Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L14
(423 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6PFS7|APG3L_BRARE Autophagy protein 3-like (APG3-like) 172 2e-43
sp|Q9NT62|APG3L_HUMAN Autophagy protein 3-like (APG3-like) ... 171 4e-43
sp|Q9CPX6|APG3L_MOUSE Autophagy protein 3-like (APG3-like) 171 4e-43
sp|Q6AZ50|APG3L_RAT Autophagy protein 3-like (APG3-like) (P... 171 4e-43
sp|Q5I0S6|APG3L_XENTR Autophagy protein 3-like (APG3-like) 171 6e-43
sp|Q6GQE7|APG3L_XENLA Autophagy protein 3-like (APG3-like) 169 2e-42
sp|O43035|ATG3_SCHPO Autophagy-related protein 3 (Autophagy... 101 7e-22
sp|Q6CL19|ATG3_KLULA Autophagy-related protein 3 (Autophagy... 95 5e-20
sp|Q5K9X6|ATG3_CRYNE Autophagy-related protein 3 (Autophagy... 89 3e-18
sp|Q755K1|ATG3_ASHGO Autophagy-related protein 3 (Autophagy... 87 2e-17
>sp|Q6PFS7|APG3L_BRARE Autophagy protein 3-like (APG3-like)
Length = 317
Score = 172 bits (437), Expect = 2e-43
Identities = 85/112 (75%), Positives = 93/112 (83%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITYDK YQT RLWL GYDEDR LT +QM+ED SQDHVKKTVT+E HP+LP M SVH
Sbjct: 207 ITYDKYYQTPRLWLFGYDEDRQPLTVDQMYEDISQDHVKKTVTIENHPNLPPPA-MCSVH 265
Query: 181 PCRQAEVMKKLIEAVAEGGAVLGVHQYIVIFLKFVQAVIPTIEYDYTRNFNM 336
PCR AEVMKK+IE VAEGG LGVH Y++IFLKFVQAVIPTIEYDYTR+F M
Sbjct: 266 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 317
>sp|Q9NT62|APG3L_HUMAN Autophagy protein 3-like (APG3-like) (hApg3) (PC3-96 protein)
Length = 314
Score = 171 bits (434), Expect = 4e-43
Identities = 85/112 (75%), Positives = 91/112 (81%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITYDK YQT RLWL GYDE R LT E M+ED SQDHVKKTVT+E HPHLP M SVH
Sbjct: 204 ITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPP-MCSVH 262
Query: 181 PCRQAEVMKKLIEAVAEGGAVLGVHQYIVIFLKFVQAVIPTIEYDYTRNFNM 336
PCR AEVMKK+IE VAEGG LGVH Y++IFLKFVQAVIPTIEYDYTR+F M
Sbjct: 263 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 314
>sp|Q9CPX6|APG3L_MOUSE Autophagy protein 3-like (APG3-like)
Length = 314
Score = 171 bits (434), Expect = 4e-43
Identities = 85/112 (75%), Positives = 91/112 (81%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITYDK YQT RLWL GYDE R LT E M+ED SQDHVKKTVT+E HPHLP M SVH
Sbjct: 204 ITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPP-MCSVH 262
Query: 181 PCRQAEVMKKLIEAVAEGGAVLGVHQYIVIFLKFVQAVIPTIEYDYTRNFNM 336
PCR AEVMKK+IE VAEGG LGVH Y++IFLKFVQAVIPTIEYDYTR+F M
Sbjct: 263 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 314
>sp|Q6AZ50|APG3L_RAT Autophagy protein 3-like (APG3-like) (Preconditioning-inducible
gene 1 protein)
Length = 314
Score = 171 bits (434), Expect = 4e-43
Identities = 85/112 (75%), Positives = 91/112 (81%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITYDK YQT RLWL GYDE R LT E M+ED SQDHVKKTVT+E HPHLP M SVH
Sbjct: 204 ITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPP-MCSVH 262
Query: 181 PCRQAEVMKKLIEAVAEGGAVLGVHQYIVIFLKFVQAVIPTIEYDYTRNFNM 336
PCR AEVMKK+IE VAEGG LGVH Y++IFLKFVQAVIPTIEYDYTR+F M
Sbjct: 263 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 314
>sp|Q5I0S6|APG3L_XENTR Autophagy protein 3-like (APG3-like)
Length = 312
Score = 171 bits (433), Expect = 6e-43
Identities = 85/112 (75%), Positives = 91/112 (81%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITYDK YQT RLWL GYDE R LT E M+ED SQDHVKKTVT+E HPHLP M SVH
Sbjct: 202 ITYDKYYQTPRLWLFGYDEQRRPLTVENMYEDISQDHVKKTVTIENHPHLPPPP-MCSVH 260
Query: 181 PCRQAEVMKKLIEAVAEGGAVLGVHQYIVIFLKFVQAVIPTIEYDYTRNFNM 336
PCR AEVMKK+IE VAEGG LGVH Y++IFLKFVQAVIPTIEYDYTR+F M
