame = +1
Query: 676 GRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLCDP 843
G ++A D C AG CR+G CI AK CDG+ DC D SDE RLC P
Sbjct: 76 GGTAAGTPGSADTRCDAGQFQCRDGGCILQAKMCDGRGDCKDSSDELDCDYRLCRP 131
Score = 43.5 bits (101), Expect = 7e-04
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 637 TTNDNGTRFTCRKGRSSADVIVLVDPICTAGSRLCRNG-ECINSAKFCDGKRDCADGSDE 813
T NGT C +G AD +C+ CR+G ECI CDG++DC DGSDE
Sbjct: 1261 TVRCNGTT-ECPRGEDEADC----GDVCSIYEFKCRSGRECIRREFRCDGQKDCGDGSDE 1315
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 676 GRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDE-DQEFCRLCDP 843
G +S +++ C G C +G CI + CDG+ DC+DGSDE D+ R C P
Sbjct: 1144 GDNSDELLCEATSRCEPGMFQCGSGSCIAGSWECDGRIDCSDGSDEHDKCVHRSCPP 1200
Score = 40.8 bits (94), Expect = 0.005
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKF-CDGKRDCADGSDEDQEFCRLCDP 843
C LC NG C+ ++ CDG DC DGSDE + LC+P
Sbjct: 227 CPGEGHLCANGRCLRRKQWVCDGVDDCGDGSDE-RGCLNLCEP 268
Score = 40.8 bits (94), Expect = 0.005
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 667 CRKGRSSADVIVLVDPICTAGSRLCRNGE-CINSAKFCDGKRDCADGSDE 813
C G + L +P G LCRN E C+ ++ CDG DC+DGSDE
Sbjct: 253 CGDGSDERGCLNLCEP--QKGKFLCRNRETCLTLSEVCDGHSDCSDGSDE 300
Score = 40.0 bits (92), Expect = 0.008
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C C NG+C++S+ CDG DC D SDE
Sbjct: 1118 CHVHQHGCDNGKCVDSSLVCDGTNDCGDNSDE 1149
Score = 38.9 bits (89), Expect = 0.018
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDE---DQEFCR----LCDP 843
C +GEC+ C+G+RDC D SDE D+E R LC P
Sbjct: 1035 CHSGECLTMNHRCNGRRDCVDNSDEMNCDEEHRRKPKVLCSP 1076
Score = 36.2 bits (82), Expect = 0.12
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 658 RFTCRKGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
R C G D V C + C G+C++ + CDG DC D SDE
Sbjct: 1180 RIDCSDGSDEHDKCV--HRSCPPDMQRCLLGQCLDRSLVCDGHNDCGDKSDE 1229
Score = 34.7 bits (78), Expect = 0.34
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 715 ICTAGSRLCRNGE-CINSAKFCDGKRDCADGSDE 813
+C+ C +GE C++ + CD ++DC D SDE
Sbjct: 1073 LCSPNQFACHSGEQCVDKERRCDNRKDCHDHSDE 1106
Score = 33.9 bits (76), Expect = 0.58
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFCRLC 837
C++GEC++ ++ C+ DC +G DE + C
Sbjct: 1347 CQDGECVDLSRVCNNFPDCTNGHDEGPKCATAC 1379
>sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan precursor (Perlecan homolog)
(Uncoordinated protein 52)
Length = 3375
Score = 50.8 bits (120), Expect = 5e-06
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 12/170 (7%)
Frame = +1
Query: 370 TYICTEPDTRDTARSILNVISDLRIVVTPPIIKLRAGQTATFQCYVLNGGRSADHPDFFM 549
TY + D DT SD++I V P ++R G+ +F+C S +
Sbjct: 31 TYQDIDSDDDDT--------SDVQITVFPSEKEVRDGRDVSFECRARTSDNSVYPTVRWA 82
Query: 550 ANGGRASDSQRTTVEKLEAGKVQLT----------YRAVTTNDNGTRFTCRKGRSSADVI 699
GG S + +L VQL+ Y T T G
Sbjct: 83 RVGGPLPSSAHDSGGRLTINPVQLSDAGTYICVSDYNGNTVEARATLSVVSYGPQEVSNG 142
Query: 700 VLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQ--EFCRLCDP 843
+ C A + C N EC+ + CDG+ DC D SDE R C+P
Sbjct: 143 LRQAGQCMADEKACGNNECVKNDYVCDGEPDCRDRSDEANCPAISRTCEP 192
Score = 50.4 bits (119), Expect = 6e-06
Identities = 71/252 (28%), Positives = 95/252 (37%), Gaps = 26/252 (10%)
Frame = +1
Query: 136 IEVNPNEETRRVGDGRPVEFHCRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPT 315
I V P+E + V DGR V F CR RT + V T RW+R P
Sbjct: 47 ITVFPSE--KEVRDGRDVSFECRA---RTSDNSVYPTV-------------RWARVGGPL 88
Query: 316 A----DETSFIILQQAELSDAGTYICTEPDTRDT--ARSILNVISDLRIVVTPPIIKLRA 477
D + + +LSDAGTYIC +T AR+ L+V+S V+ + +A
Sbjct: 89 PSSAHDSGGRLTINPVQLSDAGTYICVSDYNGNTVEARATLSVVSYGPQEVSNGL--RQA 146
Query: 478 GQ-------TATFQC----YVLNGGRSADHPDFFMANGGRASDSQRTTVEKLE------- 603
GQ +C YV +G PD + + T E E
Sbjct: 147 GQCMADEKACGNNECVKNDYVCDG-----EPDCRDRSDEANCPAISRTCEPNEFKCNNNK 201
Query: 604 -AGKVQLTYRAVTTNDNGTRFTCRKGRSSADVIVLVDPICTAGSRLCRN-GECINSAKFC 777
K+ L DN C SS+D C C + +C+ S+ C
Sbjct: 202 CVQKMWLCDGDDDCGDNSDELNCNAKPSSSD--------CKPTEFQCHDRRQCVPSSFHC 253
Query: 778 DGKRDCADGSDE 813
DG DC DGSDE
Sbjct: 254 DGTNDCHDGSDE 265
Score = 46.6 bits (109), Expect = 9e-05
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Frame = +1
Query: 91 ETKEAYIIVMAKSRTIEVNPNEETRRVGDGRPVEFHCRIGGYRTKNRDVVWTFMSKETGQ 270
E+ A +IV + R I ++P E+T V +G P + C + G+ + V TF + +GQ
