Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_P12
(837 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61962|WDR68_HUMAN WD-repeat protein 68 (WD-repeat prote... 397 e-110
sp|Q9XGN1|TTG1_ARATH TRANSPARENT TESTA GLABRA 1 protein (TT... 254 2e-67
sp|O14021|PRW1_SCHPO RbAp48-related WD40-repeat protein prw1 58 3e-08
sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein li... 58 4e-08
sp|O22469|MSI3_ARATH WD-40 repeat protein MSI3 53 9e-07
sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C... 51 3e-06
sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C... 51 5e-06
sp|O22607|MSI4_ARATH WD-40 repeat protein MSI4 50 1e-05
sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subu... 49 1e-05
sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subu... 49 1e-05
>sp|P61962|WDR68_HUMAN WD-repeat protein 68 (WD-repeat protein An11 homolog)
sp|P61963|WDR68_MOUSE WD-repeat protein 68 (WD-repeat protein An11 homolog)
Length = 342
Score = 397 bits (1021), Expect = e-110
Identities = 181/230 (78%), Positives = 204/230 (88%)
Frame = +1
Query: 1 SNKNSDFCAPLTSFDWNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIA 180
+NKNSDFCAPLTSFDWNE+DP +LGTSSIDTTCTIW LETGQV+GR V+G+VKTQLIA
Sbjct: 113 NNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIA 172
Query: 181 HDKEVYDIAFTKAGGGRDIFASVGADASVRMFDLRHLEHSTIIYEDPNKSALLRLAWNKQ 360
HDKEVYDIAF++AGGGRD+FASVGAD SVRMFDLRHLEHSTIIYEDP LLRL WNKQ
Sbjct: 173 HDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQ 232
Query: 361 DANYLATFTLNSPEIIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQAL 540
D NYLAT ++ E+++LD+RVPCTPVARLNNHR CVNG+AWAPHSSCH+C+ A+D QAL
Sbjct: 233 DPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQAL 292
Query: 541 IWDITNMPRAIEDPILAYTAAGEINQIQWSSLQPDWISICYTSALEILRV 690
IWDI MPRAIEDPILAYTA GEIN +QW+S QPDWI+ICY + LEILRV
Sbjct: 293 IWDIQQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342
>sp|Q9XGN1|TTG1_ARATH TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein)
Length = 341
Score = 254 bits (649), Expect = 2e-67
Identities = 127/233 (54%), Positives = 163/233 (69%), Gaps = 3/233 (1%)
Frame = +1
Query: 1 SNKNSDFCAPLTSFDWNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIA 180
++K S+FCAPLTSFDWN+++P LGT SIDTTCTIW +E V +TQLIA
Sbjct: 125 NSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVV-----------ETQLIA 173
Query: 181 HDKEVYDIAFTKAGGGRDIFASVGADASVRMFDLRHLEHSTIIYEDPNKSA-LLRLAWNK 357
HDKEV+DIA+ +A +FASV AD SVR+FDLR EHSTIIYE P LLRLAWNK
Sbjct: 174 HDKEVHDIAWGEAR----VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 229
Query: 358 QDANYLATFTLNSPEIIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQA 537
QD Y+AT ++S ++++LD+R P PVA L H+ VN +AWAP S H+CSG +D QA
Sbjct: 230 QDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQA 289
Query: 538 LIWDITNM--PRAIEDPILAYTAAGEINQIQWSSLQPDWISICYTSALEILRV 690
LIW++ + P I DP+ Y+A EINQ+QWSS QPDWI I + + +++LRV
Sbjct: 290 LIWELPTVAGPNGI-DPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341
>sp|O14021|PRW1_SCHPO RbAp48-related WD40-repeat protein prw1
Length = 431
Score = 58.2 bits (139), Expect = 3e-08
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Frame = +1
Query: 28 PLTSFDWNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIA 207
P TS WN + L + S D T + W L + +K + +H+K+V D+
Sbjct: 186 PCTSVCWNFLSKGTLVSGSQDATLSCWDLNAYN----ESDSASVLKVHISSHEKQVSDVR 241
Query: 208 FTKAGGGRDIFASVGADASVRMFDLRHLEHSTIIYED--PNKSALLRLAWNKQDANYLAT 381
F +D+ ASV D + + D+R + ST + + +A+N + LAT
Sbjct: 242 FHYKH--QDLLASVSYDQYLHVHDIRRPDASTKPARSVHAHSGPIHSVAFNPHNDFILAT 299
Query: 382 FTLNSPEIIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNM 561
