Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M23
(736 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05945|MLE_TODPA Myosin catalytic light chain LC-1, mant... 67 6e-11
sp|P07290|MLE_PATYE Myosin, essential light chain, adductor... 54 3e-07
sp|P07291|MLE_AEQIR Myosin essential light chain, striated ... 54 6e-07
sp|P48593|E631_DROME Calcium-binding protein E63-1 36 0.12
sp|Q58836|YE41_METJA Hypothetical protein MJ1441 31 3.0
sp|P20664|PRI1_MOUSE DNA primase small subunit (DNA primase... 31 3.9
>sp|P05945|MLE_TODPA Myosin catalytic light chain LC-1, mantle muscle
Length = 160
Score = 66.6 bits (161), Expect = 6e-11
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 45 KSEIEDIREVFDLLDFWDGRDGLV*CSQSLENLLRCNGMNPTNRILHQTRCNRKLGFETV 224
K EIE++REVFDL DFWDGRDG V ++ + +LLRC GMNPT +HQ +K+G +
Sbjct: 6 KDEIEEVREVFDLFDFWDGRDGDVDAAK-VGDLLRCLGMNPTEAQVHQHGGTKKMGEKAY 64
Query: 225 HILXXXXXXXXXXXXXXXXGNISQNYIGCPQIFLIVMDRV---YFLFQKLRHVLTMYGEK 395
+ G + ++ + F DR ++R+VL M GE+
Sbjct: 65 KL--EEILPIYEEMSSKDTGTAADEFMEAFKTF----DREGQGLISSAEIRNVLKMLGER 118
Query: 396 FVRRRNR*HF*ITDLMKIFDGNV 464
+ F D+ + DGN+
Sbjct: 119 ITEDQCNDIFTFCDIREDIDGNI 141
Score = 35.4 bits (80), Expect = 0.16
Identities = 27/90 (30%), Positives = 41/90 (45%)
Frame = +2
Query: 233 EEFFLIYEKIIQEKGKWKHFAELYWMPSNIFDRDGQGLFPFSEIATRLDYVRREVCQKKK 412
EE IYE++ + A+ + FDR+GQGL +EI L + + + +
Sbjct: 67 EEILPIYEEMSSKDTGTA--ADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQC 124
Query: 413 QITFLNY*PHEDI*W*REYEEFIKKVFEGP 502
F EDI +YE+ +KKV GP
Sbjct: 125 NDIFTFCDIREDIDGNIKYEDLMKKVMAGP 154
>sp|P07290|MLE_PATYE Myosin, essential light chain, adductor muscle (Sulfhydryl light
chain) (SHLC)
Length = 156
Score = 54.3 bits (129), Expect = 3e-07
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Frame = +3
Query: 45 KSEIEDIREVFDLLDFWDGRDGLV*CSQSLENLLRCNGMNPTNRILHQTRCNRKLGFETV 224
+ EI+D+++VF+L DFWDGRDG V + L ++ RC G+NP N + K+G ++
Sbjct: 5 QDEIDDLKDVFELFDFWDGRDGAV-DAFKLGDVCRCLGINPRNDDVFAVGGTHKMGEKS- 62
Query: 225 HILXXXXXXXXXXXXXXXXGNISQNYIGCPQIFLIVMDRV---YFLFQKLRHVLTMYGEK 395
L +Y+ + F DR + +LRHVLT GE+
Sbjct: 63 --LPFEEFLPAYEGLMDCEQGTFADYMEAFKTF----DREGQGFISGAELRHVLTALGER 116
Query: 396 FVRRRNR*HF*ITDLMKIFDGNV 464
+TDL + +GNV
Sbjct: 117 LTDEEIDEIISLTDLQEDLEGNV 139
Score = 38.1 bits (87), Expect = 0.024
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 FEEFFLIYEKIIQ-EKGKWKHFAELYWMPSNIFDRDGQGLFPFSEIATRLDYVRREVCQK 406
FEEF YE ++ E+G + + E + FDR+GQG +E+ L + + +
Sbjct: 65 FEEFLPAYEGLMDCEQGTFADYMEAF----KTFDREGQGFISGAELRHVLTALGERLTDE 120