Sbjct: 1585 ESNPARVIVKSPIRPI-IDPAEQT--VPEGSPFKIRCYVPGHPS----VQLTFR-RVSGQ 1636
Query: 271 ITPLESRWSRSDDPTADETSFII-LQQAELSDAGTYICT--EPDTRDTARS------ILN 423
+ + ADE + ++ +Q+AEL+D G YICT +PDT S + N
Sbjct: 1637 L-----------NEDADENNGLLAVQRAELTDEGDYICTARDPDTGAPIDSTPATVHVTN 1685
Query: 424 VISDLRI--------VVTPPIIKLRAGQTATFQCYVLNGGRSADHPDFFMANG 558
+ ++ V+TP + G A QC V +A H F +G
Sbjct: 1686 AAAPPQVEARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDG 1738
Score = 41.2 bits (95), Expect = 0.004
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Frame = +1
Query: 76 CKVKGE-TKEAYIIVMAKSRTIEVNPNEETRRVG-DGRPVEFHCRIGGYRTKNRDVVWTF 249
C+ G+ T E V + V E R++ G V + C++ GY T+ V WT
Sbjct: 1109 CEPIGQVTNEDITFVQKPHEVLRVRIMEPKRQIALPGDRVHWICQVTGYTTEKIHVEWT- 1167
Query: 250 MSKETGQITPLESRWSRSDDPTADE-TSFIILQQAELSDAGTYIC-----TEPDTRDTAR 411
+ G++ S P A +++L+ E +AG Y C T+ T D
Sbjct: 1168 ---KVGEM---------SLPPNAKAYDGYLVLKGVEAENAGQYRCTATTITQYATDDALL 1215
Query: 412 SILNVISDL--RIVVTPPIIKLRAGQTATFQCYV 507
+I IS + V+ PP + + G+ A F+C+V
Sbjct: 1216 TISKRISGRPPQPVIDPPHLVVNEGEPAAFRCWV 1249
Score = 40.8 bits (94), Expect = 0.005
Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 22/180 (12%)
Frame = +1
Query: 28 IMILQNIQQMNEGKYECKVKGETKEA---------YIIVMAKSRTIEVNPNE------ET 162
++ +Q + +EG Y C + A ++ A +E P + +T
Sbjct: 1647 LLAVQRAELTDEGDYICTARDPDTGAPIDSTPATVHVTNAAAPPQVEARPPQHPVITPQT 1706
Query: 163 RRVGDGRPVEFHCRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIIL 342
+ + +G P C + G + + + + + G+ P S +D+ + +
Sbjct: 1707 QTIPEGDPARIQCTVPGNPSAAQHLSF---ERVDGKGLPFGS---------SDDRGVLTI 1754
Query: 343 QQAELSDAGTYICT-EPDTRDTAR---SILNVISD---LRIVVTPPIIKLRAGQTATFQC 501
+L DAG Y+C P+ + S LNV + R V TPP++ + G A F C
Sbjct: 1755 PSTQLQDAGEYVCLYSPENSPPVKTNPSTLNVTPEGTPPRPVATPPLLSVAPGSPARFNC 1814
Score = 38.9 bits (89), Expect = 0.018
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Frame = +1
Query: 139 EVNPNEETRRVGDGRPVEFHCRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSD---- 306
+++P +T V D P +F C + G + +WSR D
Sbjct: 1417 QIDPPNQTVNVND--PAQFRCWVPGQPRA-------------------QLKWSRKDGRPL 1455
Query: 307 -DPTADETSFIILQQAELSDAGTYIC--TEPD----TRDTARSILNVISDLRIVVTPPII 465
+ + F+ + +++L DAG Y C TEPD AR +N ++ V PP+
Sbjct: 1456 PNGILERDGFLRIDKSQLHDAGEYECTSTEPDGSTQLSPPARLNVNQPQAIQPQVDPPVQ 1515
Query: 466 KLRAGQTATFQCYV 507
+ G+ + +C+V
Sbjct: 1516 TVNEGEPSRIRCWV 1529
Score = 38.1 bits (87), Expect = 0.031
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +1
Query: 13 RLYVSIMILQNIQQMNEGKYECKVKGETKEAYI-IVMAKSRTIEVNPNEETRR-----VG 174
+ Y ++L+ ++ N G+Y C T+ A ++ S+ I P + V
Sbjct: 1179 KAYDGYLVLKGVEAENAGQYRCTATTITQYATDDALLTISKRISGRPPQPVIDPPHLVVN 1238
Query: 175 DGRPVEFHCRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAE 354
+G P F C + G D T+ ++ G P + + + Q++
Sbjct: 1239 EGEPAAFRCWVPGIP----DCQITWHREQLGGPLP---------HGVYQTGNALKIPQSQ 1285
Query: 355 LSDAGTYICTEPDTRDTARSILNVISDLRIVVTPPIIKLR----AGQTATFQCYV 507
L AG YIC+ + T +S V+ + V+ P + +R Q A F+C+V
Sbjct: 1286 LHHAGRYICSAANQYGTGQSPPAVLEVKKPVIPPKVDPIRQTVDRDQPARFKCWV 1340
>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein
precursor (HSPG) (Perlecan) (PLC)
Length = 4391
Score = 49.3 bits (116), Expect = 1e-05
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 4/162 (2%)
Frame = +1
Query: 28 IMILQNIQQMNEGKYECKVKGETKEAYI---IVMAKSRTIEVNPNEETRRVGDGRPVEFH 198
++ +QN+ Q +G Y C+ G +A +V+ ++ +N + V G VEF
Sbjct: 3450 VLRIQNLDQSCQGTYICQAHGPWGKAQASAQLVIQALPSVLINIRTSVQTVVVGHAVEFE 3509
Query: 199 CRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSDAGTYI 378
C G V W SK G + P + + EL+DAG Y
Sbjct: 3510 CLALG--DPKPQVTW---SKVGGHLRP----------GIVQSGGVVRIAHVELADAGQYR 3554
Query: 379 CTEPDTRDTARS-ILNVISDLRIVVTPPIIKLRAGQTATFQC 501
CT + T +S +L ++ L + P +++ AG A F C
Sbjct: 3555 CTATNAAGTTQSHVLLLVQALPQISMPQEVRVPAGSAAVFPC 3596
Score = 45.1 bits (105), Expect = 3e-04
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Frame = +1
Query: 13 RLYVSIMILQNIQQMNEGKYECKVK---GETKEAYIIVMAKSRTIEVNPNEETRRVGDGR 183
+++ I+ L ++ ++ +Y C+ G+ ++ + V + E +V GR
Sbjct: 1912 QIHGGILRLPAVEPTDQAQYLCRAHSSAGQQVARAVLHVHGGGGPRVQVSPERTQVHAGR 1971
Query: 184 PVEFHCRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSD 363
V +CR G + + W KE G + P ++R R+D T +++ +D
