Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L02
(852 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04634|LIPG_RAT Gastric triacylglycerol lipase precursor... 241 1e-63
sp|P80035|LIPG_CANFA Gastric triacylglycerol lipase precurs... 240 3e-63
sp|P07098|LIPG_HUMAN Gastric triacylglycerol lipase precurs... 239 5e-63
sp|Q9CPP7|LIPG_MOUSE Gastric triacylglycerol lipase precurs... 238 2e-62
sp|Q29458|LIPG_BOVIN Gastric triacylglycerol lipase precurs... 235 1e-61
sp|P38571|LICH_HUMAN Lysosomal acid lipase/cholesteryl este... 228 2e-59
sp|Q9Z0M5|LICH_MOUSE Lysosomal acid lipase/cholesteryl este... 219 1e-56
sp|Q64194|LICH_RAT Lysosomal acid lipase/cholesteryl ester ... 218 2e-56
sp|O46107|LIP1_DROME Lipase 1 precursor (DmLip1) 186 7e-47
sp|O46108|LIP3_DROME Lipase 3 precursor (DmLip3) 177 4e-44
>sp|P04634|LIPG_RAT Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
(Lingual lipase)
Length = 395
Score = 241 bits (616), Expect = 1e-63
Identities = 123/280 (43%), Positives = 177/280 (63%), Gaps = 1/280 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
VV LQHGL+ SA W N P SLAF+LAD G+DVWL NSRGNT+S K+V + +FW
Sbjct: 78 VVYLQHGLIASATNWIANLPNNSLAFMLADAGYDVWLGNSRGNTWSRKNVYYSPDSVEFW 137
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FS+DEMA +DLPA +++ ++ +G K+ Y+GHSQGT I F FS + L KKI ++ A
Sbjct: 138 AFSFDEMAKYDLPATINFIVQKTGQ-EKIHYVGHSQGTTIGFIAFSTNPTLAKKIKTFYA 196
Query: 374 LAPAVFLGNVEAGLRILARFREDIETLLNLFGHGRVMSNSEIFKFLASTICGKEGLPKFC 553
LAP + ++ L+ ++ + L +FG + ++ FL + +C +E L C
Sbjct: 197 LAPVATVKYTQSPLKKISFIPTFLFKL--MFGKKMFLPHTYFDDFLGTEVCSREVLDLLC 254
Query: 554 SEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGIEG-NI 730
S +F+ G D KNLN SR VY+ H PAGTSV + +H+AQ V +G FQ +++G N+
Sbjct: 255 SNTLFIFCGFDKKNLNVSRFDVYLGHNPAGTSVQDFLHWAQLVRSGKFQAFNWGSPSQNM 314
Query: 731 KRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
Y PP++DV + +P A+++GGND LADP+DV+ LL
Sbjct: 315 LHYNQKTPPEYDVSAMTVPVAVWNGGNDILADPQDVAMLL 354
>sp|P80035|LIPG_CANFA Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
Length = 398
Score = 240 bits (613), Expect = 3e-63
Identities = 126/280 (45%), Positives = 175/280 (62%), Gaps = 1/280 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
V LQHGLL SA W N P SLAFILAD G+DVWL NSRGNT++ +++ + +FW
Sbjct: 79 VAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFW 138
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FS+DEMA +DLPA +D+ LK +G KL Y+GHSQGT I F FS + L K+I ++ A
Sbjct: 139 AFSFDEMAKYDLPATIDFILKKTGQ-DKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYA 197
Query: 374 LAPAVFLGNVEAGLRILARFREDIETLLNLFGHGRVMSNSEIFKFLASTICGKEGLPKFC 553
LAP + E L L + L +FG+ + +FLA+ +C +E + C
Sbjct: 198 LAPVATVKYTETLLNKLMLVPSFLFKL--IFGNKIFYPHHFFDQFLATEVCSRETVDLLC 255
