Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_P18
(247 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R062|GLYG_MOUSE Glycogenin-1 59 3e-09
sp|O08730|GLYG_RAT Glycogenin-1 59 3e-09
sp|P13280|GLYG_RABIT Glycogenin-1 57 1e-08
sp|P46976|GLYG_HUMAN Glycogenin-1 56 2e-08
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 55 4e-08
sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1 39 0.005
sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2 33 0.27
sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH-type domain containi... 29 2.9
sp|Q6HBI3|CRCB1_BACHK Protein crcB homolog 1 29 3.8
sp|Q81XC1|CRCB1_BACAN Protein crcB homolog 1 29 3.8
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 58.9 bits (141), Expect = 3e-09
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = -1
Query: 247 AFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQLWWTT 74
+ YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L LWW T
Sbjct: 193 SIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVNCDSQDPTVSHPEFLNLWWDT 252
Query: 73 FIAYTKPLL 47
F PLL
Sbjct: 253 FTTNVLPLL 261
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 58.9 bits (141), Expect = 3e-09
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = -1
Query: 247 AFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQLWWTT 74
+ YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L LWW T
Sbjct: 193 SIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVKCESQDPIVSHPEFLNLWWDT 252
Query: 73 FIAYTKPLL 47
F PLL
Sbjct: 253 FTTNVLPLL 261
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 57.4 bits (137), Expect = 1e-08
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = -1
Query: 247 AFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQ--EGCGQNYESLQLWWTT 74
+ YSYLPA+ F A+ KV+HF+G KPW++T+D+ T +V + + + + L +WW
Sbjct: 193 SIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDI 252
Query: 73 FIAYTKPLL 47
F PLL
Sbjct: 253 FTTSVVPLL 261
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 56.2 bits (134), Expect = 2e-08
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -1
Query: 247 AFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNY---ESLQLWWT 77
+ YSYLPA+ F A KV+HF+G KPW++T+D T +V E N E L LWW
Sbjct: 193 SIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSV-KSEAHDPNMTHPEFLILWWN 251
Query: 76 TFIAYTKPLL 47
F PLL
Sbjct: 252 IFTTNVLPLL 261
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 55.5 bits (132), Expect = 4e-08
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Frame = -1
Query: 241 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNYES---LQLWWTTF 71
Y+Y PA+ F + KV+HF+G KPW++ ++ +G+V+ Q + L LWWT +
Sbjct: 228 YTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSVSSSQHQAAFLHLWWTVY 287
Query: 70 IAYTKP-----------------LLHDEMGGVCGRMAS 8
P L H ++GG C AS
Sbjct: 288 QNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSAS 325
>sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1
Length = 480
Score = 38.5 bits (88), Expect = 0.005
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 241 YSYLPAYTHFRADIKVLHFIGPHKPW 164
Y PA +F+ IK++HFIG HKPW
Sbjct: 94 YQSSPAMNYFKPSIKLIHFIGKHKPW 119
>sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2
Length = 380
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 241 YSYLPAYTHFRADIKVLHFIGPHKPW-HHTFDSD 143
Y PA F+ I+++HFIG KPW +T D D
Sbjct: 232 YQSSPAMNFFQQHIRLIHFIGTFKPWSRNTTDYD 265
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH-type domain containing protein 3
Length = 950
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 14 HSTTYSSHFIME*RLGVGDESGPPELKRFI--ILPTTFLENHSARV*IKCVVPRFMGSN 184
HST+YS FI + R G P L + + P T + A + + C +F +N
Sbjct: 249 HSTSYSEQFIGDQRANTGHSDQPASLGPVVASVRPATARQVREASLLVSCRTSKFRKNN 307
>sp|Q6HBI3|CRCB1_BACHK Protein crcB homolog 1
Length = 137
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 175 HKPWHHTFDSDTGTVIFQEGCGQNYESLQLWWTTFIAYTKPLLHDEMGGV 26
H+ WHHTF T +I GC L W TT+IA L D + G+
Sbjct: 28 HEFWHHTFPLAT-LLINLAGC-----FLLAWLTTYIAKRNLLPSDVITGI 71
>sp|Q81XC1|CRCB1_BACAN Protein crcB homolog 1
Length = 137
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 175 HKPWHHTFDSDTGTVIFQEGCGQNYESLQLWWTTFIAYTKPLLHDEMGGV 26
H+ WHHTF T +I GC L W TT+IA L D + G+
Sbjct: 28 HEFWHHTFPLAT-LLINLAGC-----FLLAWLTTYIAKLNILPSDVITGI 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,727,123
Number of Sequences: 369166
Number of extensions: 697057
Number of successful extensions: 1525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)