Sbjct: 1972 TVRLYCRAAG--VPSATITWR---KEGGSLPP-QARSERTDIAT------LLIPAITTAD 2019
Query: 364 AGTYICTEPDTRDTARSILNVISDLRIVVTPPIIKLRA-------GQTATFQCYV 507
AG Y+C TA++ + V+ +PP +K+ + GQT C V
Sbjct: 2020 AGFYLCVATSPAGTAQARIQVVVLSASDASPPPVKIESSSPSVTEGQTLDLNCVV 2074
Score = 42.0 bits (97), Expect = 0.002
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C CRNG CI CDG+ DC DGSDE
Sbjct: 285 CGPQEAACRNGHCIPRDYLCDGQEDCEDGSDE 316
Score = 42.0 bits (97), Expect = 0.002
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Frame = +1
Query: 43 NIQQMNEGKYECKVKG----ETKEAYIIVM-AKSRTIEVNPNEE-TRRVGDGRPVEFHCR 204
++Q + G Y C + T A ++V A S+ I V E+ ++ V G V F C
Sbjct: 1735 SVQPSDAGVYICTCRNLHQSNTSRAELLVTEAPSKPITVTVEEQRSQSVRPGADVTFICT 1794
Query: 205 IGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSDAGTYICT 384
++ +VWT + + D + ++ +LSDAGTY+CT
Sbjct: 1795 AKS-KSPAYTLVWTRLHN------------GKLPTRAMDFNGILTIRNVQLSDAGTYVCT 1841
Query: 385 EPD--TRDTARSILNV-----ISDLRIVVTPPIIKLRAGQTATFQC 501
+ D + L+V +S + + PP + ++ GQ A F+C
Sbjct: 1842 GSNMFAMDQGTATLHVQASGTLSAPVVSIHPPQLTVQPGQLAEFRC 1887
Score = 39.7 bits (91), Expect = 0.011
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 2/142 (1%)
Frame = +1
Query: 28 IMILQNIQQMNEGKYECKVKGE--TKEAYIIVMAKSRTIEVNPNEETRRVGDGRPVEFHC 201
++ + +++ + G+Y C T +++++++ ++ P E RV G F C
Sbjct: 3539 VVRIAHVELADAGQYRCTATNAAGTTQSHVLLLVQALPQISMPQEV--RVPAGSAAVFPC 3596
Query: 202 RIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSDAGTYIC 381
GY T D+ W SK G + P +SR E + ++L DAGTY+C
Sbjct: 3597 IASGYPTP--DISW---SKLDGSLPP-DSRL---------ENNMLMLPSVRPQDAGTYVC 3641
Query: 382 TEPDTRDTARSILNVISDLRIV 447
T + + ++ ++ R+V
Sbjct: 3642 TATNRQGKVKAFAHLQVPERVV 3663
Score = 37.4 bits (85), Expect = 0.053
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Frame = +1
Query: 25 SIMILQNIQQMNEGKYECKVKGETKEAYIIVMAKSR---TIEVNPNEETRRVGDGRPVEF 195
SI+ + + N G Y C A +V T+ V P E V G+ V
Sbjct: 3074 SIITIVGTRPSNHGTYRCVASNAYGVAQSVVNLSVHGPPTVSVLP-EGPVWVKVGKAVTL 3132
Query: 196 HCRIGGY-RTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADETSFIILQQAELSDAGT 372
C G R+ R WT +S + LE R D + + + A+ SDAGT
Sbjct: 3133 ECVSAGEPRSSAR---WTRISSTPAK---LEQRTYG----LMDSHAVLQISSAKPSDAGT 3182
Query: 373 YICTEPDTRDTARSILNVISDL--------RIVVTPPIIKLRAGQTATFQC 501
Y+C + TA+ + VI D ++ + + AG TAT +C
Sbjct: 3183 YVCLAQNALGTAQKQVEVIVDTGAMAPGAPQVQAEEAELTVEAGHTATLRC 3233
Score = 32.7 bits (73), Expect = 1.3
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Frame = +1
Query: 244 TFMSKETGQITPLESRWSRSDDPTAD----ETSFIILQQAELSDAGTYIC--TEPDTRDT 405
T TG P WS+ P E +I+ + D+G YIC T P
Sbjct: 3230 TLRCSATGSPAPT-IHWSKLRSPLPWQHRLEGDTLIIPRVAQQDSGQYICNATSPAGHAE 3288
Query: 406 ARSILNVISDLRIVVTPPIIKLRAGQTATFQC 501
A IL+V S P ++AG+T QC
Sbjct: 3289 ATIILHVESPPYATTVPEHASVQAGETVQLQC 3320
Score = 31.2 bits (69), Expect = 3.8
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 712 PICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
P C C NG C CDG DC D +DE
Sbjct: 323 PPCEPNEFPCGNGHCALKLWRCDGDFDCEDRTDE 356
Score = 30.8 bits (68), Expect = 5.0
Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 26/189 (13%)
Frame = +1
Query: 28 IMILQNIQQMNEGKYECKVKGE--TKEAYIIVMAKSRTIEVNP----------NEETRRV 171
++ L + + G+Y C+V G T EA ++V + + P + V
Sbjct: 2877 LLRLNQVSPADSGEYSCQVTGSSGTLEASVLVTIEPSSPGPIPAPGLAQPIYIEASSSHV 2936
Query: 172 GDGRPVEFHCRIGGYRTKNRDVVWTFMSKETGQITPLESRWSRSDDPTADET--SFIILQ 345
+G+ ++ +C + G + V W K G + P +T S + L
Sbjct: 2937 TEGQTLDLNCVVPGQA--HAQVTWY---KRGGSL------------PARHQTHGSQLRLH 2979
Query: 346 QAELSDAGTYIC---TEPDTRDTARSILNV---------ISDLRIVVTPPIIKLRAGQTA 489
+D+G Y+C + P A + V + I + PP ++ GQ A
Sbjct: 2980 LVSPADSGEYVCRAASGPGPEQEASFTVTVPPSEGSSYRLRSPVISIDPPSSTVQQGQDA 3039
Query: 490 TFQCYVLNG 516
+F+C + +G
Sbjct: 3040 SFKCLIHDG 3048
>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related
protein-deleted in tumor) (LRP-DIT)
Length = 4599
Score = 48.5 bits (114), Expect = 2e-05
Identities = 25/62 (40%), Positives = 31/62 (50%)
Frame = +1
Query: 643 NDNGTRFTCRKGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQE 822
++NGT T G + + IC AG C+N CI + CDG DC DGSDED
Sbjct: 827 DENGTTCTFNPGEA-------LPHICKAGEFRCKNRHCIQARWKCDGDDDCLDGSDEDSV 879
Query: 823 FC 828
C
Sbjct: 880 NC 881
