Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M20
(308 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 141 4e-34
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 127 6e-30
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 126 2e-29
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 123 1e-28
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 123 1e-28
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 123 2e-28
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 123 2e-28
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 122 3e-28
sp|P34728|ARF_CRYNE ADP-ribosylation factor 120 1e-27
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 119 2e-27
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 141 bits (356), Expect = 4e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST
Sbjct: 116 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 175
Query: 194 TLKNRSKK 217
TLKNRSKK
Sbjct: 176 TLKNRSKK 183
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 127 bits (320), Expect = 6e-30
Identities = 61/66 (92%), Positives = 62/66 (93%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLLVFANKQDLP AMN AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS
Sbjct: 116 LRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSN 175
Query: 194 TLKNRS 211
LKNRS
Sbjct: 176 QLKNRS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 126 bits (316), Expect = 2e-29
Identities = 59/67 (88%), Positives = 63/67 (94%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLL+FANKQDLPNAMN AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS
Sbjct: 116 LRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 175
Query: 194 TLKNRSK 214
LKN ++
Sbjct: 176 QLKNANR 182
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 123 bits (309), Expect = 1e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDA+LLVFANKQDLPNAMN AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST
Sbjct: 116 LRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLST 175
Query: 194 TLKNR 208
LKN+
Sbjct: 176 NLKNQ 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 123 bits (309), Expect = 1e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+
Sbjct: 116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLAN 175
Query: 194 TLKNR 208
LKN+
Sbjct: 176 QLKNK 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 123 bits (308), Expect = 2e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS
Sbjct: 116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 175
Query: 194 TLKNR 208
L+N+
Sbjct: 176 QLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 123 bits (308), Expect = 2e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS
Sbjct: 116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 175
Query: 194 TLKNR 208
L+N+
Sbjct: 176 QLRNQ 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 122 bits (306), Expect = 3e-28
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLLVF NKQDLPNAMN AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS
Sbjct: 116 LRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSN 175
Query: 194 TLKNR 208
LKN+
Sbjct: 176 QLKNQ 180
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 120 bits (301), Expect = 1e-27
Identities = 57/66 (86%), Positives = 60/66 (90%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDA+LLVFANKQDLPNAMN AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS
Sbjct: 116 LRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSA 175
Query: 194 TLKNRS 211
LK +S
Sbjct: 176 NLKRKS 181
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 119 bits (298), Expect = 2e-27
Identities = 56/66 (84%), Positives = 60/66 (90%)
Frame = +2
Query: 14 LRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLST 193
LRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS
Sbjct: 116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
Query: 194 TLKNRS 211
L N++
Sbjct: 176 NLANKT 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,777,056
Number of Sequences: 369166
Number of extensions: 599513
Number of successful extensions: 1519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)