Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L20
(648 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43236|SEPT4_HUMAN Septin-4 (Peanut-like protein 2) (Bra... 78 2e-14
sp|P28661|SEPT4_MOUSE Septin-4 (Peanut-like protein 2) (Bra... 77 3e-14
sp|P42209|SEPT1_MOUSE Septin-1 (Differentiation protein 6) ... 75 2e-13
sp|Q8WYJ6|SEPT1_HUMAN Septin-1 (LARP) (Serologically define... 75 2e-13
sp|Q9Z2Q6|SEPT5_MOUSE Septin-5 (Peanut-like protein 1) (Cel... 73 7e-13
sp|Q99719|SEPT5_HUMAN Septin-5 (Peanut-like protein 1) (Cel... 72 2e-12
sp|Q9WVC0|SEPT7_RAT Septin-7 (CDC10 protein homolog) 60 5e-09
sp|O55131|SEPT7_MOUSE Septin-7 (CDC10 protein homolog) 60 5e-09
sp|Q5R481|SEPT7_PONPY Septin-7 60 5e-09
sp|Q16181|SEPT7_HUMAN Septin-7 (CDC10 protein homolog) >gi|... 60 5e-09
>sp|O43236|SEPT4_HUMAN Septin-4 (Peanut-like protein 2) (Brain protein H5) (Cell division
control-related protein 2) (hCDCREL-2) (Bradeion beta)
(CE5B3 beta) (Cerebral protein 7)
Length = 478
Score = 77.8 bits (190), Expect = 2e-14
Identities = 41/118 (34%), Positives = 64/118 (54%)
Frame = +2
Query: 5 EVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRANCITERMNRRQNERQXXXXXX 184
EVEN HCDF +L+ L++THMQDLKD+T + YENYRA CI ER
Sbjct: 371 EVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKL-- 428
Query: 185 XXXXXNFDRNQDNFSDMKHEIIDPGFEAIVDPENLLHHKEEEIQRMRVLCEKLESQLR 358
+++ +D + PG + + E L+ K+EE++RM+ + K++ Q++
Sbjct: 429 ---------TRESGTDFPIPAVPPGTDP--ETEKLIREKDEELRRMQEMLHKIQKQMK 475
>sp|P28661|SEPT4_MOUSE Septin-4 (Peanut-like protein 2) (Brain protein H5)
Length = 478
Score = 77.4 bits (189), Expect = 3e-14
Identities = 41/118 (34%), Positives = 64/118 (54%)
Frame = +2
Query: 5 EVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRANCITERMNRRQNERQXXXXXX 184
EVEN HCDF +L+ L++THMQDLKD+T + YENYRA CI ER
Sbjct: 371 EVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKL-- 428
Query: 185 XXXXXNFDRNQDNFSDMKHEIIDPGFEAIVDPENLLHHKEEEIQRMRVLCEKLESQLR 358
+++ +D + PG + + E L+ K+EE++RM+ + K++ Q++
Sbjct: 429 ---------TRESGTDFPIPAVPPGTDP--ETEKLIREKDEELRRMQEMLHKIQRQMK 475
>sp|P42209|SEPT1_MOUSE Septin-1 (Differentiation protein 6) (Diff6 protein)
Length = 365
Score = 74.7 bits (182), Expect = 2e-13
Identities = 40/120 (33%), Positives = 63/120 (52%)
Frame = +2
Query: 5 EVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRANCITERMNRRQNERQXXXXXX 184
EVEN HCDF L+ L++TH+QDLK++T D+LYE YRA C+ +R
Sbjct: 251 EVENPHHCDFLNLRRMLVQTHLQDLKEVTHDLLYEGYRARCLQSLARPGARDR------- 303
Query: 185 XXXXXNFDRNQDNFSDMKHEIIDPGFEAIVDPENLLHHKEEEIQRMRVLCEKLESQLRAS 364
++ S I + D E L+ K+EE++RM+ + EK+++Q++ S
Sbjct: 304 --------ASRSKLSRQSATEIPLPMLPLADTEKLIREKDEELRRMQEMLEKMQAQMQQS 355
>sp|Q8WYJ6|SEPT1_HUMAN Septin-1 (LARP) (Serologically defined breast cancer antigen
NY-BR-24)
Length = 367
Score = 74.7 bits (182), Expect = 2e-13
Identities = 40/120 (33%), Positives = 63/120 (52%)
Frame = +2
Query: 5 EVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRANCITERMNRRQNERQXXXXXX 184
EVEN HCDF L+ L++TH+QDLK++T D+LYE YRA C+ +R
Sbjct: 253 EVENPHHCDFLNLRRMLVQTHLQDLKEVTHDLLYEGYRARCLQSLARPGARDR------- 305