Query: 554 SEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGIE-GNI 730
S +F++ G D NLN SRL VY+SH PAGTSV N++H++Q+V +G FQ +D+G N+
Sbjct: 256 SNALFIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNM 315
Query: 731 KRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
Y PP +++ + +P A+++GGND LADP DV LL
Sbjct: 316 MHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLL 355
>sp|P07098|LIPG_HUMAN Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
Length = 398
Score = 239 bits (611), Expect = 5e-63
Identities = 126/281 (44%), Positives = 177/281 (62%), Gaps = 2/281 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
VV LQHGLL SA W N P SLAFILAD G+DVWL NSRGNT++ +++ + +FW
Sbjct: 79 VVFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFW 138
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FS+DEMA +DLPA +D+ +K +G +L Y+GHSQGT I F FS + L K+I ++ A
Sbjct: 139 AFSFDEMAKYDLPATIDFIVKKTGQ-KQLHYVGHSQGTTIGFIAFSTNPSLAKRIKTFYA 197
Query: 374 LAPAVFLGNVEAGLRILARFREDIETLLN-LFGHGRVMSNSEIFKFLASTICGKEGLPKF 550
LAP + V+ ++ + R ++L +FG ++ +FLA+ +C +E L
Sbjct: 198 LAP---VATVKYTKSLINKLRFVPQSLFKFIFGDKIFYPHNFFDQFLATEVCSREMLNLL 254
Query: 551 CSEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGIE-GN 727
CS +F++ G D KN N SRL VY+SH PAGTSV N+ H+ Q+V +G FQ YD+G N
Sbjct: 255 CSNALFIICGFDSKNFNTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDWGSPVQN 314
Query: 728 IKRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
Y PP ++V + +P A+++GG D LADP+DV LL
Sbjct: 315 RMHYDQSQPPYYNVTAMNVPIAVWNGGKDLLADPQDVGLLL 355
>sp|Q9CPP7|LIPG_MOUSE Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
Length = 395
Score = 238 bits (607), Expect = 2e-62
Identities = 122/280 (43%), Positives = 174/280 (62%), Gaps = 1/280 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
V LQHGL+ SA W N P SLAFILAD G+DVWL NSRGNT+S K+V + +FW
Sbjct: 78 VAYLQHGLIASATNWITNLPNNSLAFILADAGYDVWLGNSRGNTWSRKNVYYSPDSVEFW 137
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FS+DEMA +DLPA +D+ ++ +G K+ Y+GHSQGT I F FS + L KKI + A
Sbjct: 138 AFSFDEMAKYDLPATIDFIVQKTGQ-EKIHYVGHSQGTTIGFIAFSTNPALAKKIKRFYA 196
Query: 374 LAPAVFLGNVEAGLRILARFREDIETLLNLFGHGRVMSNSEIFKFLASTICGKEGLPKFC 553
LAP + E+ + ++ + + L +FG+ M ++ + +FL + +C +E L C
Sbjct: 197 LAPVATVKYTESPFKKISLIPKFL--LKVIFGNKMFMPHNYLDQFLGTEVCSRELLDLLC 254
Query: 554 SEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGIE-GNI 730
S +F+ G D KNLN SR VY+ H PAGTS ++ H+AQ +G Q Y++G N+
Sbjct: 255 SNALFIFCGFDKKNLNVSRFDVYLGHNPAGTSTQDLFHWAQLAKSGKLQAYNWGSPLQNM 314
Query: 731 KRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
Y PP +DV + +P A+++GG+D LADP+DV+ LL
Sbjct: 315 LHYNQKTPPYYDVSAMTVPIAVWNGGHDILADPQDVAMLL 354
>sp|Q29458|LIPG_BOVIN Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
