Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L15
(381 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8D2B6|Y438_WIGBR Hypothetical UPF0350 protein WIGBR4380 33 0.26
sp|Q89YY3|CLPB_BACTN Chaperone clpB 33 0.26
sp|Q9DDU0|HXABA_BRARE Homeobox protein Hox-A11a 33 0.26
sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 (180 kDa r... 32 0.59
sp|Q03368|BLVR_BOVIN Bovine leukemia virus cell receptor pr... 31 0.77
sp|P25777|ORYB_ORYSA Oryzain beta chain precursor 31 1.0
sp|P14586|HRP3_PLAFS Histidine-rich protein 31 1.0
sp|Q15431|SYCP1_HUMAN Synaptonemal complex protein 1 (SCP-1... 31 1.0
sp|P15305|DYHC_ONCMY Dynein heavy chain (DYHC) 31 1.0
sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromo... 30 1.3
>sp|Q8D2B6|Y438_WIGBR Hypothetical UPF0350 protein WIGBR4380
Length = 84
Score = 32.7 bits (73), Expect = 0.26
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 294 ILHIFHHKFYRFYHNHQKLFFPNFLQLDDFFYFDC 190
I++ F K + F N +K+FF N L DD + + C
Sbjct: 23 IINNFFKKEFDFLSNKEKIFFVNMLSYDDIYLYKC 57
>sp|Q89YY3|CLPB_BACTN Chaperone clpB
Length = 862
Score = 32.7 bits (73), Expect = 0.26
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Frame = +3
Query: 12 DKCEELNGKIDEECEDPYEALDKECD-PKYEALDKECLPKYVEVNANFAKSVVNAKVKCE 188
++ +E++ KI ++ E EA+ +E D PK E + KE L + EV +F AK + E
Sbjct: 408 EELDEISRKI-KQLEIEREAIKRENDKPKLEIIGKE-LAELKEVEKSF-----KAKWQSE 460
Query: 189 NNQSKKSRQVVRNLEKIIF--------GDYDKIDKTCDGKYAELDKSCLKRYEDL 329
K +Q +E + F GDY K+ + GK LDK E L
Sbjct: 461 KTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVAEIRYGKLQALDKEIEDTQEKL 515
>sp|Q9DDU0|HXABA_BRARE Homeobox protein Hox-A11a
Length = 284
Score = 32.7 bits (73), Expect = 0.26
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Frame = +3
Query: 39 IDEECEDPYEALDKECDPKYEALDKECLPKYVEVNANFAKSVVNAKVKCENNQSKKSR-- 212
ID + P+ C P +++ KECLP V F K+ +A +N + S
Sbjct: 68 IDPSTKWPHRGPLAHCYPSEDSVHKECLPAVTTVGEMFPKNNASAYYHSTSNTTSASNFY 127
Query: 213 -QVVRN------LEKIIFGDYDKIDKTCDGKYAELDK 302
V RN ++ Y D D YA DK
Sbjct: 128 GNVGRNGVLPQAFDQFFDTAYGGSDSVVDNDYAARDK 164
>sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 (180 kDa ribosome receptor) (RRp)
Length = 1534
Score = 31.6 bits (70), Expect = 0.59
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 12 DKCEELNGKIDEECEDPYEALDKECDPKYEAL-DKECLPKYVEVNANFAKSVVNAKVKCE 188
D +L K+ E E+ L ECD L + E + K ++ + + V AKV
Sbjct: 1234 DPSSDLASKL-REAEETQNNLQAECDQYRTILAETEGMLKDLQKSVEEEEQVWKAKVSAT 1292
Query: 189 NNQSKKSRQVVRNLEKII 242
+ +KSR V++LE I+
Sbjct: 1293 EEELQKSRVTVKHLEDIV 1310
>sp|Q03368|BLVR_BOVIN Bovine leukemia virus cell receptor precursor (BLV-R) (BLVPCP1)
Length = 843
Score = 31.2 bits (69), Expect = 0.77
Identities = 29/97 (29%), Positives = 39/97 (40%)
Frame = +3
Query: 42 DEECEDPYEALDKECDPKYEALDKECLPKYVEVNANFAKSVVNAKVKCENNQSKKSRQVV 221
D++ DPY ALD + D D E LP NA +KS V +SKK +
Sbjct: 149 DKDPNDPYRALDIDLDK--PLADSEKLPVQKHRNAETSKSPEKEDVPLVEKKSKKPK--- 203
Query: 222 RNLEKIIFGDYDKIDKTCDGKYAELDKSCLKRYEDLD 332