Query: 185 XXXXXNFDRNQDNFSDMKHEIIDPGFEAIVDPENLLHHKEEEIQRMRVLCEKLESQLRAS 364
++ S I + D E L+ K+EE++RM+ + EK+++Q++ S
Sbjct: 306 --------ASRSKLSRQSATEIPLPMLPLADTEKLIREKDEELRRMQEMLEKMQAQMQQS 357
>sp|Q9Z2Q6|SEPT5_MOUSE Septin-5 (Peanut-like protein 1) (Cell division control related
protein 1) (CDCREL-1)
Length = 347
Score = 72.8 bits (177), Expect = 7e-13
Identities = 41/118 (34%), Positives = 65/118 (55%)
Frame = +2
Query: 5 EVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRANCITERMNRRQNERQXXXXXX 184
EVEN HCDF +L+ L++THM DLKD+T DV YENYRA+CI + ++
Sbjct: 249 EVENQAHCDFVKLRNMLIRTHMHDLKDVTCDVHYENYRAHCIQQMTSK------------ 296
Query: 185 XXXXXNFDRNQDNFSDMKHEIIDPGFEAIVDPENLLHHKEEEIQRMRVLCEKLESQLR 358
QD+ + I+ P + E L+ K+EE++RM+ + +K++ Q++
Sbjct: 297 --------LTQDSRMESPIPIL-PLPTPDAETEKLIRMKDEELRRMQEMLQKMKQQMQ 345
>sp|Q99719|SEPT5_HUMAN Septin-5 (Peanut-like protein 1) (Cell division control related
protein 1) (CDCREL-1)
Length = 369
Score = 71.6 bits (174), Expect = 2e-12
Identities = 40/118 (33%), Positives = 65/118 (55%)
Frame = +2
Query: 5 EVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRANCITERMNRRQNERQXXXXXX 184
EVEN HCDF +L+ L++THM DLKD+T DV YENYRA+CI + ++
Sbjct: 271 EVENQAHCDFVKLRNMLIRTHMHDLKDVTCDVHYENYRAHCIQQMTSK------------ 318
Query: 185 XXXXXNFDRNQDNFSDMKHEIIDPGFEAIVDPENLLHHKEEEIQRMRVLCEKLESQLR 358
QD+ + I+ P + E L+ K+EE++RM+ + ++++ Q++
Sbjct: 319 --------LTQDSRMESPIPIL-PLPTPDAETEKLIRMKDEELRRMQEMLQRMKQQMQ 367
>sp|Q9WVC0|SEPT7_RAT Septin-7 (CDC10 protein homolog)
Length = 436
Score = 60.1 bits (144), Expect = 5e-09
Identities = 25/40 (62%), Positives = 35/40 (87%)
Frame = +2
Query: 2 SEVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRA 121
+EVEN +HCDF+ L+ L++THMQDLKD+T++V YENYR+
Sbjct: 271 AEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRS 310
>sp|O55131|SEPT7_MOUSE Septin-7 (CDC10 protein homolog)
Length = 436
Score = 60.1 bits (144), Expect = 5e-09
Identities = 25/40 (62%), Positives = 35/40 (87%)
Frame = +2
Query: 2 SEVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRA 121
+EVEN +HCDF+ L+ L++THMQDLKD+T++V YENYR+
Sbjct: 271 AEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRS 310
>sp|Q5R481|SEPT7_PONPY Septin-7
Length = 437
Score = 60.1 bits (144), Expect = 5e-09
Identities = 25/40 (62%), Positives = 35/40 (87%)
Frame = +2
Query: 2 SEVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRA 121
+EVEN +HCDF+ L+ L++THMQDLKD+T++V YENYR+
Sbjct: 272 AEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRS 311
>sp|Q16181|SEPT7_HUMAN Septin-7 (CDC10 protein homolog)
sp|Q6Q137|SEPT7_BOVIN Septin-7 (CDC10 protein homolog)
Length = 437
Score = 60.1 bits (144), Expect = 5e-09
Identities = 25/40 (62%), Positives = 35/40 (87%)
Frame = +2
Query: 2 SEVENNKHCDFSRLKVFLLKTHMQDLKDMTSDVLYENYRA 121
+EVEN +HCDF+ L+ L++THMQDLKD+T++V YENYR+
Sbjct: 272 AEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRS 311
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,352,632
Number of Sequences: 369166
Number of extensions: 1298516
Number of successful extensions: 2872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)