Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_N06
(752 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 ... 139 6e-33
sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 ... 135 1e-31
sp|Q4PE27|PFA4_USTMA Palmitoyltransferase PFA4 (Protein fat... 41 0.004
sp|Q5KLN1|PFA4_CRYNE Palmitoyltransferase PFA4 (Protein fat... 37 0.057
sp|Q6C7Q0|PFA4_YARLI Palmitoyltransferase PFA4 (Protein fat... 34 0.48
sp|P24037|C552_PSEST Cytochrome c-552 precursor 32 1.4
sp|Q15303|ERBB4_HUMAN Receptor tyrosine-protein kinase erbB... 32 2.4
sp|P29768|NANH_SALTY Sialidase (Neuraminidase) (NANase) (N-... 31 3.1
sp|Q9W705|NCOA2_XENLA Nuclear receptor coactivator 2 (NCoA-... 30 9.1
sp|P32639|BRR2_YEAST Pre-mRNA splicing helicase BRR2 (Prote... 30 9.1
>sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (H4 homolog)
Length = 413
Score = 139 bits (351), Expect = 6e-33
Identities = 74/203 (36%), Positives = 115/203 (56%), Gaps = 1/203 (0%)
Frame = +2
Query: 11 RGETGVESWIKEKSQLRIQENNNSNERFVYPYDLG-RIRNMKEILTWSGRCRGDGITWTV 187
R +T +ESWI+EK++ RIQ +E F++PYD+G + +N K++ TWSG GDG+ W +
Sbjct: 233 RNKTSIESWIEEKAKDRIQYYQ-LDEVFIFPYDMGSKWKNFKQVFTWSGVPEGDGLEWPI 291
Query: 188 KDGCGQYDLTIEQIKQKRDKVLHSQNYEIRRSYNGGLFPVISFGCRVVYGSPCTDENRLP 367
++GC QY LTIEQ+KQK DK + S Y++ YNG P ++ G R + SPCT+E R+
Sbjct: 292 REGCDQYSLTIEQLKQKADKRVRSVRYKVIEDYNGACCP-LNRGVRTFFTSPCTEEPRIR 350
Query: 368 VKPGQIVMVTRWRKHWLYGQILXXXXXXXXXXXXXXXXVESSQQRRVATKRANSRGWFPA 547
++ G+ ++ TR ++WLYG + +E + + RGWFP
Sbjct: 351 LQKGEFILATRGLRYWLYGDKI-----------LDDSFIEGT---------SRVRGWFPR 390
Query: 548 VCARQKYLGGEDGPAVPQKADRN 616
C + G+ PA P+ +N
Sbjct: 391 NCVEKCPCDGDSDPA-PEGEKKN 412
>sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (Zinc finger
protein 376) (Transmembrane protein H4)
sp|Q5REH2|ZDHC6_PONPY Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6)
Length = 413
Score = 135 bits (340), Expect = 1e-31
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 1/185 (0%)
Frame = +2
Query: 11 RGETGVESWIKEKSQLRIQENNNSNERFVYPYDLG-RIRNMKEILTWSGRCRGDGITWTV 187
R +T +ESWI+EK++ RIQ +E FV+PYD+G R RN K++ TWSG GDG+ W V
Sbjct: 233 RNKTSIESWIEEKAKDRIQYYQ-LDEVFVFPYDMGSRWRNFKQVFTWSGVPEGDGLEWPV 291
Query: 188 KDGCGQYDLTIEQIKQKRDKVLHSQNYEIRRSYNGGLFPVISFGCRVVYGSPCTDENRLP 367
++GC QY LTIEQ+KQK DK + S Y++ Y+G P ++ G + + SPCT+E R+
Sbjct: 292 REGCHQYSLTIEQLKQKADKRVRSVRYKVIEDYSGACCP-LNKGIKTFFTSPCTEEPRIQ 350
Query: 368 VKPGQIVMVTRWRKHWLYGQILXXXXXXXXXXXXXXXXVESSQQRRVATKRANSRGWFPA 547
++ G+ ++ TR ++WLYG + ++ S V + RGWFP
Sbjct: 351 LQKGEFILATRGLRYWLYGDKI----------------LDDSFIEGV----SRIRGWFPR 390
Query: 548 VCARQ 562
C +
Sbjct: 391 KCVEK 395
>sp|Q4PE27|PFA4_USTMA Palmitoyltransferase PFA4 (Protein fatty acyltransferase 4)
Length = 604
Score = 40.8 bits (94), Expect = 0.004
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Frame = +2
Query: 8 ARGETGVESWIKEKSQLRIQENNNSNERFVYPYDLGRIRNMKEI-----LTW-----SGR 157
A +T +ESW K+++ I+ + YPYDLG RN++++ L W R
Sbjct: 295 AVNQTTIESWEKDRTATMIRRGRVRKVK--YPYDLGLWRNVRQVLGASPLVWCLPGAGAR 352
Query: 158 CRGDGITWTVKDGCGQ 205
GDG+ + V +G G+
Sbjct: 353 MAGDGLKYPVANGLGK 368