+ + I + D+R + L H V ++++PH L S + D + L+WD++ +
Sbjct: 300 CSTDKT-IALWDLRNLNQRLHTLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSRI 358
>sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein lin-53 (Abnormal cell lineage
protein 53)
Length = 385
Score = 57.8 bits (138), Expect = 4e-08
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 10/225 (4%)
Frame = +1
Query: 46 WNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGG 225
WN ++ ++S D T W + Q + Q K H+ V D+A+
Sbjct: 148 WNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFK----GHESVVEDVAWHVLHD 203
Query: 226 GRDIFASVGADASVRMFDLRHLEHSTIIYEDPNKSALLRLAWNKQDANYLATFTLNSPEI 405
G +F SVG D + ++D+R I D + + + LA+N LAT + + +
Sbjct: 204 G--VFGSVGDDKKLLIWDVRTSTPGHCI--DAHSAEVNCLAFNPYSEFILATGSADKT-V 258
Query: 406 IVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNM--PRAIED 579
+ D+R + +HR + V W+PH+ L S D + +WD++ + ++ ED
Sbjct: 259 ALWDLRNLRMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAED 318
Query: 580 -----PILAYTAAG---EINQIQWSSLQPDWISICYTSALEILRV 690
P L + G +I+ W+ +P W+ +C S IL+V
Sbjct: 319 AEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-VCSVSEDNILQV 361
Score = 37.4 bits (85), Expect = 0.052
Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 6/195 (3%)
Frame = +1
Query: 64 NILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGGGRDIFA 243
NI+ T S I+ + R T N +L H KE Y +++ G +
Sbjct: 102 NIIATKSPHADVYIFDYLKHSAVPRDN--TFNPLIRLKGHTKEGYGLSWNPNKEG--LIL 157
Query: 244 SVGADASVRMFDLRHLEH------STIIYEDPNKSALLRLAWNKQDANYLATFTLNSPEI 405
S D +V +D+ ++ + +++ ++S + +AW+ + + ++
Sbjct: 158 SASDDQTVCHWDINANQNVAGELQAKDVFKG-HESVVEDVAWHVLHDGVFGSVG-DDKKL 215
Query: 406 IVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNMPRAIEDPI 585
++ D+R TP ++ H VN +A+ P+S L +G+ D +WD+ N+ +
Sbjct: 216 LIWDVRTS-TPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHS-- 272
Query: 586 LAYTAAGEINQIQWS 630
+ EI Q+QWS
Sbjct: 273 -FESHRDEIFQVQWS 286
>sp|O22469|MSI3_ARATH WD-40 repeat protein MSI3
Length = 424
Score = 53.1 bits (126), Expect = 9e-07
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 16/228 (7%)
Frame = +1
Query: 46 WNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGG 225
W+ L + S D +W V T N H + D+A+
Sbjct: 177 WSSFKEGYLLSGSQDQRICLWD-----VSATATDKVLNPMHVYEGHQSIIEDVAWHMKN- 230
Query: 226 GRDIFASVGADASVRMFDLR--HLEHSTIIYEDPNKSALLRLAWNKQDANYLATFTLNSP 399
+IF S G D + ++DLR ++H ++E + L++N + LAT + +S
Sbjct: 231 -ENIFGSAGDDCQLVIWDLRTNQMQHQVKVHE----REINYLSFNPFNEWVLATASSDST 285
Query: 400 EIIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDIT-------N 558
+ + D+R P+ L+ H G V V W P+ L S ED + ++WDI
Sbjct: 286 -VALFDLRKLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLE 344
Query: 559 MPRAIED--PILAYTAAG---EINQIQWSSLQPDWI--SICYTSALEI 681
+ ED P L ++ G +I+ W+ +P W+ S+ ++L++
Sbjct: 345 IELDAEDGPPELLFSHGGHKAKISDFAWNKDEP-WVISSVAEDNSLQV 391
Score = 33.9 bits (76), Expect = 0.57
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 430 CTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDIT 555
C P RL H G+AW+ +L SG++D + +WD++
Sbjct: 159 CDPDLRLMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVS 200
>sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
Length = 461
Score = 51.2 bits (121), Expect = 3e-06
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 14/229 (6%)
Frame = +1
Query: 46 WNEIDPNILG---TSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTK 216
WN PN+ G ++S D T +W + G+ + KT H V D+++
Sbjct: 185 WN---PNLSGHLLSASDDHTICLWDISAVPKKGKVV----DAKTIFTGHTAVVEDVSWHL 237
Query: 217 AGGGRDIFASVGADASVRMFDLRHLEHSTIIYE-DPNKSALLRLAWNKQDANYLATFTLN 393
+F SV D + ++D R S + D + + + L++N LAT + +
