Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O23
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 42 0.002
sp|O59426|RS17_PYRHO 30S ribosomal protein S17P 32 3.0
sp|P06182|CCHL_YEAST Cytochrome c heme lyase (CCHL) (Holocy... 31 3.9
sp|Q9V1U5|RS17_PYRAB 30S ribosomal protein S17P 31 3.9
sp|P53091|MCM6_YEAST DNA replication licensing factor MCM6 ... 31 5.0
sp|P50275|ASE1_YEAST Anaphase spindle elongation protein 31 5.0
sp|Q27152|DPOLA_OXYTR DNA polymerase alpha catalytic subunit 31 5.0
sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase ... 30 8.6
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 464 VLPRAPYSPDMSLCDFFLFPRLKFHLRGKRFESIEAIKEKSLRELNVISILEYQNCFQNW 643
VLP PYSPD++ D+ LF L ++R K+F+ E +K EL+ + F
Sbjct: 176 VLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLK----TELSTFFSSRSPDFFSRG 231
Query: 644 I----NRWNLCITSKGEY 685
I ++W + + GEY
Sbjct: 232 IMMLPSKWQQVVDTNGEY 249
>sp|O59426|RS17_PYRHO 30S ribosomal protein S17P
Length = 116
Score = 31.6 bits (70), Expect = 3.0
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 146 LTIEQSSEWCMENEPKPKKPRQSHSKIKVLVTVFMDYQGVVLSEFLPAGQTVNKEYYLGL 325
L I+ +E C + PK P H KI V ++G+V+S+ TV ++YY L
Sbjct: 10 LRIQPPAEKCDD----PKCPWHGHLKIHGRV-----FEGIVISDKPRKTVTVERQYYHYL 60
Query: 326 MKRLRENIRRKR 361
K R +RR R
Sbjct: 61 KKYERYELRRSR 72
>sp|P06182|CCHL_YEAST Cytochrome c heme lyase (CCHL) (Holocytochrome-C synthase)
Length = 269
Score = 31.2 bits (69), Expect = 3.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 556 KPFTPEVELQpre*KKVAERHVR*IRRSWKHVCGV-----FDQKVPF 431
KP T E +QP+ K + + V R W H+CG+ F Q++PF
Sbjct: 144 KPHTDESHVQPKLLKFMGKPGVLSPRARWMHLCGLLFPSHFSQELPF 190
>sp|Q9V1U5|RS17_PYRAB 30S ribosomal protein S17P
Length = 116
Score = 31.2 bits (69), Expect = 3.9
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 146 LTIEQSSEWCMENEPKPKKPRQSHSKIKVLVTVFMDYQGVVLSEFLPAGQTVNKEYYLGL 325
L I+ +E C + PK P H KI V ++G+V+S+ TV ++YY L
Sbjct: 10 LRIQPPAEKCDD----PKCPWHGHLKIHGRV-----FEGIVVSDKPRKTVTVERQYYHYL 60
Query: 326 MKRLRENIRRKR 361
K R +RR R
Sbjct: 61 KKYERYELRRSR 72
>sp|P53091|MCM6_YEAST DNA replication licensing factor MCM6 (Minichromosome maintenance
protein 6)
Length = 1017
Score = 30.8 bits (68), Expect = 5.0
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 221 KIKVLVTVFMDYQGVVLSEFLPAGQTVNKEYY---LGLMKRLRENIRRKRPEL 370
KI L T+++DYQ + + E ++++YY L K LR +R+ PEL
Sbjct: 144 KIYDLNTIYIDYQHLSMRENGALAMAISEQYYRFLAFLQKGLRRVVRKYAPEL 196
>sp|P50275|ASE1_YEAST Anaphase spindle elongation protein
Length = 885
Score = 30.8 bits (68), Expect = 5.0
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 1/154 (0%)
Frame = +2
Query: 194 PKKPRQSHSKIKVLVTVFMDYQGVVLSEFLPAGQTVNKEYYLGLMKRLRENIRRKRPELW 373
PKKP SK L T + VL FLP + K L +K L ++++ P L
Sbjct: 199 PKKPLSLLSKKAALDTA----KKFVLGSFLPRLRDYLKS--LITLKHLIQSVKENLPGLT 252
Query: 374 K-DNSWFFHHDNASSHTSHLERYFLIKNSTNVLPRAPYSPDMSLCDFFLFPRLKFHLRGK 550
+ DN S+ T++L + I+N D+ L F+ K L+G
Sbjct: 253 EADNEAIAEFPELSTLTAYLLQ---IENGKG---------DIGLSMKFIIDNRKDILKGS 300
Query: 551 RFESIEAIKEKSLRELNVISILEYQNCFQNWINR 652
F++I K + E+ I EY+ F++ + +
Sbjct: 301 AFKTINEESVKHMNEVIKIYEEEYERRFKSVLTK 334
>sp|Q27152|DPOLA_OXYTR DNA polymerase alpha catalytic subunit
Length = 1513
Score = 30.8 bits (68), Expect = 5.0
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Frame = +2
Query: 380 NSWFFHHDNASSHTSHLERYFLIKNSTNVLP--RAPYSPDMSLCDFF-LFPRLKF----H 538
N WF NA + + + K +LP +AP++ D F F LK
Sbjct: 800 NLWFRSLQNARAERNEMLLLHEFKKKKFILPDKKAPFAKDFKRNMFADEFEELKSGKGPK 859
Query: 539 LRGKRFESIEA----IKEKSLRELNVISILEYQNCFQNWINRWNLCITSKG----EYFEG 694
GKR ++ A I+ K+ N+I +L++ + + + I +NLC T+ + F+G
Sbjct: 860 KGGKRKKAAYAGGLVIEPKAGFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDG 919
Query: 695 HKIK 706
++K
Sbjct: 920 SEVK 923
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
transposase)
Length = 273
Score = 30.0 bits (66), Expect = 8.6
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 341 ENIRRKRPELWKDNSWFFHHDNASSHTS-HLERYFLIKNSTNVLPRAPYSPDMSLCDFFL 517
EN R SW F DN HTS H+ +F + N+L SPD++ + +
Sbjct: 157 ENTMRPWARANLGRSWVFQQDNDPKHTSGHVANWFR-RRRVNLLEWPSQSPDLNPIE-HM 214
Query: 518 FPRLKFHLRGKR 553
+ L+ L+G R
Sbjct: 215 WEELERRLKGVR 226
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,538,610
Number of Sequences: 369166
Number of extensions: 1973629
Number of successful extensions: 5033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5033
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)