Score = 47.4 bits (111), Expect = 5e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
CT LC NG+C++S +CDG DCADGSDE
Sbjct: 3515 CTLKDFLCANGDCVSSRFWCDGDFDCADGSDE 3546
Score = 44.3 bits (103), Expect = 4e-04
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C + +C+NG CI S CD K DC DGSDE
Sbjct: 2891 CNSSFFMCKNGRCIPSGGLCDNKDDCGDGSDE 2922
Score = 42.4 bits (98), Expect = 0.002
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 673 KGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
K +S ++ + C G + C N CI K CDG+ DC D SDE
Sbjct: 2537 KDKSDEKLLYCENRSCRRGFKPCYNRRCIPHGKLCDGENDCGDNSDE 2583
Score = 40.4 bits (93), Expect = 0.006
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 712 PICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
P C++ +C + CI+++ C+G+ DCADGSDE
Sbjct: 3592 PTCSSREYICASDGCISASLKCNGEYDCADGSDE 3625
Score = 39.7 bits (91), Expect = 0.011
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Frame = +1
Query: 718 CTAGSRLCRN---------GECINSAKFCDGKRDCADGSDEDQEFCRLCDP 843
C RLC + G CIN A CDG DC D SDED LC P
Sbjct: 1088 CNGTIRLCDHKTKFSCWSTGRCINKAWVCDGDIDCEDQSDEDDCDSFLCGP 1138
Score = 38.5 bits (88), Expect = 0.024
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +1
Query: 715 ICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
IC A LC N C CDG+ DC D SDE + C
Sbjct: 3673 ICRADEFLCNNSLCKLHFWVCDGEDDCGDNSDEAPDMC 3710
Score = 37.7 bits (86), Expect = 0.041
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 736 LCRNGECINSAKFCDGKRDCADGSDE 813
+C++G CI+S CD DC DGSDE
Sbjct: 974 VCKSGRCISSKWHCDSDDDCGDGSDE 999
Score = 37.4 bits (85), Expect = 0.053
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 709 DPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
D C+ C +CI+ CDG+ DC DG DE C
Sbjct: 2717 DSSCSWNQFACSAQKCISKHWICDGEDDCGDGLDESDSIC 2756
Score = 36.2 bits (82), Expect = 0.12
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 715 ICTAGSRLCRNGE--CINSAKFCDGKRDCADGSDEDQEFCRLCD 840
+C C N C+ K C+GK+DC DGSDE LCD
Sbjct: 1135 LCGPPKHPCANDTSVCLQPEKLCNGKKDCPDGSDEGY----LCD 1174
Score = 36.2 bits (82), Expect = 0.12
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDE 813
C +G CI + CDG++DC DG DE
Sbjct: 2689 CPSGRCILNTWICDGQKDCEDGRDE 2713
Score = 35.8 bits (81), Expect = 0.15
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 715 ICTAGSRLCRNG-ECINSAKFCDGKRDCADGSDEDQEFC 828
+C G LC + C++ + CDG DC D SDE + C
Sbjct: 31 LCDPGEFLCHDHVTCVSQSWLCDGDPDCPDDSDESLDTC 69
Score = 35.8 bits (81), Expect = 0.15
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 718 CTAGSRLCR-NGECINSAKFCDGKRDCADGSDED--QEFCRLCD 840
C C +G C+ CDG++DC DGSDE RLCD
Sbjct: 1053 CNGNEFQCHPDGNCVPDLWRCDGEKDCEDGSDEKGCNGTIRLCD 1096
Score = 35.8 bits (81), Expect = 0.15
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 718 CTAGSRL-CRNGECINSAKFCDGKRDCADGSDEDQEFC 828
C A S C NGECI+ CDG C D SDE +C
Sbjct: 2510 CNAYSEFECGNGECIDYQLTCDGIPHCKDKSDEKLLYC 2547
Score = 35.4 bits (80), Expect = 0.20
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 682 SSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
S D + + C C+N CI CDG DC DE + C
Sbjct: 874 SDEDSVNCFNHSCPDDQFKCQNNRCIPKRWLCDGANDCGSNEDESNQTC 922
Score = 35.4 bits (80), Expect = 0.20
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Frame = +1
Query: 655 TRFTCRKGR---------------SSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKR 789
T+F C+ GR +D + V C C +G CI CDG
Sbjct: 971 TQFVCKSGRCISSKWHCDSDDDCGDGSDEVGCVHS-CFDNQFRCSSGRCIPGHWACDGDN 1029
Query: 790 DCADGSDEDQEFC 828
DC D SDE Q C
Sbjct: 1030 DCGDFSDEAQINC 1042
Score = 35.4 bits (80), Expect = 0.20
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C G C G C A CDG+ DC D SDE
Sbjct: 3357 CQPGRFQCGTGLCALPAFICDGENDCGDNSDE 3388
Score = 35.4 bits (80), Expect = 0.20
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLCDP 843
C+ C NG+CI + CDG DC G DE + C+P
Sbjct: 3553 CSKDQFRCSNGQCIPAKWKCDGHEDCKYGEDE-----KSCEP 3589
Score = 34.7 bits (78), Expect = 0.34
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRL--CDPL 846
C C NG CI A CD + DC D +DE C C+PL
Sbjct: 927 CQVDQFSCGNGRCIPRAWLCDREDDCGDQTDE-MASCEFPTCEPL 970
Score = 34.3 bits (77), Expect = 0.45
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQE 822
C + +C N CI CD DC DGSDE +
Sbjct: 2805 CDENAFMCHNKVCIPKQFVCDHDDDCGDGSDESPQ 2839
