Planarian EST Database


Dr_sW_008_N14

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_008_N14
         (797 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13573|SNW1_HUMAN  Nuclear protein SkiP (Ski-interacting ...   204   3e-52
sp|Q9CSN1|SNW1_MOUSE  Nuclear protein SkiP (Ski-interacting ...   203   5e-52
sp|P39736|BX42_DROME  Puff-specific protein Bx42                  186   8e-47
sp|Q22836|YGH1_CAEEL  Hypothetical protein T27F2.1 in chromo...   154   2e-37
sp|Q09882|PRP45_SCHPO  Pre-mRNA splicing factor prp45 (Compl...   143   6e-34
sp|Q759B6|PRP45_ASHGO  Pre-mRNA splicing factor PRP45 (Pre-m...   112   1e-24
sp|P54705|SNWA_DICDI  Protein snwA                                 94   3e-19
sp|P28004|PRP45_YEAST  Pre-mRNA splicing factor PRP45 (Pre-m...    80   5e-15
sp|Q8SX83|SPEN_DROME  Split ends protein                           43   0.001
sp|P53278|YG3A_YEAST  Hypothetical 92.7 kDa protein in ASN2-...    42   0.001
>sp|Q13573|SNW1_HUMAN Nuclear protein SkiP (Ski-interacting protein) (SNW1 protein)
           (Nuclear receptor coactivator NCoA-62)
          Length = 536

 Score =  204 bits (518), Expect = 3e-52
 Identities = 108/242 (44%), Positives = 159/242 (65%), Gaps = 9/242 (3%)
 Frame = +1

Query: 1   RPPTKREKAMWKIPPCVSNWKNPRGYTVPLANRVAADGRNNQVTGSNEKINSFSEALFIA 180
           R  T +E+  WKIPPC+SNWKN +GYT+PL  R+AADGR  Q    NE     +EAL+IA
Sbjct: 235 RKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIA 294

Query: 181 ERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQ---NMATEEDSLEAKERDE 351
           +RK+RE +  R  + +K+ QKEK+K++ KLR+ A K RE++       E++  EA+ERDE
Sbjct: 295 DRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDE 354

Query: 352 IRHDRQRIRNRERNMNKAGPEVRRKVL--EDRDISEQIALGQANPLLNRLKDDNVYDRRL 525
           IRHDR++ R  +RN+++A P+ R K+   E+RDISE IALG  NP   R  ++  YD+RL
Sbjct: 355 IRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNP---RTSNEVQYDQRL 411

Query: 526 MDKTGGLDSGFLAGEDEMYNIYDKPL---FNQNKSVYKAPRHTDSSAL-EDIETYQKGKK 693
            +++ G+DSGF  GEDE+YN+YD+      +  +S+Y+  ++ D     +D+E   K  +
Sbjct: 412 FNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNR 471

Query: 694 FV 699
           FV
Sbjct: 472 FV 473
>sp|Q9CSN1|SNW1_MOUSE Nuclear protein SkiP (Ski-interacting protein) (SNW1 protein)
          Length = 536

 Score =  203 bits (516), Expect = 5e-52
 Identities = 107/242 (44%), Positives = 159/242 (65%), Gaps = 9/242 (3%)
 Frame = +1

Query: 1   RPPTKREKAMWKIPPCVSNWKNPRGYTVPLANRVAADGRNNQVTGSNEKINSFSEALFIA 180
           R  T +E+  WKIPPC+SNWKN +GYT+P+  R+AADGR  Q    NE     +EAL+IA
Sbjct: 235 RKMTVKEQQEWKIPPCISNWKNAKGYTIPIDKRLAADGRGLQTVHINENFAKLAEALYIA 294

Query: 181 ERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQ---NMATEEDSLEAKERDE 351
           +RK+RE +  R  + +K+ QKEK+K++ KLR+ A K RE++       E++  EA+ERDE
Sbjct: 295 DRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDE 354

Query: 352 IRHDRQRIRNRERNMNKAGPEVRRKVL--EDRDISEQIALGQANPLLNRLKDDNVYDRRL 525
           IRHDR++ R  +RN+++A P+ R K+   E+RDISE IALG  NP   R  ++  YD+RL
Sbjct: 355 IRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNP---RTSNEVQYDQRL 411