Sbjct: 261 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 312
>sp|Q6GQE7|APG3L_XENLA Autophagy protein 3-like (APG3-like)
Length = 313
Score = 169 bits (428), Expect = 2e-42
Identities = 84/112 (75%), Positives = 90/112 (80%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITYDK YQT RLWL GYDE R L E M+ED SQDHVKKTVT+E HPHLP M SVH
Sbjct: 203 ITYDKYYQTPRLWLFGYDEQRRPLAVENMYEDISQDHVKKTVTIENHPHLPPPP-MCSVH 261
Query: 181 PCRQAEVMKKLIEAVAEGGAVLGVHQYIVIFLKFVQAVIPTIEYDYTRNFNM 336
PCR AEVMKK+IE VAEGG LGVH Y++IFLKFVQAVIPTIEYDYTR+F M
Sbjct: 262 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 313
>sp|O43035|ATG3_SCHPO Autophagy-related protein 3 (Autophagy-related E2-like conjugation
enzyme atg3)
Length = 275
Score = 101 bits (251), Expect = 7e-22
Identities = 52/107 (48%), Positives = 68/107 (63%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
I YDK Y+T RL+L G++ LLT + ++ED S +H KTVTME PH MASVH
Sbjct: 166 IVYDKYYRTPRLFLRGWNAGGQLLTMKDIYEDVSGEHAGKTVTMEPFPHYHSHNTMASVH 225
Query: 181 PCRQAEVMKKLIEAVAEGGAVLGVHQYIVIFLKFVQAVIPTIEYDYT 321
PC+ A V+ KLI+ E + V QY+V+FLKFV ++P E DYT
Sbjct: 226 PCKHASVLLKLIKQHRERNDPIRVDQYMVLFLKFVSTMLPYFEIDYT 272
>sp|Q6CL19|ATG3_KLULA Autophagy-related protein 3 (Autophagy-related E2-like conjugation
enzyme ATG3)
Length = 302
Score = 95.1 bits (235), Expect = 5e-20
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 23/130 (17%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITY Y+ +++LCGYD D + L+ +QMFED + D+ KT T+E P L G + S+H
Sbjct: 169 ITYSTSYRVPKMYLCGYDNDGTPLSPDQMFEDIAADYRSKTATIEPLPFLKGNNISVSIH 228
Query: 181 PCRQAEVMKKLIEAVAEGGAV-----------------------LGVHQYIVIFLKFVQA 291
PC+ A VMK L+E V + L V QY+V+FLKF+ +
Sbjct: 229 PCKHANVMKVLMEKVRSSRSRARKVDPQTTDEDWEDLQSDVDDGLRVDQYLVVFLKFITS 288
Query: 292 VIPTIEYDYT 321
V P IE+DYT
Sbjct: 289 VTPGIEHDYT 298
>sp|Q5K9X6|ATG3_CRYNE Autophagy-related protein 3 (Autophagy-related E2-like conjugation
enzyme ATG3)
Length = 385
Score = 89.4 bits (220), Expect = 3e-18
Identities = 58/165 (35%), Positives = 75/165 (45%), Gaps = 58/165 (35%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
I+YDK YQT R WL GYDE ++ LT Q+F+D DH KT+TME PH G +ASVH
Sbjct: 218 ISYDKHYQTPRFWLFGYDEHKNPLTPAQVFQDVPADHAFKTMTMESFPH--SGAQLASVH 275
Query: 181 PCRQAEVMKKLIEAV--------------------------------------------- 225
PC+ A VMKK I+ +
Sbjct: 276 PCKHASVMKKFIDRMEAAQGPAPTAEPETISSTSGTSGSAGGKEEKEKKKKWGLGSMVRK 335
Query: 226 AEGGAVLGVHQ-------------YIVIFLKFVQAVIPTIEYDYT 321
GG+V V + Y+VIFLKF+ +++PTIE D T
Sbjct: 336 VTGGSVPKVEKDKDEVVTGVPVDFYLVIFLKFIASIVPTIEVDST 380
>sp|Q755K1|ATG3_ASHGO Autophagy-related protein 3 (Autophagy-related E2-like conjugation
enzyme ATG3)
Length = 282
Score = 86.7 bits (213), Expect = 2e-17
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 24/131 (18%)
Frame = +1
Query: 1 ITYDKLYQTCRLWLCGYDEDRSLLTEEQMFEDFSQDHVKKTVTMEVHPHLPGGVLMASVH 180
ITY Y+ +++L G++ D + LT +QMF+D + D+ KT T+E P V+ S+H
Sbjct: 148 ITYSTSYRVPKMYLVGFNNDGTPLTPQQMFQDIAPDYRTKTATIEKLPFFKSAVVAVSIH 207
Query: 181 PCRQAEVMKKLIEAVA------------------------EGGAVLGVHQYIVIFLKFVQ 288
PCR A VM+ L+E V E + L V QY+V+FLKF+
Sbjct: 208 PCRHANVMRVLMEKVRAAKQKPVEEEQPDGpreDWEDLQDEVDSSLRVVQYLVVFLKFIT 267
Query: 289 AVIPTIEYDYT 321
+V P IE+DYT
Sbjct: 268 SVTPGIEHDYT 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,629,338
Number of Sequences: 369166
Number of extensions: 760528
Number of successful extensions: 1909
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1896
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)