Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M24
(882 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15036|SNX17_HUMAN Sorting nexin-17 164 4e-40
sp|Q19532|YTDK_CAEEL Hypothetical protein F17H10.3 in chrom... 73 1e-12
sp|Q7NAK6|GIDA_MYCGA tRNA uridine 5-carboxymethylaminomethy... 33 1.4
sp|Q9Z6S3|TRMB_CHLPN tRNA (guanine-N(7)-)-methyltransferase... 32 1.8
sp|Q92J94|RS7_RICCN 30S ribosomal protein S7 32 3.1
sp|Q9H2U9|ADAM7_HUMAN ADAM 7 precursor (A disintegrin and m... 31 4.0
sp|Q28475|ADAM7_MACFA ADAM 7 precursor (A disintegrin and m... 31 5.2
sp|Q63180|ADAM7_RAT ADAM 7 precursor (A disintegrin and met... 30 6.8
sp|Q68XN6|RS7_RICTY 30S ribosomal protein S7 30 6.8
sp|Q9ZEY8|LEU1_BUCAI 2-isopropylmalate synthase (Alpha-isop... 30 8.9
>sp|Q15036|SNX17_HUMAN Sorting nexin-17
Length = 470
Score = 164 bits (414), Expect = 4e-40
Identities = 95/275 (34%), Positives = 154/275 (56%), Gaps = 1/275 (0%)
Frame = +3
Query: 3 YINGAHHCSARFSRLYKLYEDLKLRFPVSDLPYFPPKKFFKINXXXXXXXXXXXXXXXXK 182
++NG HC R+S+L L+E L+ + + LP FPPKK F +
Sbjct: 26 HVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQA 85
Query: 183 VSSSNKFNSDE-LHDFLKTCQKETKKIVSEPVKLSVYLMDGQKHELDVWSTDNTKTVFEA 359
V S E + FL+ Q+ET+++ +E V L V L +GQK ++V ++D T+ V EA
Sbjct: 86 VRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEA 145
Query: 360 FADVISLPRKISSKFSLFFMVVHPDMKFSIIRKLQDFEYPYVSLYEIQKLCNCRIVVRKS 539
A + LP + FSLF + D FS +RKLQ+FE PYVS+ ++ +IV+RKS
Sbjct: 146 VAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVTSLRSQ-EYKIVLRKS 204
Query: 540 VWNIELESEIDSHNSGLEILFAQVSAEIVNGWISIPDEARMNRIQNLIERKARKETLQLA 719
W+ + ++ + GL +L+AQ ++I GWI + E + ++++L E+ ++KE L+LA
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKE-QHRQLKSLQEKVSKKEFLRLA 263
Query: 720 RTLSYYGYMQLHGTSVCNRPLPNTMAIVSTGNFEI 824
+TL +YGY++ V + P + +VS GN E+
Sbjct: 264 QTLRHYGYLRF-DACVADFPEKDCPVVVSAGNSEL 297
>sp|Q19532|YTDK_CAEEL Hypothetical protein F17H10.3 in chromosome X
Length = 540
Score = 72.8 bits (177), Expect = 1e-12
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 20/295 (6%)
Frame = +3
Query: 3 YINGAHHCSARFSRLYKLYEDLKLRFPVSDL-PYFPPKKFFKINXXXXXXXXXXXXXXXX 179
+ING +H S RFS LY+ E +K +F P FP KK FK++
Sbjct: 92 HINGWYHGSVRFSHLYEFAELIKQKFSQRYKGPEFPAKKLFKLDPKAIDERRQKITKYFQ 151
Query: 180 KVSSSNKFNSDELHDF-LKTCQKETKKIVSEPVKLSVYLMDGQKHELDVWSTDNTKTVFE 356
+ + L + L Q ++ + S+ V L V+L +G+K + +D+T + +
Sbjct: 152 ALVQHPEVARHYLVEKKLLGFQIDSFRATSQYVTLDVFLGNGEKTTIKCLVSDSTLEIMK 211
Query: 357 AFADVISLPRK--ISSKFSLF-----------FMVVHPDMKFSIIRKLQDFEYPYVSLYE 497
+ + K F LF + V + + R L++FE P+VSL
Sbjct: 212 IICEKLGFKNKDQFIYHFGLFMAKGRDPTNACYSVTTENFNPLLTRFLRNFEAPFVSLST 271
Query: 498 IQKLCNCR-----IVVRKSVWNIELESEIDSHNSGLEILFAQVSAEIVNGWISIPDEARM 662
+ N + +RK +W+ +E + + +E+L+ Q + NG + E
Sbjct: 272 ANQKYNENGHYHFLCLRKLIWDSRVEEPLLDDGNFVELLYKQAMQDYKNGHMDPVKEDLD 331
Query: 663 NRIQNLIERKARKETLQLARTLSYYGYMQLHGTSVCNRPLPNTMAIVSTGNFEIV 827
+++++ + R K L+ LS Y Y ++ C+ P P T + G +I+
Sbjct: 332 SKLKSCMARNDSKMFLRTCHQLSTYSY-EIMSPCSCDYPKPGTPCEIKFGRRQII 385
>sp|Q7NAK6|GIDA_MYCGA tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
(Glucose-inhibited division protein A)
Length = 622
Score = 32.7 bits (73), Expect = 1.4
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +3
Query: 393 SSKFSLFFMVVHPDMKFSIIRKLQDFEYPYVSLYEIQKLCNCRIVVRKSVWNIELESEID 572
++ FSL+ + P++K + KL +F+Y S Y+++ L N I V+ + I+ ES I
Sbjct: 503 NTNFSLYEFLKRPEIKLIELLKLIEFDY---SNYDLELLKNIEITVKYEGY-IKKESRIV 558
