Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_P03
(362 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P65633|ODO2_MYCTU Dihydrolipoyllysine-residue succinyltr... 31 1.0
sp|Q9ET22|DPP2_MOUSE Dipeptidyl-peptidase II precursor (DPP... 30 2.3
sp|Q9UHL4|DPP2_HUMAN Dipeptidyl-peptidase II precursor (DPP... 29 3.0
sp|P12036|NFH_HUMAN Neurofilament triplet H protein (200 kD... 29 3.9
>sp|P65633|ODO2_MYCTU Dihydrolipoyllysine-residue succinyltransferase component of
2-oxoglutarate dehydrogenase complex (E2)
(Dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase complex)
sp|P65634|ODO2_MYCBO Dihydrolipoyllysine-residue succinyltransferase component of
2-oxoglutarate dehydrogenase complex (E2)
(Dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase complex)
Length = 553
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 66 VGASPNPKEAKSPTPERAKSPK*KNTP 146
+GA+P PK A P PE A +PK + P
Sbjct: 201 IGAAPAPKPAPKPVPEPAPTPKAEPAP 227
>sp|Q9ET22|DPP2_MOUSE Dipeptidyl-peptidase II precursor (DPP II) (Dipeptidyl
aminopeptidase II) (Quiescent cell proline dipeptidase)
(Dipeptidyl peptidase 7)
Length = 506
Score = 29.6 bits (65), Expect = 2.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 141 CFFIWAIWPSQGWVISLLWG 82
C W +WP Q W+ + WG
Sbjct: 392 CLDTWGVWPRQDWLQTSFWG 411
>sp|Q9UHL4|DPP2_HUMAN Dipeptidyl-peptidase II precursor (DPP II) (Dipeptidyl
aminopeptidase II) (Quiescent cell proline dipeptidase)
(Dipeptidyl peptidase 7)
Length = 492
Score = 29.3 bits (64), Expect = 3.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -3
Query: 141 CFFIWAIWPSQGWVISLLWG 82
C W +WP W+++ WG
Sbjct: 382 CLDTWGVWPRPDWLLTSFWG 401
>sp|P12036|NFH_HUMAN Neurofilament triplet H protein (200 kDa neurofilament protein)
(Neurofilament heavy polypeptide) (NF-H)
Length = 1026
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 81 NPKEAKSPTPERAKSPK*KNTP 146
+P++AKSPT E AKSP+ +P
Sbjct: 634 SPEKAKSPTKEEAKSPEKAKSP 655
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,244,255
Number of Sequences: 369166
Number of extensions: 565153
Number of successful extensions: 2034
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)