Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O12
(854 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain 31 5.0
sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-ass... 31 5.0
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain
Length = 1024
Score = 30.8 bits (68), Expect = 5.0
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 16 FYYTFL*SYKLERNENYNYTTILIVGFCKYIFCSITGVFIIKRFNHL 156
FY + L++N N+N TTIL + + C+IT I FN+L
Sbjct: 424 FYNISFNNIYLKKNINFNKTTILTINKNTFKICNITQNIIYIPFNYL 470
>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated protein homolog
Length = 3371
Score = 30.8 bits (68), Expect = 5.0
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Frame = +3
Query: 96 LQIYLLFDHRGLHHQAIQPSLPQVQHSYRQHQA--------IQAILLLVIPKLQQSYRHH 251
LQ Y L + + + +Q YR H+A +Q + + LQ +YR +
Sbjct: 1674 LQSYFRMRKMRLDYLKVCHAAVVIQRYYRAHRAGAQQRKHFLQ--VRRAVTYLQATYRGY 1731
Query: 252 KAI-----QAVLLLVIPKLQQSYRHHKAIQAVLLLVIPKLQQSYRHHKAIQAV 395
K Q+ L I + YR Q+VL + K+Q+ YR HK + A+
Sbjct: 1732 KVRRQLQQQSAAALKIQAAFRGYRQRTKYQSVLQSAL-KIQRWYRTHKTVSAI 1783
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,989,988
Number of Sequences: 369166
Number of extensions: 1432880
Number of successful extensions: 2952
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2927
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)