>sp|Q5KLN1|PFA4_CRYNE Palmitoyltransferase PFA4 (Protein fatty acyltransferase 4)
Length = 456
Score = 37.0 bits (84), Expect = 0.057
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +2
Query: 20 TGVESWIKEKSQLRIQENNNSNERFVYPYDLGRIRNMKEIL-------TWSGRCRGDGIT 178
T +E W K+K I+ + YPY++G +N+K +L W + +GDG++
Sbjct: 208 TTIEGWEKDKVATLIRRGKIKEVK--YPYNIGIYKNIKSVLGPNPFLWLWPQKMQGDGLS 265
Query: 179 WTVKDGCGQY 208
+ V G +
Sbjct: 266 FPVNPSAGDH 275
>sp|Q6C7Q0|PFA4_YARLI Palmitoyltransferase PFA4 (Protein fatty acyltransferase 4)
Length = 342
Score = 33.9 bits (76), Expect = 0.48
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +2
Query: 2 NSARGETGVESWIKEKSQLRIQENNNSNERFVYPYDLGRIRNMKEI--------LTWSGR 157
N G T +ESW ++ + ++ + ER +PYD+ N+ L W G+
Sbjct: 190 NMCNGITQIESWECDRIESLVRRKIVTEERAEFPYDIELFTNIFNAVGSPLTFWLPW-GQ 248
Query: 158 CRGDGITW 181
RGDGIT+
Sbjct: 249 PRGDGITF 256
>sp|P24037|C552_PSEST Cytochrome c-552 precursor
Length = 291
Score = 32.3 bits (72), Expect = 1.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 106 RSGTNKKYEGDPHVEREMSGGRDNVDREGRL 198
RSG NK ++G ER M GG+ VD +G+L
Sbjct: 196 RSGENKAFDGYVATERVMEGGQALVDAQGKL 226
>sp|Q15303|ERBB4_HUMAN Receptor tyrosine-protein kinase erbB-4 precursor (p180erbB4)
(Tyrosine kinase-type cell surface receptor HER4)
Length = 1308
Score = 31.6 bits (70), Expect = 2.4
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 115 TNKKYEGDPHVEREMSGGRDNVDREGRLRPIRPYNRANQAETRQSSPFTELRNQAELQ 288
+ ++Y DP V R +D EG + P+R + + +PF R +LQ
Sbjct: 1124 STQRYSADPTVFAPERSPRGELDEEGYMTPMRDKPKQEYLNPVEENPFVSRRKNGDLQ 1181
>sp|P29768|NANH_SALTY Sialidase (Neuraminidase) (NANase) (N-acylneuraminate
glycohydrolase) (STNA)
Length = 382
Score = 31.2 bits (69), Expect = 3.1
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 89 RFVYPYDLGRIRNMKEILTWSGRCRGDGITWTVKDG-CGQYDLTIEQIKQKRDKVLHSQN 265
+ V+P + R +N+ +L S DGITW++ G C + I+ V + +N
Sbjct: 188 KLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVNNIRN 247
Query: 266 YEIRRSY 286
+RRS+
Sbjct: 248 SGLRRSF 254
>sp|Q9W705|NCOA2_XENLA Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional
intermediary factor 2) (xTIF2)
Length = 1516
Score = 29.6 bits (65), Expect = 9.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 5 SARGETGVESWIKEKSQLRIQENNNSNERFVYPYDLGRIRN 127
+ TG+ +W +++ LR+Q+NN N + LGR+ N
Sbjct: 834 AGENSTGLPAWAQKQRMLRMQQNNGFNSQLA--AQLGRLPN 872
>sp|P32639|BRR2_YEAST Pre-mRNA splicing helicase BRR2 (Protein Snu246)
Length = 2163
Score = 29.6 bits (65), Expect = 9.1
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +2
Query: 17 ETGVESWIKEKSQLRIQENN---NSNERF---VYPYDLGRIRNMKEILTWSGRCRGDGIT 178
+ VE K S +IQ++N NS+ F YP D + ++IL W G+ I
Sbjct: 77 DVAVEKTGKSASLKKIQQHNTILNSSSDFRLHYYPKDPSNVETYEQILQWVTEVLGNDIP 136
Query: 179 WTVKDGCGQYDLTIEQIKQKRD 244
+ G D+ I Q+K+ +
Sbjct: 137 HDLI--IGTADIFIRQLKENEE 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,787,611
Number of Sequences: 369166
Number of extensions: 2083322
Number of successful extensions: 6517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6509
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)