Sbjct: 238 LH--ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 394 SPEIIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNM---- 561
+ + D+R + +H+ + V W+PH+ L S D + +WD++ +
Sbjct: 296 KT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 562 -PRAIED--PILAYTAAG---EINQIQWSSLQPDWISICYTSALEILRV 690
P ED P L + G +I+ W+ +P W+ IC S I++V
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-ICSVSEDNIMQV 401
Score = 40.4 bits (93), Expect = 0.006
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 430 CTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNMPR 567
C P RL H+ G++W P+ S HL S ++D +WDI+ +P+
Sbjct: 167 CNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK 212
>sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)
Length = 425
Score = 50.8 bits (120), Expect = 5e-06
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 14/229 (6%)
Frame = +1
Query: 46 WNEIDPNILG---TSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTK 216
WN PN+ G ++S D T +W + G+ + KT H V D+++
Sbjct: 185 WN---PNLSGHLLSASDDHTICLWDISAVPKEGKVV----DAKTIFTGHTAVVEDVSWHL 237
Query: 217 AGGGRDIFASVGADASVRMFDLRHLEHSTIIYE-DPNKSALLRLAWNKQDANYLATFTLN 393
+F SV D + ++D R S + D + + + L++N LAT + +
Sbjct: 238 LH--ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 394 SPEIIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNM---- 561
+ + D+R + +H+ + V W+PH+ L S D + +WD++ +
Sbjct: 296 KT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 562 -PRAIED--PILAYTAAG---EINQIQWSSLQPDWISICYTSALEILRV 690
P ED P L + G +I+ W+ +P W+ IC S I++V
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-ICSVSEDNIMQV 401
Score = 40.4 bits (93), Expect = 0.006
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 430 CTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNMPR 567
C P RL H+ G++W P+ S HL S ++D +WDI+ +P+
Sbjct: 167 CNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK 212
>sp|O22607|MSI4_ARATH WD-40 repeat protein MSI4
Length = 507
Score = 49.7 bits (117), Expect = 1e-05
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Frame = +1
Query: 115 ETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGGGRDIFASVGADASVRMFDLRHLE 294
+TG+ + T + H+ V D+AF+ F SVG D+ + ++D R
Sbjct: 269 QTGEGTDKNESPTVGPRGVYHGHEDTVEDVAFSPTSAQE--FCSVGDDSCLILWDARTGT 326
Query: 295 HSTIIYEDPNKSALLRLAWNKQDANYLATFTLNSPEIIVLDMRVPC-----TPVARLNNH 459
+ E + + L + WN D N + T + ++ + + D R +P+ + H
Sbjct: 327 NPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNT-VRLFDRRKLTANGVGSPIYKFEGH 385
Query: 460 RGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNM----PRAIEDPI-LAYTAAGEINQI- 621
+ V V W+P S S AED IWD + RA + P L + AG +++
Sbjct: 386 KAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKSPAGLFFQHAGHRDKVV 445
Query: 622 --QWSSLQP 642
W++ P
Sbjct: 446 DFHWNASDP 454
>sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein P46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 49.3 bits (116), Expect = 1e-05
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)
Frame = +1
Query: 46 WNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGG 225
WN L ++S D T +W + G G+ + K H V D+A+
Sbjct: 184 WNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV----DAKAIFTGHSAVVEDVAWHLLH- 238
Query: 226 GRDIFASVGADASVRMFDLRHLEHSTIIY-EDPNKSALLRLAWNKQDANYLATFTLNSPE 402
+F SV D + ++D R S + D + + + L++N LAT + +
Sbjct: 239 -ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT- 296
Query: 403 IIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNM--PRAIE 576
+ + D+R + +H+ + V W+PH+ L S D + +WD++ + ++ E
Sbjct: 297 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 356
Query: 577 D-----PILAYTAAG---EINQIQWSSLQPDWISICYTSALEILRV 690
