Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_N22-1
(376 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38781|RSC30_YEAST Chromatin structure remodeling comple... 29 3.8
sp|Q14738|2A5D_HUMAN Serine/threonine protein phosphatase 2... 28 5.0
sp|P32030|SLP1_DROME Fork head domain transcription factor ... 28 5.0
sp|Q28653|2A5D_RABIT Serine/threonine protein phosphatase 2... 28 5.0
sp|P42918|CRTC2_BOVIN Calreticulin, brain isoform 2 precurs... 28 8.5
>sp|P38781|RSC30_YEAST Chromatin structure remodeling complex protein RSC30 (Remodel the
structure of chromatin complex subunit RSC30)
Length = 883
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +2
Query: 41 HYFHQNFLCLHHHIQFQFYRFLYNLPHKNL-----PNHILHQ 151
+ F +NF+ H F+FY L+++ H N PN+ HQ
Sbjct: 304 YLFTKNFIIFRDHYLFKFYNILHDICHINQFKVSPPNNKNHQ 345
>sp|Q14738|2A5D_HUMAN Serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit,
delta isoform (PP2A, B subunit, B' delta isoform) (PP2A,
B subunit, B56 delta isoform) (PP2A, B subunit, PR61
delta isoform) (PP2A, B subunit, R5 delta isoform)
Length = 602
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 23 FSANIIHYFHQNFLCLHHHIQFQ----FYRFLYNLPHKN 127
F I+H + FL L +I+ Q FYRF+Y H N
Sbjct: 257 FLKTILHRIYGKFLGLRAYIRRQINHIFYRFIYETEHHN 295
>sp|P32030|SLP1_DROME Fork head domain transcription factor slp1 (Sloppy paired locus
protein 1)
Length = 322
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 101 NDKIGIEYDDEDKESFDENNE 39
NDK+ +E+DDE ++ DE+ E
Sbjct: 80 NDKLDVEFDDELEDQLDEDQE 100
>sp|Q28653|2A5D_RABIT Serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit,
delta isoform (PP2A, B subunit, B' delta isoform) (PP2A,
B subunit, B56 delta isoform) (PP2A, B subunit, PR61
delta isoform) (PP2A, B subunit, R5 delta isoform)
(PP2A, B subunit, B'-gamma)
Length = 586
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 23 FSANIIHYFHQNFLCLHHHIQFQ----FYRFLYNLPHKN 127
F I+H + FL L +I+ Q FYRF+Y H N
Sbjct: 241 FLKTILHRIYGKFLGLRAYIRRQINHIFYRFIYETEHHN 279
>sp|P42918|CRTC2_BOVIN Calreticulin, brain isoform 2 precursor (CRP55) (Calregulin)
(HACBP)
Length = 421
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 2 NHFILILFSANIIHYFHQNFLCLHHHIQF 88
NHF+L L + ++ + ++CLHH + F
Sbjct: 4 NHFLLSLVLSIVLLFHFVFYICLHHIVTF 32
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,119,237
Number of Sequences: 369166
Number of extensions: 193066
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)