Score = 33.9 bits (76), Expect = 0.58
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 718 CTAGSRLCRNGE-CINSAKFCDGKRDCADGSDE 813
C A C+ C+ CDG+RDC DGSDE
Sbjct: 2761 CAADMFSCQGSRACVPRHWLCDGERDCPDGSDE 2793
Score = 33.9 bits (76), Expect = 0.58
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQE 822
CTA C+ +CI CD DC DGSDE +
Sbjct: 3317 CTASQFRCKTDKCIPFWWKCDTVDDCGDGSDEPDD 3351
Score = 33.9 bits (76), Expect = 0.58
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQ---EFCRLCD 840
C+N CI CD + DC+D SDE+ + C L D
Sbjct: 3483 CKNNNCIPDHWRCDSQNDCSDNSDEENCKPQTCTLKD 3519
Score = 33.9 bits (76), Expect = 0.58
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 661 FTCRKGRSSADVIVLVDPICTAGSRLCRN-GECINSAKFCDGKRDCADGSDED 816
+ C G D + C C+N CI CDG DC DGSDE+
Sbjct: 3617 YDCADGSDEMDCVTE----CKEDQFRCKNKAHCIPIRWLCDGIHDCVDGSDEE 3665
Score = 32.3 bits (72), Expect = 1.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 739 CRNGE-CINSAKFCDGKRDCADGSDED 816
CRN C+ S + C+G +C D SDED
Sbjct: 3723 CRNNRICLQSEQMCNGIDECGDNSDED 3749
Score = 32.0 bits (71), Expect = 2.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRL 834
C C N +CI CD DC DGSDE + CR+
Sbjct: 3762 CKKDEFACSNKKCIPMDLQCDRLDDCGDGSDE--QGCRI 3798
Score = 30.4 bits (67), Expect = 6.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C C +G CI + C+ DCAD SDE
Sbjct: 2591 CATVEFRCADGTCIPRSARCNQNIDCADASDE 2622
>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 48.1 bits (113), Expect = 3e-05
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
CT LC NG+C++S +CDG+ DCADGSDE
Sbjct: 3515 CTLKDFLCSNGDCVSSRFWCDGEFDCADGSDE 3546
Score = 44.7 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 21/38 (55%)
Frame = +1
Query: 715 ICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
IC G C+N CI + CDG DC DGSDED C
Sbjct: 844 ICKPGEFRCKNKHCIQARWKCDGDDDCLDGSDEDSVTC 881
Score = 43.1 bits (100), Expect = 0.001
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +1
Query: 712 PICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
P+C++ +C +G C++++ C+G+ DC DGSDE
Sbjct: 3592 PVCSSSEYMCASGGCLSASLKCNGEPDCVDGSDE 3625
Score = 42.0 bits (97), Expect = 0.002
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 673 KGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
K +S ++ + C +G + C N C+ K CDG DC D SDE
Sbjct: 2537 KDKSDEKLLYCENRSCRSGFKPCYNRRCVPHGKLCDGTNDCGDSSDE 2583
Score = 40.8 bits (94), Expect = 0.005
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C + +C+NG CI S CD + DC DGSDE
Sbjct: 2891 CNSSFFMCKNGRCIPSDGLCDIRDDCGDGSDE 2922
Score = 38.9 bits (89), Expect = 0.018
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 739 CRN-GECINSAKFCDGKRDCADGSDEDQEFCRLCDP 843
CR+ G CIN+A CDG DC D SDE+ LC P
Sbjct: 1103 CRSTGRCINNAWVCDGDVDCEDQSDEEDCDSFLCGP 1138
Score = 38.5 bits (88), Expect = 0.024
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 646 DNGTRFTCRKGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEF 825
D TC +G S IC LC N C CDG+ DC D SDE +
Sbjct: 3660 DGSDEETCGRGGS----------ICRDDEFLCNNSLCKLHFWVCDGEDDCGDNSDEAPDM 3709
Query: 826 C--RLCDP 843
C LC P
Sbjct: 3710 CVKFLCPP 3717
Score = 37.7 bits (86), Expect = 0.041
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 718 CTAGSRLCR-NGECINSAKFCDGKRDCADGSDED--QEFCRLCD 840
C CR +G CI CDG++DC DGSDE RLCD
Sbjct: 1053 CIGNEFQCRPDGNCIPDLWRCDGEKDCEDGSDEKGCNGTIRLCD 1096
Score = 36.6 bits (83), Expect = 0.090
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 682 SSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
S D + + C C+N CI CDG DC DE + C
Sbjct: 874 SDEDSVTCFNHSCPDDQFKCQNNRCIPKRWLCDGANDCGSNEDESNQTC 922
Score = 36.6 bits (83), Expect = 0.090
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE--DQEFCRLCDPL 846
C A C NG CI +A CD + DC D +DE EF C+PL
Sbjct: 927 CQADQFSCGNGRCIPTAWLCDREDDCGDQTDEVASCEF-PTCEPL 970
Score = 35.4 bits (80), Expect = 0.20
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 715 ICTAGSRLCRNG-ECINSAKFCDGKRDCADGSDEDQEFC 828
+C G LC + C++ + CDG DC D SDE + C
Sbjct: 31 LCDPGEFLCHDHVTCVSQSWLCDGDPDCPDQSDESLDTC 69
Score = 35.4 bits (80), Expect = 0.20
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDE 813
C +G CI + CDG++DC DG DE
Sbjct: 2689 CPSGRCILNTWVCDGQKDCEDGLDE 2713
Score = 35.4 bits (80), Expect = 0.20
