Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M19-1
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 157 1e-38
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 157 1e-38
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 151 1e-36
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 149 3e-36
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 148 9e-36
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 147 1e-35
sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (N... 147 2e-35
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 146 3e-35
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 146 3e-35
sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (N... 146 3e-35
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 157 bits (398), Expect = 1e-38
Identities = 72/116 (62%), Positives = 90/116 (77%)
Frame = +1
Query: 115 AIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRP 294
A+K+ P + LLE HY +LK+KPFFP L+ YMLSGP+V MVW+G ++VK GR +LGAT P
Sbjct: 36 AMKLTSPSRSLLEQHYSDLKEKPFFPGLVTYMLSGPIVAMVWEGKDVVKTGRTILGATNP 95
Query: 295 IDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
+ S PGTIRGDFA GRN+ HGSDSVESAK+EIGLWFT +++ YKL A W+ E
Sbjct: 96 LASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNAFGWIYE 151
Score = 46.6 bits (109), Expect = 4e-05
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 18 ERSYIMVKPVGVQRG*VGTIITRFEQRGFKLICNK 122
E+++I +KP GVQRG VG II+RFE RGFKL K
Sbjct: 4 EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMK 38
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 157 bits (397), Expect = 1e-38
Identities = 74/116 (63%), Positives = 87/116 (75%)
Frame = +1
Query: 115 AIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRP 294
A+K +Q K LLE HY EL DKPF+PKLI+YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 36 AMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNP 95
Query: 295 IDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESAK+EI LWF ++L EY+ CA W+ E
Sbjct: 96 ADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 18 ERSYIMVKPVGVQRG*VGTIITRFEQRGFKLICNK 122
ER++I VKP GVQR VG +I RFEQ+GFKL+ K
Sbjct: 4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMK 38
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 151 bits (381), Expect = 1e-36
Identities = 69/116 (59%), Positives = 88/116 (75%)
Frame = +1
Query: 115 AIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRP 294
A+K++Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 37 AMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNP 96
Query: 295 IDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L +YK CA W+ E
Sbjct: 97 ADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152
Score = 47.0 bits (110), Expect = 3e-05
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = +3
Query: 9 AYHERSYIMVKPVGVQRG*VGTIITRFEQRGFKLICNK 122
A ER++I +KP GVQR VG II RFEQ+GF+LI K
Sbjct: 2 ANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMK 39
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 149 bits (377), Expect = 3e-36
Identities = 69/116 (59%), Positives = 88/116 (75%)
Frame = +1
Query: 115 AIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRP 294
A+K ++ ++ L+ HY +LKD+PFFP L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 37 AMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNP 96
Query: 295 IDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L +YK CA WV E
Sbjct: 97 ADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDWVYE 152
Score = 48.5 bits (114), Expect = 9e-06
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 18 ERSYIMVKPVGVQRG*VGTIITRFEQRGFKLICNK 122
ER++I +KP GVQRG VG II RFEQ+GF+L+ K
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMK 39
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 148 bits (373), Expect = 9e-36
Identities = 68/115 (59%), Positives = 85/115 (73%)
Frame = +1
Query: 118 IKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPI 297
+K MQ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 38 LKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPA 97
Query: 298 DSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L +Y CA W+ E
Sbjct: 98 DSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
Score = 47.4 bits (111), Expect = 2e-05
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +3
Query: 18 ERSYIMVKPVGVQRG*VGTIITRFEQRGFKLI 113
ER++I +KP GVQRG VG II RFEQ+GF+L+
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLV 36
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 147 bits (371), Expect = 1e-35
Identities = 67/115 (58%), Positives = 85/115 (73%)
Frame = +1
Query: 118 IKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPI 297
+K +Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 38 LKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPA 97
Query: 298 DSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSV+SA++EI LWF ++L EYK CA W+ E
Sbjct: 98 DSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 9 AYHERSYIMVKPVGVQRG*VGTIITRFEQRGFKLI 113
A ER++I +KP GVQRG VG II RFEQ+GF+L+
Sbjct: 2 ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLV 36
>sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (NDK NBR-B) (NDP kinase NBR-B)
Length = 152
Score = 147 bits (370), Expect = 2e-35
Identities = 68/116 (58%), Positives = 85/116 (73%)
Frame = +1
Query: 115 AIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRP 294
A+K M+ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 37 AMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNP 96
Query: 295 IDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA W+ E
Sbjct: 97 ADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCAQNWIYE 152
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +3
Query: 9 AYHERSYIMVKPVGVQRG*VGTIITRFEQRGFKLICNK 122
A ER++I +KP GVQRG +G II RFEQ+GF+L+ K
Sbjct: 2 ANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMK 39
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 146 bits (369), Expect = 3e-35
Identities = 68/116 (58%), Positives = 87/116 (75%)
Frame = +1
Query: 115 AIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRP 294
A+K ++ ++ L+ HY +LKD+PFFP L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 37 AMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNP 96
Query: 295 IDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L +YK CA WV E
Sbjct: 97 ADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152
Score = 48.5 bits (114), Expect = 9e-06
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 18 ERSYIMVKPVGVQRG*VGTIITRFEQRGFKLICNK 122
ER++I +KP GVQRG VG II RFEQ+GF+L+ K
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMK 39
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 146 bits (369), Expect = 3e-35
Identities = 67/115 (58%), Positives = 85/115 (73%)
Frame = +1
Query: 118 IKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPI 297
+K +Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 38 LKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPA 97
Query: 298 DSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L +YK CA W+ E
Sbjct: 98 DSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCAQNWIYE 152
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 9 AYHERSYIMVKPVGVQRG*VGTIITRFEQRGFKLI 113
A ER++I +KP GVQRG VG II RFEQ+GF+L+
Sbjct: 2 ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLV 36
>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
Length = 152
Score = 146 bits (369), Expect = 3e-35
Identities = 68/116 (58%), Positives = 85/116 (73%)
Frame = +1
Query: 115 AIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRP 294
A+K M+ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P
Sbjct: 37 AMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNP 96
Query: 295 IDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 462
DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA W+ E
Sbjct: 97 ADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCAQNWIYE 152
Score = 48.5 bits (114), Expect = 9e-06
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +3
Query: 9 AYHERSYIMVKPVGVQRG*VGTIITRFEQRGFKLICNK 122
A ER++I +KP GVQRG +G II RFEQ+GF+L+ K
Sbjct: 2 ANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMK 39
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,864,980
Number of Sequences: 369166
Number of extensions: 1369259
Number of successful extensions: 3748
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3716
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)