Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O10
(844 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P75370|P29_MYCPN Probable ABC transporter ATP-binding pr... 32 2.9
sp|P35415|MYSP1_DROME Paramyosin, long form 31 4.9
sp|P35416|MYSP2_DROME Paramyosin, short form (Miniparamyosin) 31 4.9
sp|P79385|MFGM_PIG Lactadherin (Milk fat globule-EGF factor... 30 6.4
sp|Q6BZE1|ATG20_DEBHA Autophagy-related protein 20 30 6.4
sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen) 30 8.3
>sp|P75370|P29_MYCPN Probable ABC transporter ATP-binding protein p29
Length = 244
Score = 31.6 bits (70), Expect = 2.9
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 646 WRYTSQIHKIYDK-FLVYIQDLNDQIFPWVDFSNCFETVQVIVKKYAGRVKLMLQVLQIM 822
WR K + + FLV Q L +QI ++ N E V I+K +G K ++V ++
Sbjct: 101 WREAKNNLKWWQRLFLVEPQSLREQIIQILEEVNLKEYVTYIIKDLSGGQKQRVEVAKLF 160
Query: 823 FARADI 840
FA + +
Sbjct: 161 FANSQV 166
>sp|P35415|MYSP1_DROME Paramyosin, long form
Length = 879
Score = 30.8 bits (68), Expect = 4.9
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +3
Query: 9 VSKLK*KVKEINKQLQEEKARKLERSNLSTSNGSMDLFKEISLAQEQSQPKVVDVQDYVK 188
+SKL+ +++++ +L+EEK R E + KE+ + E+ Q ++ +QD +
Sbjct: 742 ISKLEARIRDLELELEEEKRRHAE--TIKILRKKERTVKEVLVQCEEDQKNLILLQDALD 799
Query: 189 KS 194
KS
Sbjct: 800 KS 801
>sp|P35416|MYSP2_DROME Paramyosin, short form (Miniparamyosin)
Length = 640
Score = 30.8 bits (68), Expect = 4.9
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +3
Query: 9 VSKLK*KVKEINKQLQEEKARKLERSNLSTSNGSMDLFKEISLAQEQSQPKVVDVQDYVK 188
+SKL+ +++++ +L+EEK R E + KE+ + E+ Q ++ +QD +
Sbjct: 503 ISKLEARIRDLELELEEEKRRHAE--TIKILRKKERTVKEVLVQCEEDQKNLILLQDALD 560
Query: 189 KS 194
KS
Sbjct: 561 KS 562
>sp|P79385|MFGM_PIG Lactadherin (Milk fat globule-EGF factor 8) (MFG-E8) (MFGM) (Sperm
surface protein SP47) (PP47)
Length = 409
Score = 30.4 bits (67), Expect = 6.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 293 AQTDMGISNNEFFCGSAIENNILTGNITNNSDKNGLSPT 409
A +D G+S E+ A+E I GN+ NNS K + T
Sbjct: 344 AYSDDGVSWTEYRDQGALEGKIFPGNLDNNSHKKNMFET 382
>sp|Q6BZE1|ATG20_DEBHA Autophagy-related protein 20
Length = 625
Score = 30.4 bits (67), Expect = 6.4
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +2
Query: 338 SAIENNILTGNITNNSDKNGLSPTYQEIEIQTQFDIDNNLGERSPPDGAVEEIDISARKI 517
S I NN+L N N +D+NGL Y + I F++++N+ S E++ ++
Sbjct: 214 SLIPNNLLLANPVNPTDQNGL---YSLLPIVNGFELNSNIDNISSLHKLNEDLHKLNEQV 270
Query: 518 SFA*LKAEQLLHSH 559
L+ EQ H
Sbjct: 271 HVFELRKEQNERRH 284
>sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen)
Length = 504
Score = 30.0 bits (66), Expect = 8.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 298 LCIFFIIISNTLTIFTRYLINIYFWN 221
L +FFII+SNT+T+ Y+ Y+ N
Sbjct: 6 LILFFIILSNTITVIHGYVRGCYYTN 31
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,311,970
Number of Sequences: 369166
Number of extensions: 1661804
Number of successful extensions: 4791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4785
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)