K +K K E K +++ EDLD
Sbjct: 204 ------------KKEKKHKEKEREKKKKEVEKGEDLD 228
>sp|P25777|ORYB_ORYSA Oryzain beta chain precursor
Length = 471
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 30 NGKIDEECEDPYEALDKECDPKYEALDKECLPKYVEVNANFAKSVVNA 173
NG ID E + PY+A+D +CD E + + +V N KS+ A
Sbjct: 219 NGGIDTEDDYPYKAVDGKCDINRENAKVVSIDGFEDVPQNDEKSLQKA 266
>sp|P14586|HRP3_PLAFS Histidine-rich protein
Length = 82
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = -1
Query: 288 HIFHHKFYRFYHNHQKLFFPNFLQLDDFFYFDCFHISLLHSQLIWQNLHSLLHISVNI-- 115
H +HH F+R +H + L+ + + H Q++ QN H + I +++
Sbjct: 4 HRYHHYFHRHHHLNHHLYHRH------HHHRHHHHRHHHRHQILHQNRHQIHQILLSLNN 57
Query: 114 ------LYLMLHILDHILCLMLH 64
++L L IL H++ L++H
Sbjct: 58 KIMGYAIFLFLSILLHLVYLVIH 80
>sp|Q15431|SYCP1_HUMAN Synaptonemal complex protein 1 (SCP-1 protein)
Length = 976
Score = 30.8 bits (68), Expect = 1.0
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Frame = +3
Query: 3 RHEDKCEELNGKIDEECEDPYEALDKECDPKYEALDKECLPKYVEVNANFAKSVVNAKVK 182
+ E+K + G + + + YE + + + E+ + K+ E+ + K + + K+
Sbjct: 619 QQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQ----KFGEITDTYQKEIEDKKIS 674
Query: 183 CEN--NQSKKSRQVVRNLEKIIFGDYDKIDKTCDGKYAELDKSCLKRYEDLDKLC----- 341
EN + +K++ + K+ +IDK C K AE+ K DK+
Sbjct: 675 EENLLEEVEKAKVIADEAVKL----QKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDS 730
Query: 342 -LPLYKEQEK 368
L LYK +E+
Sbjct: 731 ELGLYKSKEQ 740
>sp|P15305|DYHC_ONCMY Dynein heavy chain (DYHC)
Length = 515
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/114 (17%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = -1
Query: 369 IFLVLYIMEDTIYQDLHIV*DKIYPILHIFHHKFYRF-YHNHQKLFFPNFLQLDDFFYFD 193
I ++ Y + Y LH++ Y ILH+ + + Y H + + +Q +
Sbjct: 263 IHVIQYSIHVIQYSILHVI---QYSILHVIQYSIHVIQYSIHVIQYSIHVIQ------YS 313
Query: 192 CFHISLLHSQLIWQNLHSLLHISVNILYLMLHILDHILCLMLHTDLHILHQFYH 31
H+ +I ++H ++ S++++ +H++ + + ++ ++ LH++ H
Sbjct: 314 ILHVIQYSIHVIQYSIH-VIQYSIHVIQYSIHVIQYSIHVIQYSILHVIQYSIH 366
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/124 (17%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Frame = -1
Query: 369 IFLVLYIMEDTIYQDLHIV*DKIYPILHIFHHKFYRFYHN--HQKLFFPNFLQLDDFFYF 196
I ++ Y + Y LH++ Y ILH+ + + ++ H + + +Q +
Sbjct: 379 IHVIQYSIHVIQYSILHVI---QYSILHVIQYSIHVIQYSILHVIQYSIHVIQ----YSI 431
Query: 195 DCFHISLLHSQLIWQNLHSLLHISVNILYLMLHILDHILCLMLHTDLHI----LHQFYH* 28
S+LH +I ++H + + ++++ +H++ + + ++ ++ LH+ +H +
Sbjct: 432 HVIQYSILH--VIQYSIHVIQYSILHVIQYSIHVIQYSIHVIQYSILHVIQYSIHVIQYS 489
Query: 27 VLHI 16
+LH+
Sbjct: 490 ILHV 493
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Frame = -1
Query: 381 LHNPIFLVLYIMEDTI----YQDLHIV*DKIYPILHIFHHKFYRFYHNHQKLFFPNFLQL 214
LH + +L++++ +I Y LH++ I+ I + H Y H Q
Sbjct: 394 LHVIQYSILHVIQYSIHVIQYSILHVIQYSIHVIQYSIHVIQYSILHVIQ---------- 443
Query: 213 DDFFYFDCFHISLLHSQLIWQNLHSLLHISVNILYLMLHILDHILCLMLHTDLHI----L 46
+ S+LH +I ++H + + I Y +LH++ + + ++ ++ LH+ +
Sbjct: 444 ---YSIHVIQYSILH--VIQYSIHVIQYSIHVIQYSILHVIQYSIHVIQYSILHVIQYSI 498