Query: 573 SHNSGLEILFAQVSAEIVNGWISIPDEARMNRIQNL----IERKARKETLQLAR 722
+ LE I IP + +++QNL I++ + + L LA+
Sbjct: 559 NSLKNLES-------------IKIPKDLIYDKVQNLSIEAIDKLNKIKPLNLAQ 599
>sp|Q9Z6S3|TRMB_CHLPN tRNA (guanine-N(7)-)-methyltransferase
(tRNA(m7G46)-methyltransferase)
Length = 224
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 295 WMARNTNLMSGALIIPKQYLRHLLMS*VYHEKFPQN 402
W R + G L +P+ Y H S YH++F QN
Sbjct: 12 WKERRPCIQDGVLYVPRHYFEHQNFSTSYHQEFFQN 47
>sp|Q92J94|RS7_RICCN 30S ribosomal protein S7
Length = 160
Score = 31.6 bits (70), Expect = 3.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 198 KFNSDELHDFLKTCQKETKKIVSEPVKLSVYLMDGQKHELDVWSTDN 338
K+NS L F+ KE KK ++E + S + +KH +D + T N
Sbjct: 17 KYNSILLSRFINNIMKEGKKALAEKIVYSAFNKIEKKHRVDPYQTFN 63
>sp|Q9H2U9|ADAM7_HUMAN ADAM 7 precursor (A disintegrin and metalloproteinase domain 7)
(Sperm maturation-related glycoprotein GP-83)
Length = 754
Score = 31.2 bits (69), Expect = 4.0
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = -1
Query: 672 VFYSFWLHRESISIHLQFLLKLEQREFQDQNYVNLFLILIRYSIHSFEQQFDNCKASGSH 493
+ Y L+R+++ +HL L REF NY F + + Q D+C GS
Sbjct: 59 LLYEIKLNRKTLVLHL-----LRSREFLGSNYSETFYSMKGGAFTRHPQIMDHCFYQGSI 113
Query: 492 KEKHRDTQNLATFE*LRTSYR 430
++ +++T LR +R
Sbjct: 114 VHEYDSAASISTCNGLRGFFR 134
>sp|Q28475|ADAM7_MACFA ADAM 7 precursor (A disintegrin and metalloproteinase domain 7)
(Epididymal apical protein I) (EAP I)
Length = 776
Score = 30.8 bits (68), Expect = 5.2
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = -1
Query: 672 VFYSFWLHRESISIHLQFLLKLEQREFQDQNYVNLFLILIRYSIHSFEQQFDNCKASGSH 493
+ Y L+R+++ +HL L REF NY F + + Q D+C GS
Sbjct: 59 LMYEIKLNRKTLVLHL-----LRSREFLGSNYSETFYSMKGEAFTRHLQIMDHCFYQGSI 113
Query: 492 KEKHRDTQNLATFE*LRTSYR 430
++ +++T LR +R
Sbjct: 114 VHEYDSAASISTCNGLRGFFR 134
>sp|Q63180|ADAM7_RAT ADAM 7 precursor (A disintegrin and metalloproteinase domain 7)
(Epididymal apical protein I) (EAP I)
Length = 789
Score = 30.4 bits (67), Expect = 6.8
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = -1
Query: 672 VFYSFWLHRESISIHLQFLLKLEQREFQDQNYVNLFLILIRYSIHSFEQQFDNCKASGSH 493
+ Y L R+++++HL L+ REF NY + + R + Q D+C GS
Sbjct: 59 LLYEIKLGRKTLTLHL-----LKAREFLALNYSETYYNIKREMVTRHPQILDHCFYQGSI 113
Query: 492 KEKHRDTQNLATFE*LRTSYR 430
+ +++T LR +R
Sbjct: 114 IHEFDSAASISTCNGLRGFFR 134
>sp|Q68XN6|RS7_RICTY 30S ribosomal protein S7
Length = 160
Score = 30.4 bits (67), Expect = 6.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 198 KFNSDELHDFLKTCQKETKKIVSEPVKLSVYLMDGQKHELDVWSTDN 338
K+NS L F+ K KK V+E + S + +KH +D + T N
Sbjct: 17 KYNSILLSRFINNIMKAGKKAVAEKIVYSAFNKIEKKHSVDPYQTFN 63
>sp|Q9ZEY8|LEU1_BUCAI 2-isopropylmalate synthase (Alpha-isopropylmalate synthase)
(Alpha-IPM synthetase)
Length = 519
Score = 30.0 bits (66), Expect = 8.9
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Frame = +3
Query: 528 VRKSVWNIELESEIDSHNSGLEILFAQVSAEIVNGWIS-IPDEARMNRIQNLIER-KARK 701
+ KS+ ++ ++ G I Q A + G I+ I + A ++ +I K R+
Sbjct: 194 IHKSIISVHCHDDLGMA-VGNSISAIQAGARQIEGTINGIGERAGNTALEEIIMAIKVRE 252
Query: 702 ETLQLARTLSYYGYMQLHGTS-----VCNRPLPNTMAIVSTGNF 818
+ L ++ ++Y +++ TS +CN P+P+ AIV + F
Sbjct: 253 DILSVSTNINY---KEIYRTSKIVSQICNMPIPSNKAIVGSNAF 293
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,555,214
Number of Sequences: 369166
Number of extensions: 1856636
Number of successful extensions: 5061
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5055
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)