Query: 526 MDKTGGLDSGFLAGEDEMYNIYDKPL---FNQNKSVYKAPRHTDSSAL-EDIETYQKGKK 693
            +++ G+DSGF  GEDE+YN+YD+      +  +S+Y+  ++ D     +D+E   K  +
Sbjct: 412 FNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNR 471

Query: 694 FV 699
           FV
Sbjct: 472 FV 473
>sp|P39736|BX42_DROME Puff-specific protein Bx42
          Length = 547

 Score =  186 bits (471), Expect = 8e-47
 Identities = 107/249 (42%), Positives = 153/249 (61%), Gaps = 16/249 (6%)
 Frame = +1

Query: 1   RPPTKREKAMWKIPPCVSNWKNPRGYTVPLANRVAADGRNNQVTGSNEKINSFSEALFIA 180
           R  T +E+  WKIPPC+SNWKN +GYT+PL  R+AADGR  Q    NEK    +EAL+IA
Sbjct: 238 RKVTVKEQKEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQQVHINEKFAKMAEALYIA 297

Query: 181 ERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREK----QNMATEEDS------L 330
           +RK+RE +  R+ L +KL QKEK+K +  LR  A + RE+    +N    E S       
Sbjct: 298 DRKAREAVEARSQLEKKLAQKEKEKKEDMLRMMAQRAREERAGLRNPEAAEPSGSGATGS 357

Query: 331 EAKERDEIRHDRQRIRNRERNMNKAGPEVRRKVLE--DRDISEQIALGQANPLLNRLKDD 504
           E +ER+++R +RQR R R+RN+ +A PE R K+ +  +RDISEQIALG   P  +    +
Sbjct: 358 EVRERNDLRAERQRERQRDRNLQRAAPEKRSKLQKERERDISEQIALGL--PAKSAGNGE 415

Query: 505 NVYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPLFNQN---KSVYKAPRHTDSSAL-EDIE 672
            ++D+RL + T G+DSG+  G+DE YN+YDKP  + N     +Y+  +  DS     D++
Sbjct: 416 TLFDQRLFNTTKGMDSGY--GDDEAYNVYDKPWRDSNTLGAHIYRPSKQADSDNYGGDLD 473

Query: 673 TYQKGKKFV 699
                K+FV
Sbjct: 474 AIVNTKRFV 482
>sp|Q22836|YGH1_CAEEL Hypothetical protein T27F2.1 in chromosome V
          Length = 535

 Score =  154 bits (390), Expect = 2e-37
 Identities = 86/203 (42%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
 Frame = +1

Query: 1   RPPTKREKAMWKIPPCVSNWKNPRGYTVPLANRVAADGRNNQVTGSNEKINSFSEALFIA 180
           R  T +++  WKIPPC+SNWKNP+G+TV L  R+AADGR  Q T  NE     ++AL+IA
Sbjct: 238 RKMTAKDQNDWKIPPCISNWKNPKGFTVGLDKRLAADGRGLQQTHINENFAKLADALYIA 297

Query: 181 ERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQN---MATEEDSLEAKERDE 351
           +RK+REE+  R  L +++ Q +K + +AK+ + A K R++++      +ED  + K R+E
Sbjct: 298 DRKAREEVETRAQLERRVAQNKKSEQEAKMAEAAAKARQERSAMRRKDDEDDEQVKVREE 357

Query: 352 IRHDRQRIRNRERNMNKAGPEVRRKVLE--DRDISEQIALGQANPLLNRLKDDNVYDRRL 525
           IR DR     +ERN+ ++ P+   K+ +  +RDISE+I LG  +    R  +   +D+RL
Sbjct: 358 IRRDRLDDIRKERNIARSRPDKADKLRKERERDISEKIVLGLPDTNQKRTGEPQ-FDQRL 416

Query: 526 MDKTGGLDSGFLAGEDEMYNIYD 594
            DKT GLDSG  A +D+ YN YD
Sbjct: 417 FDKTQGLDSG--AMDDDTYNPYD 437
>sp|Q09882|PRP45_SCHPO Pre-mRNA splicing factor prp45 (Complexed with cdc5 protein 13) (Cell
            cycle control protein cwf13) (Transcriptional coregulator
            snw1)
          Length = 557

 Score =  143 bits (360), Expect = 6e-34
 Identities = 91/267 (34%), Positives = 137/267 (51%), Gaps = 49/267 (18%)
 Frame = +1