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C G C G C A CDG+ DC D SDE
Sbjct: 3357 CQPGRFQCGTGLCALPAFICDGENDCGDNSDE 3388
Score = 35.4 bits (80), Expect = 0.20
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQ---EFCRLCD 840
C+N CI CD + DC+D SDED + C L D
Sbjct: 3483 CKNNNCIPDHWRCDNQNDCSDNSDEDNCKPQTCTLKD 3519
Score = 35.4 bits (80), Expect = 0.20
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLCDP 843
C+ C NG+C+++ CDG DC G DE + C+P
Sbjct: 3553 CSKDQFQCSNGQCLSAKWKCDGHEDCKYGEDE-----KNCEP 3589
Score = 34.7 bits (78), Expect = 0.34
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 754 CINSAKFCDGKRDCADGSDEDQEFCRLCD 840
C+ K C+G++DC DGSDE LCD
Sbjct: 1150 CLQPEKLCNGRKDCPDGSDEGD----LCD 1174
Score = 34.7 bits (78), Expect = 0.34
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 709 DPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
D C+ C +CI+ CDG+ DC D DE C
Sbjct: 2717 DSSCSWNQFACSVKKCISKHWICDGEDDCGDSLDESDSIC 2756
Score = 34.3 bits (77), Expect = 0.45
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 718 CTAGSRLCRNGE-CINSAKFCDGKRDCADGSDE 813
C A C+ C+ CDG+RDC DGSDE
Sbjct: 2761 CAADMFSCQGSHACVPQHWLCDGERDCPDGSDE 2793
Score = 33.9 bits (76), Expect = 0.58
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFC 828
C NG+C++ CDG C D SDE +C
Sbjct: 2518 CGNGDCVDYVLTCDGIPHCKDKSDEKLLYC 2547
Score = 33.9 bits (76), Expect = 0.58
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C + +C N CI CD DC DGSDE
Sbjct: 2805 CDENAFMCHNKVCIPKQFVCDHDDDCGDGSDE 2836
Score = 33.9 bits (76), Expect = 0.58
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQE 822
CTA C+ +CI CD DC DGSDE +
Sbjct: 3317 CTASQFRCKTDKCIPFWWKCDTVDDCGDGSDEPDD 3351
Score = 33.1 bits (74), Expect = 1.00
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 736 LCRNGECINSAKFCDGKRDCADGSDE 813
+C++G CI++ CD DC D SDE
Sbjct: 974 ICKSGRCISNKWHCDTDDDCGDRSDE 999
Score = 33.1 bits (74), Expect = 1.00
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFC 828
C +G CI CDG DC D SDE C
Sbjct: 1013 CSSGRCIPGHWACDGDNDCGDFSDETHINC 1042
Score = 32.0 bits (71), Expect = 2.2
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 667 CRKGRSSADVIVLVDPICTAGSRLCRN-GECINSAKFCDGKRDCADGSDED 816
C G D ++ C C+N CI CDG DC DGSDE+
Sbjct: 3619 CVDGSDEMDCVIE----CKEDQFQCKNKAYCIPIRWLCDGIYDCVDGSDEE 3665
Score = 32.0 bits (71), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 739 CRNGE-CINSAKFCDGKRDCADGSDED 816
CRN C+ K C+G DC D SDE+
Sbjct: 3723 CRNDRICLQLEKICNGINDCGDNSDEE 3749
Score = 32.0 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C C N CI CD DC DGSDE
Sbjct: 3762 CKKDEFTCSNRNCIPMELQCDSLDDCGDGSDE 3793
Score = 30.8 bits (68), Expect = 5.0
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 715 ICTAGSRLC-RNGECINSAKFCDGKRDCADGSDEDQEFCRLCDP 843
+C AG C +N +CI C+G+ DC D DE C P
Sbjct: 3395 VCLAGQFKCTKNKKCIPVNLRCNGQDDCGDEEDEKDCPENSCSP 3438
Score = 30.4 bits (67), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C+ C +G CI + C+ DC+D SDE
Sbjct: 2591 CSTVEFRCADGTCIPRSARCNQNMDCSDASDE 2622
Score = 30.4 bits (67), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 739 CRNGEC-INSAKFCDGKRDCADGSDE 813
C +G C +N+ CDG DC D SDE
Sbjct: 2852 CADGRCLVNTLWQCDGDFDCPDSSDE 2877
>sp|Q98930|SORL_CHICK Sortilin-related receptor (Sorting protein-related receptor
containing LDLR class A repeats) (SorLA) (SorLA-1)
(Low-density lipoprotein receptor relative with 11
ligand-binding repeats) (LDLR relative with 11
ligand-binding repeats) (LR11)
Length = 1592
Score = 47.8 bits (112), Expect = 4e-05
Identities = 27/72 (37%), Positives = 33/72 (45%)
Frame = +1
Query: 613 VQLTYRAVTTNDNGTRFTCRKGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRD 792
++L++R ND CR A+ + C A S C NG CI CDG D
Sbjct: 1078 IRLSWRCDDDND------CRDWSDEANCTMF--RTCEASSFQCLNGHCIPQRWACDGDAD 1129
Query: 793 CADGSDEDQEFC 828
C DGSDED C
Sbjct: 1130 CQDGSDEDPTIC 1141
Score = 47.8 bits (112), Expect = 4e-05
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +1
Query: 673 KGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDED 816
+G + V P C C +G CI ++ CDG RDCADGSDED
Sbjct: 1311 EGSPLLPITTAVPPTCLPNHFRCGSGACITNSWVCDGYRDCADGSDED 1358
Score = 40.4 bits (93), Expect = 0.006
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFCRLC 837
C NG CI+++K C+G DCAD SDE LC
