Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M14
(503 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VWF2|SAYP_DROME Supporter of activation of yellow protein 32 1.1
sp|Q03164|HRX_HUMAN Zinc finger protein HRX (ALL-1) (Tritho... 27 3.9
sp|P55200|HRX_MOUSE Zinc finger protein HRX (ALL-1) 27 3.9
sp|Q60C67|CLPX1_METCA ATP-dependent Clp protease ATP-bindin... 28 9.5
>sp|Q9VWF2|SAYP_DROME Supporter of activation of yellow protein
Length = 2006
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +2
Query: 2 KVRNETWTCSYRFC-----ENRNPGNVKYCKDCGLDRDARKIDIGAPMWRCTG--DVpre 160
+VRN W C+ C ++ PG + YC+ C D G ++ C G VP
Sbjct: 1737 RVRNYNWQCAGCKCCIKCRSSQRPGKMLYCEQC---------DRGYHIY-CLGLRTVPDG 1786
Query: 161 IWICDKC 181
W C++C
Sbjct: 1787 RWSCERC 1793
>sp|Q03164|HRX_HUMAN Zinc finger protein HRX (ALL-1) (Trithorax-like protein)
Length = 3969
Score = 26.6 bits (57), Expect(2) = 3.9
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +2
Query: 14 ETWTCSY-RFCE--NRNPGNVKYCKDCGLDRDARKIDIGAPMWRCTGDVpreIWICDKC 181
E W C +FC R K +C R++ + P + +++WIC KC
Sbjct: 1472 ENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKC 1530
Score = 21.6 bits (44), Expect(2) = 3.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 167 ICDKCYAINDISRYLYLC 220
+CDKCY +D + C
Sbjct: 1571 LCDKCYDDDDYESKMMQC 1588
>sp|P55200|HRX_MOUSE Zinc finger protein HRX (ALL-1)
Length = 3866
Score = 26.6 bits (57), Expect(2) = 3.9
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +2
Query: 14 ETWTCSY-RFCE--NRNPGNVKYCKDCGLDRDARKIDIGAPMWRCTGDVpreIWICDKC 181
E W C +FC R K +C R++ + P + +++WIC KC
Sbjct: 1371 ENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKC 1429
Score = 21.6 bits (44), Expect(2) = 3.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 167 ICDKCYAINDISRYLYLC 220
+CDKCY +D + C
Sbjct: 1470 LCDKCYDDDDYESKMMQC 1487
>sp|Q60C67|CLPX1_METCA ATP-dependent Clp protease ATP-binding subunit clpX 1
Length = 422
Score = 28.5 bits (62), Expect = 9.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 44 ENRNPGNVKYCKDCGLDR-DARKIDIGAPMWRCTGDVpreIWICDKCYAI-NDISR 205
+NR G + YC CG + + RK+ G +++CD+C + NDI R
Sbjct: 6 KNRESGKLLYCSFCGKSQHEVRKLIAGP-----------AVFVCDECVELCNDIIR 50
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,767,144
Number of Sequences: 369166
Number of extensions: 963156
Number of successful extensions: 2701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2695
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)