Query: 45 HQFYH*VLHI 16
H + +LH+
Sbjct: 499 HVIQYSILHV 508
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = -1
Query: 381 LHNPIFLVLYIMEDTIYQDLHIV*DKIYPILHIFHHKFYRF-YHNHQKLFFPNFLQLD-D 208
+H + +L++++ Y LH++ Y ILH+ + + Y H + + +Q
Sbjct: 189 IHVIQYSILHVIQ---YSILHVI---QYSILHVIQYSIHVIQYSIHVIQYSIHVIQYSIH 242
Query: 207 FFYFDCFHISLLHSQLIWQNLHSLLHISVNILYLMLHILDHILCLMLHTDLHILHQFYH 31
+ H+ +I ++H + + I Y +LH++ + + ++ +H++ H
Sbjct: 243 VIQYSILHVIQYSIHVIQYSIHVIQYSIHVIQYSILHVIQYSILHVIQYSIHVIQYSIH 301
Score = 30.0 bits (66), Expect = 1.7
Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Frame = -1
Query: 381 LHNPIFLVLYIMEDTIYQDLHIV*DKIYPILHIFHHKFYRFYHNHQKLFFPNFLQLDDFF 202
LH + +L++++ Y LH++ I+ I + H Y + + + L
Sbjct: 197 LHVIQYSILHVIQ---YSILHVIQYSIHVIQYSIHVIQYSIHVIQYSIHVIQYSILHVIQ 253
Query: 201 YFDCFHISLLHSQLIWQNLH----SLLHISVNILYLMLHILD---HILCLMLHTDLHILH 43
Y H+ +I ++H S+LH+ I Y +LH++ H++ +H + +H
Sbjct: 254 Y--SIHVIQYSIHVIQYSIHVIQYSILHV---IQYSILHVIQYSIHVIQYSIHVIQYSIH 308
Query: 42 QFYH*VLHI 16
+ +LH+
Sbjct: 309 VIQYSILHV 317
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/129 (14%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Frame = -1
Query: 381 LHNPIFLVLYIMEDTIY---QDLHIV*DKIYPILHIFHHKFYRFYHNHQKLFFPNFLQLD 211
+H + +L++++ +I+ +H++ I+ I + H Y H Q
Sbjct: 350 IHVIQYSILHVIQYSIHVIQYSIHVIQYSIHVIQYSIHVIQYSILHVIQYSILHVIQYSI 409
Query: 210 DFFYFDCFHISLLHSQLIWQNLHSLLHISVNILYLMLHILD----HILCLMLHTDLHILH 43
+ H+ +I ++H + + ++++ +H++ H++ +H + +H
Sbjct: 410 HVIQYSILHVIQYSIHVIQYSIHVIQYSILHVIQYSIHVIQYSILHVIQYSIHVIQYSIH 469
Query: 42 QFYH*VLHI 16
+ +LH+
Sbjct: 470 VIQYSILHV 478
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/123 (17%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Frame = -1
Query: 381 LHNPIFLVLYIMEDTIY---QDLHIV*DKIYPILHIFHHKFYRFYHNHQKLFFPNFLQLD 211
LH + +L++++ +I+ +H++ I+ I + H Y H Q + + +Q
Sbjct: 205 LHVIQYSILHVIQYSIHVIQYSIHVIQYSIHVIQYSIHVIQYSILHVIQ--YSIHVIQYS 262
Query: 210 DFFYFDCFHI---SLLHSQLIWQNLHSLLHISVNILYLMLHILDHILCLMLHTDLHILHQ 40
H+ S+LH +I ++ ++ S++++ +H++ + + ++ ++ LH++
Sbjct: 263 IHVIQYSIHVIQYSILH--VIQYSILHVIQYSIHVIQYSIHVIQYSIHVIQYSILHVIQY 320
Query: 39 FYH 31
H
Sbjct: 321 SIH 323
>sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromosome III
Length = 1010
Score = 30.4 bits (67), Expect = 1.3
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +3
Query: 12 DKCEELNGKIDEECEDPYEALDKECD----PKYEALDKECLPKYVEVNANFAKSVVNAKV 179
D+ E+L+ +D + P EA +++ D K + +D + VN A A+V
Sbjct: 393 DEVEDLDMDMDITEQQPCEAGNQQNDGLQLQKEDLMDISVIRDSPAVNDTMAVFQSPARV 452
Query: 180 KCENNQSKKSRQVVRNLEKIIFGDYDKIDKTCDGKYAELDKS 305
K N S ++ + + I+FGD ID+T + L KS
Sbjct: 453 KIGANNS-----IIDSQKSIVFGDEMSIDETQNDGTLTLPKS 489
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,427,935
Number of Sequences: 369166
Number of extensions: 699113
Number of successful extensions: 2915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2881
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)