Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O03
(784 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58454|YA54_METJA Hypothetical protein MJ1054 [Contains:... 32 2.0
sp|Q59006|AMYA_METJA Putative alpha-amylase 31 3.3
sp|P34031|GYRB_SPICI DNA gyrase subunit B 31 4.4
sp|Q8Y5T0|DPO4_LISMO DNA polymerase IV (Pol IV) 30 9.7
sp|Q71Y46|DPO4_LISMF DNA polymerase IV (Pol IV) 30 9.7
>sp|Q58454|YA54_METJA Hypothetical protein MJ1054 [Contains: Mja UDPGD intein]
Length = 895
Score = 32.0 bits (71), Expect = 2.0
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 176 FLPSSDNIREPDSLSMISDYSEMGLQIKQSIKFSDMIMSTYADLKKESEVTIIRYQFTYG 355
F P++D++RE ++ +I E G +K Y + +E+ + + + + G
Sbjct: 774 FKPNTDDLRESRAIKLIDMLLESGAIVKGF---------DYVEKARENTINMYKLDKSKG 824
Query: 356 FYGWNL 373
FYG+NL
Sbjct: 825 FYGYNL 830
>sp|Q59006|AMYA_METJA Putative alpha-amylase
Length = 467
Score = 31.2 bits (69), Expect = 3.3
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 176 FLPSSDNIREP-DSLSMISDYSEMGLQIKQSIKFSDMIMSTYADLKKESEVTII 334
++P+++ I E D +YS G+ ++Q+++F+D ++ + DL K V +I
Sbjct: 48 YIPTNELILELIDEYDFKVNYSITGVFVEQALEFNDYVLDLFKDLVKTGNVELI 101
>sp|P34031|GYRB_SPICI DNA gyrase subunit B
Length = 640
Score = 30.8 bits (68), Expect = 4.4
Identities = 29/117 (24%), Positives = 48/117 (41%)
Frame = +2
Query: 41 KYRLRNMIKNSEKFGNNSKESMNNLDYFICDKNGNDQEQFGCDMDFLPSSDNIREPDSLS 220
KY + KN++K+ E N K + G + FLP +E +
Sbjct: 127 KYLKVEVRKNNKKY---VMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKE----T 179
Query: 221 MISDYSEMGLQIKQSIKFSDMIMSTYADLKKESEVTIIRYQFTYGFYGWNLCSRKLI 391
I +S + +IKQ + + + + DL++E E + YQF G + L K I
Sbjct: 180 TIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTI 236
>sp|Q8Y5T0|DPO4_LISMO DNA polymerase IV (Pol IV)
Length = 356
Score = 29.6 bits (65), Expect = 9.7
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 152 EQFGCDMDFLPSSDNIREPDSLSMISD------YSEMGLQIKQSIKFSDMIMSTYADLKK 313
E D +L ++N + S +M++ Y E+GL + F+ I +D KK
Sbjct: 101 EPLSLDEAYLDVTENKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKK 160
Query: 314 ESEVTII 334
+ +T++
Sbjct: 161 PAGITVV 167
>sp|Q71Y46|DPO4_LISMF DNA polymerase IV (Pol IV)
Length = 356
Score = 29.6 bits (65), Expect = 9.7
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 152 EQFGCDMDFLPSSDNIREPDSLSMISD------YSEMGLQIKQSIKFSDMIMSTYADLKK 313
E D +L ++N + S +M++ Y E+GL + F+ I +D KK
Sbjct: 101 EPLSLDEAYLDVTENKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKK 160
Query: 314 ESEVTII 334
+ +T++
Sbjct: 161 PAGITVV 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,239,744
Number of Sequences: 369166
Number of extensions: 1335296
Number of successful extensions: 3412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3412
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)