Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L04-1
(415 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a 111 7e-25
sp|P04646|RL35A_RAT 60S ribosomal protein L35a >gi|51338600... 110 1e-24
sp|P61272|RL35A_MACFA 60S ribosomal protein L35a >gi|622874... 110 1e-24
sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a 109 2e-24
sp|P02434|RL35A_XENLA 60S ribosomal protein L35a (L32) 108 6e-24
sp|P51422|RL35A_ARATH 60S ribosomal protein L35a 87 1e-17
sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A (L37A) (Y... 80 2e-15
sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B (L37B) (Y... 78 6e-15
sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B (L37B) 76 2e-14
sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A (L37A) 75 5e-14
>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a
Length = 124
Score = 111 bits (277), Expect = 7e-25
Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Frame = -1
Query: 400 MSETKSVRKQVKPNV-RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXX 224
M++T R+ P RLYVKA+FTG++RGLR Q E+T+LL+++GV ++D FY
Sbjct: 1 MADTAVARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRV 60
Query: 223 XXXXXXXXXXXXXGFDEKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLY 44
G T+ R IWGK+ + HG +GAVRA+F+ N+P A+GKRIRV+LY
Sbjct: 61 VYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLY 120
Query: 43 PSRI 32
PS I
Sbjct: 121 PSNI 124
>sp|P04646|RL35A_RAT 60S ribosomal protein L35a
sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a
Length = 110
Score = 110 bits (275), Expect = 1e-24
Identities = 57/108 (52%), Positives = 72/108 (66%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RL+ KA+F GY+RGLRNQ E+TALL+I+GV + +T+FY G
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-G 62
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+ K R+IWGKV +AHG SG VRA+F NLP +A+G RIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P61272|RL35A_MACFA 60S ribosomal protein L35a
sp|Q5R8K6|RL35A_PONPY 60S ribosomal protein L35a
sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a
Length = 110
Score = 110 bits (274), Expect = 1e-24
Identities = 57/108 (52%), Positives = 72/108 (66%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RL+ KA+F GY+RGLRNQ E+TALL+I+GV + +T+FY G
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-G 62
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+ K R+IWGKV +AHG SG VRA+F NLP +A+G RIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a
Length = 110
Score = 109 bits (272), Expect = 2e-24
Identities = 55/108 (50%), Positives = 71/108 (65%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RL+ KA+F GY+RGLRNQ E+TALL+++GV + + DFY G
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPG-G 62
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+ K R+IWGKV +AHG SG VRA+F NLP +A+G RIRVMLYPSR+
Sbjct: 63 KPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a (L32)
Length = 110
Score = 108 bits (269), Expect = 6e-24
Identities = 56/108 (51%), Positives = 71/108 (65%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RL+ KA F GY+RGLRNQ E+TALL+I+GV + +T+FY G
Sbjct: 4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPG-G 62
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+ + R+IWGKV +AHG SG VRA+F NLP +A+G RIRVMLYPSRI
Sbjct: 63 KPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P51422|RL35A_ARATH 60S ribosomal protein L35a
Length = 111
Score = 87.4 bits (215), Expect = 1e-17
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Frame = -1
Query: 358 VRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGF 179
VRLYV+ GY+R NQ+ NT+L++I+GV Q++ ++Y +
Sbjct: 9 VRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYI-----------Y 57
Query: 178 DEKTK-----VRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
KTK R IWGKV + HG SG VR++F NLP ++MG R+RV +YPS I
Sbjct: 58 KAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A (L37A) (YL37) (RP47)
Length = 107
Score = 79.7 bits (195), Expect = 2e-15
Identities = 40/108 (37%), Positives = 55/108 (50%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RLYVK Y+R R + N +L++I+GV +D FY
Sbjct: 6 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRG---- 61
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+K+R++WGKV + HG SG VRA F NLP + G +R+ LYPS I
Sbjct: 62 --SKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B (L37B) (YL37) (RP47)
Length = 107
Score = 78.2 bits (191), Expect = 6e-15
Identities = 39/108 (36%), Positives = 55/108 (50%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RLYVK Y+R R + N +L++I+GV ++ FY
Sbjct: 6 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRG---- 61
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+K+R++WGKV + HG SG VRA F NLP + G +R+ LYPS I
Sbjct: 62 --SKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B (L37B)
Length = 108
Score = 76.3 bits (186), Expect = 2e-14
Identities = 39/108 (36%), Positives = 57/108 (52%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RLYVKA ++R H T++++I+G +++ FY
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRG---- 62
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+K+R+IWG + + HG SGAVRA+F NLP + G +RVMLYPS I
Sbjct: 63 --SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
>sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A (L37A)
Length = 108
Score = 75.1 bits (183), Expect = 5e-14
Identities = 39/108 (36%), Positives = 56/108 (51%)
Frame = -1
Query: 355 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTDFYXXXXXXXXXXXXXXXXXXGFD 176
RLYVKA ++R H T+L++I+G +++ FY
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRG---- 62
Query: 175 EKTKVRIIWGKVIKAHGRSGAVRAQFNKNLPGQAMGKRIRVMLYPSRI 32
+K+R+IWG V + HG SG VRA+F NLP + G +RVMLYPS +
Sbjct: 63 --SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,797,602
Number of Sequences: 369166
Number of extensions: 740718
Number of successful extensions: 1813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)