Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_P13
(615 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 50 5e-06
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 46 7e-05
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 46 7e-05
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 46 7e-05
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 46 7e-05
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 46 9e-05
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 45 1e-04
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 45 1e-04
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 45 1e-04
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 45 1e-04
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 50.1 bits (118), Expect = 5e-06
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ D+ +D+FVH DGE+V FD+V+G KG EA NVTGP G +V
Sbjct: 49 INRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQ 108
Query: 176 GGK 184
G K
Sbjct: 109 GSK 111
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 46.2 bits (108), Expect = 7e-05
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP G V
Sbjct: 53 INRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQ 112
Query: 176 GGK 184
G K
Sbjct: 113 GSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 46.2 bits (108), Expect = 7e-05
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP G V
Sbjct: 73 INRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQ 132
Query: 176 GGK 184
G K
Sbjct: 133 GSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 46.2 bits (108), Expect = 7e-05
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP G V
Sbjct: 75 INRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQ 134
Query: 176 GGK 184
G K
Sbjct: 135 GSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 46.2 bits (108), Expect = 7e-05
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP G V
Sbjct: 72 INRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQ 131
Query: 176 GGK 184
G K
Sbjct: 132 GSK 134
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 45.8 bits (107), Expect = 9e-05
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP GG +
Sbjct: 110 INRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP-GGVPV 168
Query: 176 GGKPYEP 196
G Y P
Sbjct: 169 KGSRYAP 175
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 45.4 bits (106), Expect = 1e-04
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP+G V
Sbjct: 99 INRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVE 158
Query: 176 GGK 184
G +
Sbjct: 159 GSR 161
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 45.4 bits (106), Expect = 1e-04
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ +++ +D+FVH DGE V FD+V+G KG EA NVTGP G V
Sbjct: 58 INRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVK 117
Query: 176 GGK 184
G +
Sbjct: 118 GSR 120
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 45.4 bits (106), Expect = 1e-04
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP+G V
Sbjct: 107 INRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVE 166
Query: 176 GGK 184
G +
Sbjct: 167 GSR 169
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 45.4 bits (106), Expect = 1e-04
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 8 VDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVTGPNGGDVI 175
++ ++ +D+FVH DGE V FD+V+G KG EA NVTGP+G V
Sbjct: 99 INRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVE 158
Query: 176 GGK 184
G +
Sbjct: 159 GSR 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,782,028
Number of Sequences: 369166
Number of extensions: 718173
Number of successful extensions: 2906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2583
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)