Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_N24
(449 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8YNW0|RS18_ANASP 30S ribosomal protein S18 43 4e-04
sp|Q9NVS2|RT18A_HUMAN 28S ribosomal protein S18a, mitochond... 42 5e-04
sp|Q74M26|RS18_LACJO 30S ribosomal protein S18 42 6e-04
sp|Q99N85|RT18A_MOUSE 28S ribosomal protein S18a, mitochond... 42 6e-04
sp|Q7TUA0|RS18_PROMP 30S ribosomal protein S18 41 0.001
sp|P24286|RS18_CHLMU 30S ribosomal protein S18 40 0.002
sp|P49505|RR18_ODOSI Chloroplast 30S ribosomal protein S18 40 0.002
sp|Q6MUK6|RS18_MYCMS 30S ribosomal protein S18 40 0.002
sp|Q8DH98|RS18_SYNEL 30S ribosomal protein S18 40 0.002
sp|Q839Y8|RS18_ENTFA 30S ribosomal protein S18 40 0.002
>sp|Q8YNW0|RS18_ANASP 30S ribosomal protein S18
Length = 71
Score = 42.7 bits (99), Expect = 4e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +3
Query: 120 LDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
+DY DV +LR+F+ + G ILP T LT Q ++ L + RS+ LLP
Sbjct: 17 IDYKDVDLLRKFITERGKILPRRITGLTAKQQRELTLAIKRSRLVALLP 65
>sp|Q9NVS2|RT18A_HUMAN 28S ribosomal protein S18a, mitochondrial precursor (MRP-S18-a)
(Mrps18a) (MRP-S18-3)
Length = 196
Score = 42.4 bits (98), Expect = 5e-04
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +3
Query: 117 KLDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
K +Y DVL+L QF+ G +LP T L + KIE V + RAGLLP
Sbjct: 80 KYNYDDVLLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLP 129
>sp|Q74M26|RS18_LACJO 30S ribosomal protein S18
Length = 78
Score = 42.0 bits (97), Expect = 6e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 120 LDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
+DY DV +L++F+ + G ILP T + NQ K+ + + R++ GLLP
Sbjct: 25 IDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKLTVAIKRARVMGLLP 73
>sp|Q99N85|RT18A_MOUSE 28S ribosomal protein S18a, mitochondrial precursor (MRP-S18-a)
(Mrps18a) (MRP-S18-3)
Length = 196
Score = 42.0 bits (97), Expect = 6e-04
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +3
Query: 117 KLDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
K Y DVL+L QF+ G +LP T L + KIE V + RAGLLP
Sbjct: 80 KYTYEDVLLLSQFIRPYGGMLPRRVTGLCREEHRKIEECVKMAHRAGLLP 129
>sp|Q7TUA0|RS18_PROMP 30S ribosomal protein S18
Length = 73
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Frame = +3
Query: 102 NKIYKK----------LDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKR 251
N I+KK +DY DV +L++F+ + G ILP T LT Q + L V R++
Sbjct: 3 NSIFKKQLSPIKPGDPIDYKDVELLKKFITERGKILPRRMTGLTSKQQRDLTLAVKRARI 62
Query: 252 AGLLP 266
LLP
Sbjct: 63 VALLP 67
>sp|P24286|RS18_CHLMU 30S ribosomal protein S18
Length = 81
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +3
Query: 111 YKKLDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
+K +DY DV+ L++F+ + G ILP T ++ Q + V R++ GLLP
Sbjct: 25 WKTIDYKDVVTLKRFITERGKILPRRITGVSSRFQALLAQAVKRARHVGLLP 76
>sp|P49505|RR18_ODOSI Chloroplast 30S ribosomal protein S18
Length = 72
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +3
Query: 108 IYKKLDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
+ +K+DY D+ +L+ F+ + G ILP AT +T Q +I + R++ LLP
Sbjct: 13 VNQKIDYKDIDLLKLFITEQGKILPRRATGVTVQQQRQIAKAIKRARVLSLLP 65
>sp|Q6MUK6|RS18_MYCMS 30S ribosomal protein S18
Length = 75
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/71 (29%), Positives = 39/71 (54%)
Frame = +3
Query: 54 LKDENKCLFSDINDLLNKIYKKLDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELL 233
+K K F N++ K +DY D+ +L++F+ +G ILP T + +Q ++ L
Sbjct: 6 IKKRKKVNFFQKNNI-----KYIDYKDIELLKKFISPNGQILPRRITGTSPKDQRQLALA 60
Query: 234 VDRSKRAGLLP 266
+ R+++ LLP
Sbjct: 61 IKRARQMALLP 71
>sp|Q8DH98|RS18_SYNEL 30S ribosomal protein S18
Length = 71
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 120 LDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
+DY DV +LR+F+ + G ILP T LT Q ++ + + R++ LLP
Sbjct: 17 IDYKDVDLLRRFITERGKILPRRVTGLTAKQQRQLAVAIKRARIMALLP 65
>sp|Q839Y8|RS18_ENTFA 30S ribosomal protein S18
Length = 79
Score = 40.0 bits (92), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 120 LDYTDVLILRQFLDKSGNILPINATQLTKGNQLKIELLVDRSKRAGLLP 266
+DY D +L++F+ + G ILP T NQ K+ + + R++ GLLP
Sbjct: 25 IDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLTIAIKRARIMGLLP 73
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,237,821
Number of Sequences: 369166
Number of extensions: 831003
Number of successful extensions: 2471
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)