D P L + G +I+ W+ +P W+ IC S I+++
Sbjct: 357 DAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-ICSVSEDNIMQI 400
Score = 36.6 bits (83), Expect = 0.088
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +1
Query: 340 RLAWNKQDANYLATFTLNSPEIIVLDMRVP--------CTPVARLNNHRGCVNGVAWAPH 495
R + Q+ + +AT T +S ++ + P C P RL H+ G++W +
Sbjct: 128 RARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 187
Query: 496 SSCHLCSGAEDCQALIWDITNMPR 567
S HL S ++D +WDI P+
Sbjct: 188 LSGHLLSASDDHTVCLWDINAGPK 211
Score = 34.7 bits (78), Expect = 0.33
Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 13/182 (7%)
Frame = +1
Query: 46 WNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGG 225
W+ + ++ G+ + D IW + T + AH EV ++F
Sbjct: 234 WHLLHESLFGSVADDQKLMIWDTRSN--------TTSKPSHLVDAHTAEVNCLSFNPYS- 284
Query: 226 GRDIFASVGADASVRMFDLRHLEHSTIIYEDPNKSALLRLAWNKQDANYLATFTLNSPEI 405
I A+ AD +V ++DLR+L+ +E +K + ++ W+ + LA+ + +
Sbjct: 285 -EFILATGSADKTVALWDLRNLKLKLHTFES-HKDEIFQVHWSPHNETILASSGTDR-RL 341
Query: 406 IVLDMRV-------------PCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIW 546
V D+ P + H ++ +W P+ +CS +ED IW
Sbjct: 342 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 401
Query: 547 DI 552
+
Sbjct: 402 QM 403
>sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein p46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 49.3 bits (116), Expect = 1e-05
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)
Frame = +1
Query: 46 WNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGG 225
WN L ++S D T +W + G G+ + K H V D+A+
Sbjct: 184 WNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV----DAKAIFTGHSAVVEDVAWHLLH- 238
Query: 226 GRDIFASVGADASVRMFDLRHLEHSTIIY-EDPNKSALLRLAWNKQDANYLATFTLNSPE 402
+F SV D + ++D R S + D + + + L++N LAT + +
Sbjct: 239 -ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT- 296
Query: 403 IIVLDMRVPCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIWDITNM--PRAIE 576
+ + D+R + +H+ + V W+PH+ L S D + +WD++ + ++ E
Sbjct: 297 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 356
Query: 577 D-----PILAYTAAG---EINQIQWSSLQPDWISICYTSALEILRV 690
D P L + G +I+ W+ +P W+ IC S I+++
Sbjct: 357 DAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-ICSVSEDNIMQI 400
Score = 36.6 bits (83), Expect = 0.088
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +1
Query: 340 RLAWNKQDANYLATFTLNSPEIIVLDMRVP--------CTPVARLNNHRGCVNGVAWAPH 495
R + Q+ + +AT T +S ++ + P C P RL H+ G++W +
Sbjct: 128 RARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 187
Query: 496 SSCHLCSGAEDCQALIWDITNMPR 567
S HL S ++D +WDI P+
Sbjct: 188 LSGHLLSASDDHTVCLWDINAGPK 211
Score = 34.7 bits (78), Expect = 0.33
Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 13/182 (7%)
Frame = +1
Query: 46 WNEIDPNILGTSSIDTTCTIWSLETGQVMGRTTQVTGNVKTQLIAHDKEVYDIAFTKAGG 225
W+ + ++ G+ + D IW + T + AH EV ++F
Sbjct: 234 WHLLHESLFGSVADDQKLMIWDTRSN--------TTSKPSHLVDAHTAEVNCLSFNPYS- 284
Query: 226 GRDIFASVGADASVRMFDLRHLEHSTIIYEDPNKSALLRLAWNKQDANYLATFTLNSPEI 405
I A+ AD +V ++DLR+L+ +E +K + ++ W+ + LA+ + +
Sbjct: 285 -EFILATGSADKTVALWDLRNLKLKLHTFES-HKDEIFQVHWSPHNETILASSGTDR-RL 341
Query: 406 IVLDMRV-------------PCTPVARLNNHRGCVNGVAWAPHSSCHLCSGAEDCQALIW 546
V D+ P + H ++ +W P+ +CS +ED IW
Sbjct: 342 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 401
Query: 547 DI 552
+
Sbjct: 402 QM 403
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,727,071
Number of Sequences: 369166
Number of extensions: 1920699
Number of successful extensions: 5537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5452
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)