Query: 4    PPTK---REKAMWKIPPCVSNWKNPRGYTVPLANRVAADGRNNQVTGSNEKINSFSEALF 174
            PP K   +E+  W+IPP +SNWKNP+GYT+PL  R+AADGR       N+    FSEAL+
Sbjct: 237  PPRKVSAQEQQDWQIPPSISNWKNPKGYTIPLDKRLAADGRGLNDVEINDGFAKFSEALY 296

Query: 175  IAERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREK---QNMAT---------- 315
              ER++REE+  R ++RQK+ +KEK + + +L   A K RE    +N A+          
Sbjct: 297  TVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKAREDRMGRNAASSGPSHAKPRS 356

Query: 316  -------------------------EEDSLEAKERDEIRHDRQRIRNRERNMNKAGPEVR 420
                                     +EDS   + R E+R +R+R   ++  +++ G E R
Sbjct: 357  TSVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLRLSRMGAEKR 416

Query: 421  RKVLE---DRDISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSGFLAGEDEMYNIY 591
             K+ E    RD++E++ALG + P    +  D + D RL ++  GL SGF   +++ YN+Y
Sbjct: 417  AKLAEKDRPRDVAERVALGLSKP---SMSSDTMIDSRLFNQASGLGSGF--QDEDSYNVY 471

Query: 592  DKPLFNQNKSVYKAP-----RHTDSSA 657
            DKP      S    P     R  D+SA
Sbjct: 472  DKPWRAAPSSTLYRPGATLSRQVDASA 498
>sp|Q759B6|PRP45_ASHGO Pre-mRNA splicing factor PRP45 (Pre-mRNA processing protein 45)
          Length = 443

 Score =  112 bits (280), Expect = 1e-24
 Identities = 84/247 (34%), Positives = 130/247 (52%), Gaps = 18/247 (7%)
 Frame = +1

Query: 10  TKREKAMWKIPPCVSNWKNPRGYTVPLANRVAADGRNNQ----VTGSNEKINSFSEALFI 177
           TK ++  W+IP  VSNWKNP GY + L  R+A DGR N+    +   NEK+   + AL  
Sbjct: 172 TKEQREQWRIPSAVSNWKNPNGYAIDLEKRIAIDGRYNREGTAIPAVNEKLLELTNALEE 231

Query: 178 AERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQNMATEEDSLEAKERDEIR 357
           AE K+REE+  R   R++  +++    + KLR+ A + RE++     +  ++ +E DE  
Sbjct: 232 AESKAREEVRNRAEARKQEAEQQVRLKEDKLRELAQRSREERQRKRRQ-PIDHEEYDESA 290

Query: 358 HDRQRIRNRERN-------MNKAGPEVRRKVL---EDRDISEQIALGQANPLLNRLKDDN 507
             RQ  RN +R+       ++K     R +VL   + RD+SE+I LG A P  + + D +
Sbjct: 291 IIRQTERNEKRDQMKNDMRLSKLSTADRLRVLAHAQGRDVSEKIILGAAKP--SEVPDVH 348

Query: 508 VYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPLFNQN--KSVYKAPRHT--DSSALEDIET 675
            YD RL+ K  G     + G  E   +YD PLF QN    +YK  R T  ++ AL+ +  
Sbjct: 349 -YDSRLLTKGAGT---AVPGAPE--QVYDGPLFAQNAMDRLYKPARFTGPENDALDILSK 402

Query: 676 YQKGKKF 696
               ++F
Sbjct: 403 MTSEQRF 409
>sp|P54705|SNWA_DICDI Protein snwA
          Length = 685

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 47/132 (35%), Positives = 77/132 (58%)
 Frame = +1

Query: 31  WKIPPCVSNWKNPRGYTVPLANRVAADGRNNQVTGSNEKINSFSEALFIAERKSREEISQ 210
           W IPPCVSNWKNP+G+ + +  R+ ++G   Q    N+K   F++AL+IAE  +REE+S 
Sbjct: 265 WTIPPCVSNWKNPKGFAISIDKRLVSNGGGLQDVEINDKFAHFTQALYIAESNAREEVSA 324

Query: 211 RNLLRQKLNQKEKDKNDAKLRQYALKVREKQNMATEEDSLEAKERDEIRHDRQRIRNRER 390
           R  L +KL QKEK++    LR+ A  VR +++   ++     K+  +  +D     + + 
Sbjct: 325 RAELERKLAQKEKERKQDMLRKLAEDVRNERSGIIQQ-RYTRKDNSDSDNDNDNDSSSDE 383