Sbjct: 1150 CPNGTCISTSKHCNGITDCADASDEQDCEIPLC 1182
Score = 39.3 bits (90), Expect = 0.014
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLCD 840
C C NG CINS CD DC D SDE +CD
Sbjct: 985 CLPNQYRCFNGNCINSIWQCDNNNDCGDMSDEKNCPTTVCD 1025
Score = 37.7 bits (86), Expect = 0.041
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Frame = +1
Query: 472 RAGQTATFQCYVLNGG----RSADHPDFFMANGGRASDSQRTTVEKLEAGKVQLTYRAVT 639
R + ++FQC LNG R A D +G SD T EK G ++
Sbjct: 1103 RTCEASSFQC--LNGHCIPQRWACDGDADCQDG---SDEDPTICEKKCNGFQCPNGTCIS 1157
Query: 640 TNDNGTRFT-CRKGRSSADVIVLVDPICTAGSR-LCRNGE-CINSAKFCDGKRDCADGSD 810
T+ + T C D + P+CT +C+N + C++ + CDG C DGSD
Sbjct: 1158 TSKHCNGITDCADASDEQDCEI---PLCTRYMDFVCKNRQQCLSHSMVCDGDIQCEDGSD 1214
Query: 811 ED---------QEFCRLCD 840
ED EF R CD
Sbjct: 1215 EDANYAGCAQEPEFHRTCD 1233
Score = 35.8 bits (81), Expect = 0.15
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQ 819
C NG CI + CDG+ DC D SDE +
Sbjct: 1283 CGNGHCIPNQWKCDGENDCGDWSDEKE 1309
Score = 35.4 bits (80), Expect = 0.20
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 718 CTAGSRLCRNGE-CINSAKFCDGKRDCADGSDE 813
C G R C +GE C+ + + CDG DC+DGSDE
Sbjct: 1421 CPQGYR-CEDGEACLLATERCDGYLDCSDGSDE 1452
Score = 34.7 bits (78), Expect = 0.34
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C S C NG CI+ CDG DC D SDE
Sbjct: 1232 CDQFSFQCANGVCISLVWKCDGMDDCGDYSDE 1263
Score = 34.7 bits (78), Expect = 0.34
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 751 ECINSAKFCDGKRDCADGSDE 813
+CI + K CDG+RDC DG+DE
Sbjct: 1390 KCIPNWKRCDGRRDCQDGTDE 1410
Score = 30.0 bits (66), Expect = 8.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C C +G CI + CD DC D SDE
Sbjct: 1065 CRKDEFSCSSGMCIRLSWRCDDDNDCRDWSDE 1096
>sp|Q92673|SORL_HUMAN Sortilin-related receptor precursor (Sorting protein-related receptor
containing LDLR class A repeats) (SorLA) (SorLA-1)
(Low-density lipoprotein receptor relative with 11
ligand-binding repeats) (LDLR relative with 11
ligand-binding repeats) (LR11)
Length = 2214
Score = 47.4 bits (111), Expect = 5e-05
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFCRLCDPL 846
C NG CI S+K CDG RDC+DGSDE C+PL
Sbjct: 1244 CPNGTCIPSSKHCDGLRDCSDGSDEQH-----CEPL 1274
Score = 46.2 bits (108), Expect = 1e-04
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
C A + CRNG CI CDG DC DGSDED C
Sbjct: 1199 CEASNFQCRNGHCIPQRWACDGDTDCQDGSDEDPVNC 1235
Score = 40.4 bits (93), Expect = 0.006
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDED 816
C C +G C+ CDG RDCADGSDE+
Sbjct: 1419 CLPNYYRCSSGTCVMDTWVCDGYRDCADGSDEE 1451
Score = 40.0 bits (92), Expect = 0.008
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLCD 840
C C NG CINS +CD DC D SDE +CD
Sbjct: 1078 CLRNQYRCSNGNCINSIWWCDFDNDCGDMSDERNCPTTICD 1118
Score = 36.6 bits (83), Expect = 0.090
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C + C +G CI S+ CDG DC D SDE
Sbjct: 1158 CRSDEYNCSSGMCIRSSWVCDGDNDCRDWSDE 1189
Score = 35.4 bits (80), Expect = 0.20
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 667 CRKGRSSADVIVLVDPICTAGSRLCRNGE-CINSAKFCDGKRDCADGSDE 813
C+ GR A+ C + C +GE CI ++ CDG DC+D SDE
Sbjct: 1497 CQDGRDEANCPTHSTLTCMSREFQCEDGEACIVLSERCDGFLDCSDESDE 1546
Score = 34.7 bits (78), Expect = 0.34
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Frame = +1
Query: 709 DPICTAGSR-LCRNGE-CINSAKFCDGKRDCADGSDE---------DQEFCRLCD 840
+P+CT +C+N + C+ + CDG C DGSDE D EF ++CD
Sbjct: 1272 EPLCTHFMDFVCKNRQQCLFHSMVCDGIIQCRDGSDEDAAFAGCSQDPEFHKVCD 1326
Score = 34.7 bits (78), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 715 ICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
+C C+NG CI+ CDG DC D SDE
Sbjct: 1324 VCDEFGFQCQNGVCISLIWKCDGMDDCGDYSDE 1356
Score = 33.1 bits (74), Expect = 1.00
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDE 813
C NG CI + CD + DC D SDE
Sbjct: 1376 CENGHCIPNRWKCDRENDCGDWSDE 1400
Score = 30.8 bits (68), Expect = 5.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 754 CINSAKFCDGKRDCADGSDE 813
CI + K CDG +DC DG DE
Sbjct: 1484 CIPNWKRCDGHQDCQDGRDE 1503
>sp|Q95209|SORL_RABIT Sortilin-related receptor precursor (Sorting protein-related receptor
containing LDLR class A repeats) (SorLA) (SorLA-1)
(Low-density lipoprotein receptor relative with 11
ligand-binding repeats) (LDLR relative with 11
