Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A03
(649 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZLL4|MUTS2_HELPJ MutS2 protein 30 4.1
sp|O25338|MUTS2_HELPY MutS2 protein 30 4.1
sp|Q90734|ACTN4_CHICK Alpha-actinin 4 (Non-muscle alpha-act... 30 5.4
sp|Q72LY9|ACSA_LEPIC Acetyl-coenzyme A synthetase (Acetate-... 29 9.2
sp|Q8EYG2|ACSA_LEPIN Acetyl-coenzyme A synthetase (Acetate-... 29 9.2
>sp|Q9ZLL4|MUTS2_HELPJ MutS2 protein
Length = 762
Score = 30.4 bits (67), Expect = 4.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 439 LCHAEDSGVAEEFVKSFLK 495
+CH + SG+ E+FVK FLK
Sbjct: 719 ICHGKGSGILEKFVKEFLK 737
>sp|O25338|MUTS2_HELPY MutS2 protein
Length = 762
Score = 30.4 bits (67), Expect = 4.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 439 LCHAEDSGVAEEFVKSFLK 495
+CH + SG+ E+FVK FLK
Sbjct: 719 ICHGKGSGILEKFVKEFLK 737
>sp|Q90734|ACTN4_CHICK Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
protein)
Length = 904
Score = 30.0 bits (66), Expect = 5.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Frame = +3
Query: 288 WELEISRLTKNLREVSDQIR-------QLVNMQKFRMEFNRQSKNRCGS 413
WE ++ + + + EV +QI MQ+FR FN K+ CG+
Sbjct: 729 WEQLLTTIARTINEVENQILTRDAKGISQEQMQEFRASFNHFDKDHCGA 777
>sp|Q72LY9|ACSA_LEPIC Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating
enzyme)
Length = 661
Score = 29.3 bits (64), Expect = 9.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 427 RGIYGDPQRFFDCLLNSIRNF 365
RG+YGDP+RFF+ + + +
Sbjct: 486 RGVYGDPKRFFETYFSQFKGY 506
>sp|Q8EYG2|ACSA_LEPIN Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating
enzyme)
Length = 661
Score = 29.3 bits (64), Expect = 9.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 427 RGIYGDPQRFFDCLLNSIRNF 365
RG+YGDP+RFF+ + + +
Sbjct: 486 RGVYGDPKRFFETYFSQFKGY 506
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,446,896
Number of Sequences: 369166
Number of extensions: 1366282
Number of successful extensions: 3339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3334
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)