Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O09
(284 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 126 1e-29
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 126 1e-29
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 126 1e-29
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 125 3e-29
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 123 1e-28
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 120 7e-28
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 120 1e-27
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 119 2e-27
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 118 5e-27
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 116 2e-26
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 126 bits (317), Expect = 1e-29
Identities = 60/68 (88%), Positives = 64/68 (94%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 256 GKKERPRA 279
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 126 bits (317), Expect = 1e-29
Identities = 60/68 (88%), Positives = 64/68 (94%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 256 GKKERPRA 279
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 126 bits (317), Expect = 1e-29
Identities = 60/68 (88%), Positives = 64/68 (94%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 256 GKKERPRA 279
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 125 bits (314), Expect = 3e-29
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+AL+K
Sbjct: 76 KNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFK 135
Query: 256 GKKERPRA 279
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 123 bits (308), Expect = 1e-28
Identities = 58/68 (85%), Positives = 63/68 (92%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+AL+K
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFK 135
Query: 256 GKKERPRA 279
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
Length = 143
Score = 120 bits (302), Expect = 7e-28
Identities = 58/68 (85%), Positives = 63/68 (92%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVPNDGCLN+IEENDEVLV+GFGRSGHAVGDIPGVRFKIVKVANVSL AL+
Sbjct: 76 KNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFT 135
Query: 256 GKKERPRA 279
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 120 bits (300), Expect = 1e-27
Identities = 57/68 (83%), Positives = 62/68 (91%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 256 GKKERPRA 279
KKERPR+
Sbjct: 136 EKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 119 bits (298), Expect = 2e-27
Identities = 57/68 (83%), Positives = 62/68 (91%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLLALYK
Sbjct: 76 KNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYK 135
Query: 256 GKKERPRA 279
KKERPR+
Sbjct: 136 QKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 118 bits (295), Expect = 5e-27
Identities = 57/68 (83%), Positives = 61/68 (89%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 256 GKKERPRA 279
KKERPR+
Sbjct: 136 EKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 116 bits (290), Expect = 2e-26
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = +1
Query: 76 KTEKKLLAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 255
K KK+ AFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 256 GKKERPRA 279
KKERPR+
Sbjct: 136 EKKERPRS 143
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 VEAKQPNSAIRKCVRVQFDQKRKK 88
VEAKQPNSAIRKCVRVQ + KK
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKK 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,382,810
Number of Sequences: 369166
Number of extensions: 503443
Number of successful extensions: 2171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2148
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)