ligand-binding repeats) (LR11)
Length = 2213
Score = 46.6 bits (109), Expect = 9e-05
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
C A + CRNG CI CDG DC DGSDED C
Sbjct: 1198 CEASNFQCRNGHCIPQRWACDGDADCQDGSDEDPANC 1234
Score = 45.1 bits (105), Expect = 3e-04
Identities = 20/36 (55%), Positives = 22/36 (61%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFCRLCDPL 846
C NG CI S K CDG DC+DGSDE C+PL
Sbjct: 1243 CPNGTCIPSTKHCDGLHDCSDGSDEQH-----CEPL 1273
Score = 41.2 bits (95), Expect = 0.004
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 667 CRKGRS-SADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLCD 840
C KG + V + C C NG CINS +CD DC D SDE +CD
Sbjct: 1059 CPKGYELKNNTCVKEEDTCLRNQYRCSNGNCINSIWWCDFDNDCGDMSDEKNCPTTICD 1117
Score = 39.3 bits (90), Expect = 0.014
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDED 816
C C G C+ CDG RDCADGSDE+
Sbjct: 1418 CLPNYYRCGGGACVIDTWVCDGYRDCADGSDEE 1450
Score = 36.6 bits (83), Expect = 0.090
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C + C +G CI S+ CDG DC D SDE
Sbjct: 1157 CRSDEYNCSSGMCIRSSWVCDGDNDCRDWSDE 1188
Score = 35.0 bits (79), Expect = 0.26
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Frame = +1
Query: 709 DPICTAGSR-LCRNGE-CINSAKFCDGKRDCADGSDE---------DQEFCRLCD 840
+P+CT +C+N + C+ + CDG C DGSDE D EF ++CD
Sbjct: 1271 EPLCTRFMDFVCKNRQQCLFHSMVCDGIIQCRDGSDEDPAFAGCSRDPEFHKVCD 1325
Score = 34.7 bits (78), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 715 ICTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
+C C+NG CI+ CDG DC D SDE
Sbjct: 1323 VCDEFGFQCQNGVCISLIWKCDGMDDCGDYSDE 1355
Score = 33.9 bits (76), Expect = 0.58
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 667 CRKGRSSADVIVLVDPICTAGSRLCRNGE-CINSAKFCDGKRDCADGSDE 813
C+ G+ A+ C + C +GE CI ++ CDG DC+D SDE
Sbjct: 1496 CQDGQDEANCPTHSTLTCMSWEFKCEDGEACIVLSERCDGFLDCSDESDE 1545
Score = 32.3 bits (72), Expect = 1.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDE 813
C NG CI + CD + DC D SDE
Sbjct: 1375 CDNGHCIPNRWKCDRENDCGDWSDE 1399
Score = 30.4 bits (67), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 751 ECINSAKFCDGKRDCADGSDE 813
+CI + + CDG +DC DG DE
Sbjct: 1482 KCIPNWRRCDGHQDCQDGQDE 1502
>sp|P35952|LDLR_RAT Low-density lipoprotein receptor precursor (LDL receptor)
Length = 879
Score = 46.2 bits (108), Expect = 1e-04
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +1
Query: 700 VLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFC 828
V + C CR+G+CI S CDG R+C DGSDE E C
Sbjct: 21 VAAEDSCGKNEFQCRDGKCIVSKWVCDGSRECPDGSDESPETC 63
Score = 38.1 bits (87), Expect = 0.031
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFC 828
C + CI S CDG RDC DGSDE + C
Sbjct: 155 CNSSSCIPSLWACDGDRDCDDGSDEWPQNC 184
Score = 38.1 bits (87), Expect = 0.031
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 739 CRNGECINSAKFCDGKRDCADGSDEDQEFCR 831
C +GECI+ K C+ RDC D SDE + C+
Sbjct: 285 CHSGECISLDKVCNSARDCRDWSDEPIKECK 315
Score = 37.4 bits (85), Expect = 0.053
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +1
Query: 658 RFTCRKGRSSADVIVLVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLC 837
R C G D C+ C++G+CI+ CD DC DGSDE C
Sbjct: 92 RTDCENGSDELDCS---PKTCSLDEFRCQDGKCISRQFVCDQDWDCLDGSDEAHCAATTC 148
Query: 838 DP 843
P
Sbjct: 149 GP 150
Score = 37.0 bits (84), Expect = 0.069
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 703 LVDPICTAGSRLCRNGECINSAKFCDGKRDCADGSDEDQEFCRLCDP 843
+V C++ C + ECI+ + CDG DC D SDE+ C P
Sbjct: 193 VVSSPCSSLEFHCGSSECIHRSWVCDGAADCKDKSDEENCAVTTCRP 239
Score = 33.9 bits (76), Expect = 0.58
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 718 CTAGSRLCRNGECINSAKFCDGKRDCADGSDE 813
C C +G CI+ ++ CD + DC D SDE
Sbjct: 237 CRPDEFQCADGSCIHGSRQCDREHDCKDMSDE 268
Score = 32.3 bits (72), Expect = 1.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Frame = +1
Query: 721 TAGSRLCRNGE---------CINSAKFCDGKRDCADGSDE 813
T S CR+GE CI + CDG+ DC +GSDE
Sbjct: 62 TCMSVTCRSGEFSCGGRVSRCIPDSWRCDGRTDCENGSDE 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,371,738
Number of Sequences: 369166
Number of extensions: 1885665
Number of successful extensions: 6604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6561
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)