Query: 391 NMNKAGPEVRRK 426
           + NK  P + R+
Sbjct: 384 DKNKRTPPMNRR 395

 Score = 83.2 bits (204), Expect = 8e-16
 Identities = 54/177 (30%), Positives = 98/177 (55%), Gaps = 15/177 (8%)
 Frame = +1

Query: 184 RKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQNMATEEDSLEAK-------- 339
           R SR+    R+    + N+  + ++D+  R    K R   +  ++ DS +++        
Sbjct: 455 RDSRDNRDSRDSRDNRDNRDNRRRDDSNDRDRYSKRRSDSDSDSDSDSSDSEDERVRRER 514

Query: 340 ----ERDEIRHDRQRIRNRERNMNKAGPEVRRKVLEDRDISEQIALGQANPLLNRLKDDN 507
               ERD+IR +++R   RE  +  +G + +    +DRDISE+IALGQA+    +  +D+
Sbjct: 515 KEKLERDKIRMEKKRELEREYRLEASGKKSKFNRDQDRDISEKIALGQAS---IKRTEDS 571

Query: 508 VYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPLFN--QNKSVYK-APRHTDSSALEDI 669
           +YD+RL +++  L SGF  G D+ YN+Y KPLF    + S+Y+      D+++++D+
Sbjct: 572 IYDQRLFNQSESLTSGF--GNDDSYNVYSKPLFGGAVSNSIYRPKSNQEDNTSIQDV 626
>sp|P28004|PRP45_YEAST Pre-mRNA splicing factor PRP45 (Pre-mRNA processing protein 45)
          Length = 379

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 68/207 (32%), Positives = 98/207 (47%), Gaps = 7/207 (3%)
 Frame = +1

Query: 31  WKIPPCVSNWKNPRGYTVPLANRV--AADGRNNQVTGSNEKINSFSEALFIAERKSREEI 204
           WKIP  VSNWKNP GYTV L  RV  A D  NN +   N+     SEAL  A++K+R+EI
Sbjct: 163 WKIPAAVSNWKNPNGYTVALERRVGKALDNENNTI---NDGFMKLSEALENADKKARQEI 219

Query: 205 SQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQNMATEEDSLEAKERDEIRHDRQRIRNR 384
             +  L++   ++E    ++KL++  L  R + +  T +     K +             
Sbjct: 220 RSKMELKRLAMEQEMLAKESKLKE--LSQRARYHNGTPQTGAIVKPK------------- 264

Query: 385 ERNMNKAGPEVRRKVL---EDRDISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSG 555
                +     R K L   + RD+SE+I LG A       + D  YD R    T G ++ 
Sbjct: 265 ----KQTSTVARLKELAYSQGRDVSEKIILGAAK---RSEQPDLQYDSRFF--TRGANAS 315

Query: 556 FLAGEDEMYNIYDKPLFNQN--KSVYK 630
               ED+   +YD PLF Q   +S+YK
Sbjct: 316 AKRHEDQ---VYDNPLFVQQDIESIYK 339
>sp|Q8SX83|SPEN_DROME Split ends protein
          Length = 5560

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
 Frame = +1

Query: 181  ERKSREEISQRNLLRQ--------KLNQKEKDKNDAKLRQYALKVREKQNMATEEDSLEA 336
            E+K R+E  +++L +Q        K  Q+E++K D K ++   K RE++  A E+   + 
Sbjct: 1926 EKKERQEKREKDLRKQVEREEKDRKAQQEEREKEDRKAKEEE-KEREREKKAQEDREKKE 1984

Query: 337  KERDEIRHDRQR--------IRNRE-RNMNKAGPEVRRKVLEDRDISEQ 456
            +E  E+R   QR        IR ++ R   +   + R K L D+D+ E+
Sbjct: 1985 REERELREKEQRDKEQKEKEIREKDLREKEQRERDNREKELRDKDLREK 2033

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
 Frame = +1

Query: 181  ERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQNMATEEDSLEAKERDEIRH 360
            +RK++EE  +R   R+K  Q++++K + + R+    +REK+    E+   E +E+D +R 
Sbjct: 1960 DRKAKEEEKERE--REKKAQEDREKKEREERE----LREKEQRDKEQKEKEIREKD-LRE 2012

