Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O19
(403 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7WRG7|MUTS_STAAU DNA mismatch repair protein mutS >gi|6... 37 0.011
sp|Q6GHE0|MUTS_STAAR DNA mismatch repair protein mutS 35 0.042
sp|Q9PPB8|SYC_CAMJE Cysteinyl-tRNA synthetase (Cysteine--tR... 32 0.47
sp|P27986|P85A_HUMAN Phosphatidylinositol 3-kinase regulato... 32 0.61
sp|Q63787|P85A_RAT Phosphatidylinositol 3-kinase regulatory... 32 0.61
sp|P26450|P85A_MOUSE Phosphatidylinositol 3-kinase regulato... 32 0.61
sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain... 31 0.80
sp|Q5HUZ0|SYC_CAMJR Cysteinyl-tRNA synthetase (Cysteine--tR... 31 0.80
sp|Q9CNU1|GRPE_PASMU GrpE protein (HSP-70 cofactor) 31 0.80
sp|P23727|P85A_BOVIN Phosphatidylinositol 3-kinase regulato... 31 1.0
>sp|Q7WRG7|MUTS_STAAU DNA mismatch repair protein mutS
sp|Q5HGD6|MUTS_STAAC DNA mismatch repair protein mutS
sp|P65494|MUTS_STAAW DNA mismatch repair protein mutS
sp|Q6G9R8|MUTS_STAAS DNA mismatch repair protein mutS
sp|P65493|MUTS_STAAN DNA mismatch repair protein mutS
sp|Q931S8|MUTS_STAAM DNA mismatch repair protein mutS
Length = 872
Score = 37.4 bits (85), Expect = 0.011
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 111 LEEVVREYTRAYEQETRLLQAKGDIRTRAETAKLYQYTTPSFMRREALQ 257
L E V++YT +Q+ +++ +++ AE A+ Y YT PSF + L+
Sbjct: 518 LREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSFSENKTLE 566
>sp|Q6GHE0|MUTS_STAAR DNA mismatch repair protein mutS
Length = 872
Score = 35.4 bits (80), Expect = 0.042
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 111 LEEVVREYTRAYEQETRLLQAKGDIRTRAETAKLYQYTTPSFMRREALQ 257
L E V++YT + + +++ +++ AE A+ Y YT PSF + L+
Sbjct: 518 LREEVKKYTERLQHQAKIISELDCLQSFAEIAQKYNYTRPSFSENKTLE 566
>sp|Q9PPB8|SYC_CAMJE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 462
Score = 32.0 bits (71), Expect = 0.47
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 63 NIDEHFKRKLITSNEPLEEVVREYTRAYEQETRLLQA-KGDIRTRA 197
+ID+ +K+ S + LEE+ Y ++YE++ R+L D + RA
Sbjct: 65 DIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVLDPDFKPRA 110
>sp|P27986|P85A_HUMAN Phosphatidylinositol 3-kinase regulatory alpha subunit (PI3-kinase
p85-alpha subunit) (PtdIns-3-kinase p85-alpha) (PI3K)
Length = 724
Score = 31.6 bits (70), Expect = 0.61
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 42 QEKMKKENIDEHFKRKLITSNEPLEEVVREYTRAYEQETRLLQ----AKGDIRTRAETAK 209
Q+++ KE+ E +KL N +E REY R YE+ TR Q + I ET K
Sbjct: 433 QDQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIK 492
Query: 210 LYQ 218
+++
Sbjct: 493 IFE 495
>sp|Q63787|P85A_RAT Phosphatidylinositol 3-kinase regulatory alpha subunit (PI3-kinase
p85-alpha subunit) (PtdIns-3-kinase p85-alpha) (PI3K)
Length = 724
Score = 31.6 bits (70), Expect = 0.61
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 42 QEKMKKENIDEHFKRKLITSNEPLEEVVREYTRAYEQETRLLQAKGDIRTRAE----TAK 209
Q+++ KE+ E +KL N +E REY R YE+ TR Q RT E T K
Sbjct: 433 QDQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNDTIK 492
Query: 210 LYQ 218
+++
Sbjct: 493 IFE 495
>sp|P26450|P85A_MOUSE Phosphatidylinositol 3-kinase regulatory alpha subunit (PI3-kinase
p85-alpha subunit) (PtdIns-3-kinase p85-alpha) (PI3K)
Length = 724
Score = 31.6 bits (70), Expect = 0.61
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 42 QEKMKKENIDEHFKRKLITSNEPLEEVVREYTRAYEQETRLLQ----AKGDIRTRAETAK 209
Q+++ KE+ E +KL N +E REY R YE+ TR Q + I ET K
Sbjct: 433 QDQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIK 492
Query: 210 LYQ 218
+++
Sbjct: 493 IFE 495
>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain precursor (Glutamate
synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain)
Length = 1515
Score = 31.2 bits (69), Expect = 0.80
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 147 EQETRLLQAKGDIRTRAETAKLYQYTTPSFMRREALQPNTHSDLKSEVLIRTLRKPTEGL 326
E +TRLLQ + + T AE + Y + +A P +R +R+ TE
Sbjct: 573 ETQTRLLQLESPVLTTAEFRAMRDYMGDTAAEIDATFPVDGGPEALRDALRRIRQETEDA 632
Query: 327 IRGG 338
+RGG
Sbjct: 633 VRGG 636
>sp|Q5HUZ0|SYC_CAMJR Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 462
Score = 31.2 bits (69), Expect = 0.80
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 63 NIDEHFKRKLITSNEPLEEVVREYTRAYEQETRLLQA-KGDIRTRA 197
+ID+ +K+ S + LEE+ Y ++YE++ R L D + RA
Sbjct: 65 DIDDKILKKMTQSGQTLEEITEFYIKSYEEDMRALNVLDPDFKPRA 110
>sp|Q9CNU1|GRPE_PASMU GrpE protein (HSP-70 cofactor)
Length = 197
Score = 31.2 bits (69), Expect = 0.80
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 15 HLQVNDEMNQEKMKKENIDEHFKRKLITSNEPLEEVVREYTRAYEQETRLLQAKGD--IR 188
H++ +++ +EK +++ E + + + +PLEE + Q T +++ + D +R
Sbjct: 7 HIEKEEQLQEEKHEEQQKTEETEVEAVNGVDPLEEAILRVQELEAQLTEMVKKEQDFLLR 66
Query: 189 TRAE 200
+RAE
Sbjct: 67 SRAE 70
>sp|P23727|P85A_BOVIN Phosphatidylinositol 3-kinase regulatory alpha subunit (PI3-kinase
p85-alpha subunit) (PtdIns-3-kinase p85-alpha) (PI3K)
Length = 724
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 42 QEKMKKENIDEHFKRKLITSNEPLEEVVREYTRAYEQETRLLQ----AKGDIRTRAETAK 209
Q+++ KE+ E +KL N +E REY R YE TR Q + I ET K
Sbjct: 433 QDQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEDYTRTSQEIQMKRTAIEAFNETIK 492
Query: 210 LYQ 218
+++
Sbjct: 493 IFE 495
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,641,048
Number of Sequences: 369166
Number of extensions: 939703
Number of successful extensions: 3043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3036
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)