Query: 407 KKQITFLNY*PHEDI*W*REYEEFIKKVFEGP 502
+ ED+ +YE+F+KKV GP
Sbjct: 121 EIDEIISLTDLQEDLEGNVKYEDFVKKVMAGP 152
>sp|P07291|MLE_AEQIR Myosin essential light chain, striated adductor muscle (E-LC)
(Sulfhydryl light chain) (SHLC)
Length = 157
Score = 53.5 bits (127), Expect = 6e-07
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Frame = +3
Query: 45 KSEIEDIREVFDLLDFWDGRDGLV*CSQSLENLLRCNGMNPTNRILHQTRCNRKLGFETV 224
+ EI+D+++VF+L DFWDGRDG V + L ++ RC G+NP N + K+G ++
Sbjct: 6 QDEIDDLKDVFELFDFWDGRDGAV-DAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKS- 63
Query: 225 HILXXXXXXXXXXXXXXXXGNISQNYIGCPQIFLIVMDRV---YFLFQKLRHVLTMYGEK 395
L +Y+ + F DR + +LRHVLT GE+
Sbjct: 64 --LPFEEFLPAYEGLMDCEQGTFADYMEAFKTF----DREGQGFISGAELRHVLTALGER 117
Query: 396 FVRRRNR*HF*ITDLMKIFDGNV 464
+TDL + +GNV
Sbjct: 118 LSDEDVDEIIKLTDLQEDLEGNV 140
Score = 37.7 bits (86), Expect = 0.032
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 FEEFFLIYEKIIQ-EKGKWKHFAELYWMPSNIFDRDGQGLFPFSEIATRLDYVRREVCQK 406
FEEF YE ++ E+G + + E + FDR+GQG +E+ L + + +
Sbjct: 66 FEEFLPAYEGLMDCEQGTFADYMEAF----KTFDREGQGFISGAELRHVLTALGERLSDE 121
Query: 407 KKQITFLNY*PHEDI*W*REYEEFIKKVFEGP 502
ED+ +YE+F+KKV GP
Sbjct: 122 DVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGP 153
>sp|P48593|E631_DROME Calcium-binding protein E63-1
Length = 193
Score = 35.8 bits (81), Expect = 0.12
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3
Query: 36 PFPKSEIEDIREVFDLLDFWDGRDGLV*CSQSLENLLRCNGMNPTNRILH 185
PF + EI+D+R FDLLD RDG V + L+ +L+ G+N ++ ++H
Sbjct: 31 PFTEVEIKDLRTAFDLLD--RNRDGRV-TANELQFMLKNLGINVSDELIH 77
>sp|Q58836|YE41_METJA Hypothetical protein MJ1441
Length = 1226
Score = 31.2 bits (69), Expect = 3.0
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +2
Query: 245 LIYEKII----QEKGKWKHFAELYWMPSNIFDRDGQGL 346
L+ EK+I +E+G++ LYWM S+I DG+G+
Sbjct: 829 LLAEKLINRYLEEEGRYPENIALYWMASDIMWADGEGM 866
>sp|P20664|PRI1_MOUSE DNA primase small subunit (DNA primase 49 kDa subunit) (p49)
Length = 417
Score = 30.8 bits (68), Expect = 3.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 227 YFEEFFLIYEKIIQEKGKWKHFAELYWMPSNIFDRDGQGLFPFSEIATRLDYVRR 391
YFEE+ L+ + I++ K W L +P I D +G F R +++R+
Sbjct: 222 YFEEYALVGQDILENKENWDKILAL--VPETIHDELQRGFQKFHSSPQRWEHLRK 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,357,851
Number of Sequences: 369166
Number of extensions: 1738406
Number of successful extensions: 4331
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4325
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)