Query: 361  DRQRIR-NRERNMNKAGPEVRRKVLEDRDISEQIALGQANPLLNRLKDDNVYDRR 522
              QR R NRE+       E+R K L ++++ E+    Q    L+R KD    + R
Sbjct: 2013 KEQRERDNREK-------ELRDKDLREKEMREK---EQREKELHREKDQREREHR 2057

 Score = 37.0 bits (84), Expect = 0.062
 Identities = 28/124 (22%), Positives = 55/124 (44%)
 Frame = +1

Query: 181  ERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQNMATEEDSLEAKERDEIRH 360
            E+K REE   R   ++   QKEK+  +  LR+   + R+ +     +  L  KE  E + 
Sbjct: 1981 EKKEREERELREKEQRDKEQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMRE-KE 2039

Query: 361  DRQRIRNRERNMNKAGPEVRRKVLEDRDISEQIALGQANPLLNRLKDDNVYDRRLMDKTG 540
             R++  +RE++  +     + +     D+ ++   G       R+++ + Y +  MD  G
Sbjct: 2040 QREKELHREKDQREREHREKEQSRRAMDVEQEGRGG-------RMRELSSYQKSKMDIAG 2092

Query: 541  GLDS 552
               S
Sbjct: 2093 EASS 2096

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 24/121 (19%), Positives = 58/121 (47%)
 Frame = +1

Query: 94   NRVAADGRNNQVTGSNEKINSFSEALFIAERKSREEISQRNLLRQKLNQKEKDKNDAKLR 273
            N  ++D R N  T  + K  +       +E     + +++N   +K  ++ ++K +  LR
Sbjct: 1880 NASSSDKRKNSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLR 1939

Query: 274  QYALKVREKQNMATEEDSLEAKERDEIRHDRQRIRNRERNMNKAGPEVRRKVLEDRDISE 453
            +     RE+++   +++  E ++R     +++R R +     KA  +  +K  E+R++ E
Sbjct: 1940 KQV--EREEKDRKAQQEEREKEDRKAKEEEKEREREK-----KAQEDREKKEREERELRE 1992

Query: 454  Q 456
            +
Sbjct: 1993 K 1993
>sp|P53278|YG3A_YEAST Hypothetical 92.7 kDa protein in ASN2-PHB1 intergenic region
          Length = 816

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
 Frame = +1

Query: 7   PTKREK----AMWKIPPCVSNWKNPRGYTVPLANRVAADGRNNQVTGSNEKINSFSEALF 174
           P+++E+    A+WK P   S  K+    T   +N VA    N ++    ++    S+A++
Sbjct: 367 PSRKERTGIFALWKSPTSSSTQKSK---TAAPSNPVATP-ENPELIVKTKEHGYLSKAVY 422

Query: 175 IAERKSREEISQRNLLRQKLNQKEKDKNDAKLRQYALKVREKQNMATE-EDSLEA---KE 342
             +    E+I Q  L    L  KEKDK DAK ++Y  K+++ QN   E E+S++A   + 
Sbjct: 423 -DKINYDEKIHQAWLA--DLRAKEKDKYDAKNKEYKEKLQDLQNQIDEIENSMKAMREET 479

Query: 343 RDEIRHDRQRIRNRERNMNKAGPEVRRKVLEDRDISEQIALGQANPLLNR 492
            ++I   + R+  +  ++N      +  +L+D +  +   L + N +L++
Sbjct: 480 SEKIEVSKNRLVKKIIDVNAEHNNKKLMILKDTENMKNQKLQEKNEVLDK 529

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
 Frame = +1

Query: 181 ERKSREEISQRNLLRQKLNQKEKDKNDAKL--RQYALKVREKQN---------MATEEDS 327
           ERK +EE    NLL ++  + E+  + A+L   Q   +V++  N         +ATEE  
Sbjct: 678 ERKRKEE----NLLEKQRQELEEQAHQAQLDHEQQITQVKQTYNDQLTELQDKLATEEKE 733

Query: 328 LEAKERDEIRHDRQRIRNRERNMNKAGPEVRRKVL 432
           LEA +R+  R   ++    +     A   +++++L
Sbjct: 734 LEAVKRERTRLQAEKAIEEQTRQKNADEALKQEIL 768
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,284,040
Number of Sequences: 369166
Number of extensions: 1485591
Number of successful extensions: 6537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6214
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)