(Pregastric esterase) (PGE)
Length = 397
Score = 235 bits (600), Expect = 1e-61
Identities = 122/280 (43%), Positives = 171/280 (61%), Gaps = 1/280 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
VV LQHGLL SA W N P+ SL F+LAD G+DVWL NSRGNT++ +H+ + P+FW
Sbjct: 78 VVFLQHGLLGSATNWISNLPKNSLGFLLADAGYDVWLGNSRGNTWAQEHLYYSPDSPEFW 137
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FS+DEMA +DLP+ +D+ L+ +G KL Y+GHSQGT I F FS L +KI + A
Sbjct: 138 AFSFDEMAEYDLPSTIDFILRRTGQ-KKLHYVGHSQGTTIGFIAFSTSPTLAEKIKVFYA 196
Query: 374 LAPAVFLGNVEAGLRILARFREDIETLLNLFGHGRVMSNSEIFKFLASTICGKEGLPKFC 553
LAP + ++ LA + + +FG ++ + +FL +C +E L C
Sbjct: 197 LAPVATVKYTKSLFNKLALIPHFLFKI--IFGDKMFYPHTFLEQFLGVEMCSRETLDVLC 254
Query: 554 SEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGIE-GNI 730
+F + G D KN N SRL VYI+H PAGTSV N +H+ Q+V +G FQ +D+G N+
Sbjct: 255 KNALFAITGVDNKNFNMSRLDVYIAHNPAGTSVQNTLHWRQAVKSGKFQAFDWGAPYQNL 314
Query: 731 KRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
Y P PP +++ + +P A++S ND LADP+DV LL
Sbjct: 315 MHYHQPTPPIYNLTAMNVPIAVWSADNDLLADPQDVDFLL 354
>sp|P38571|LICH_HUMAN Lysosomal acid lipase/cholesteryl ester hydrolase precursor (LAL)
(Acid cholesteryl ester hydrolase) (Sterol esterase)
(Lipase A) (Cholesteryl esterase)
Length = 399
Score = 228 bits (581), Expect = 2e-59
Identities = 121/280 (43%), Positives = 171/280 (61%), Gaps = 1/280 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
VV LQHGLL + W N SL FILAD GFDVW+ NSRGNT+S KH +L+ +FW
Sbjct: 81 VVFLQHGLLADSSNWVTNLANSSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDEFW 140
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FS+DEMA +DLPA +++ L +G ++ Y+GHSQGT I F FSQ L K+I + A
Sbjct: 141 AFSYDEMAKYDLPASINFILNKTGQ-EQVYYVGHSQGTTIGFIAFSQIPELAKRIKMFFA 199
Query: 374 LAPAVFLGNVEAGLRILARFREDIETLLNLFGHGRVMSNSEIFKFLASTICGKEGLPKFC 553
L P + + + L R + + + +LFG + S K+L + +C L + C
Sbjct: 200 LGPVASVAFCTSPMAKLGRLPDHL--IKDLFGDKEFLPQSAFLKWLGTHVCTHVILKELC 257
Query: 554 SEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGIEG-NI 730
+ FLL G + +NLN SR+ VY +H+PAGTSV N++H++Q+V FQ +D+G N
Sbjct: 258 GNLCFLLCGFNERNLNMSRVDVYTTHSPAGTSVQNMLHWSQAVKFQKFQAFDWGSSAKNY 317
Query: 731 KRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
Y PP ++VK + +PTA++SGG+D LAD DV+ LL
Sbjct: 318 FHYNQSYPPTYNVKDMLVPTAVWSGGHDWLADVYDVNILL 357
>sp|Q9Z0M5|LICH_MOUSE Lysosomal acid lipase/cholesteryl ester hydrolase precursor (LAL)
(Acid cholesteryl ester hydrolase) (Sterol esterase)
(Lipase A) (Cholesteryl esterase)
Length = 397
Score = 219 bits (557), Expect = 1e-56
Identities = 118/280 (42%), Positives = 166/280 (59%), Gaps = 1/280 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
VV LQHGLL + W N SL F+LAD GFDVW+ NSRGNT+S KH +L+ +FW
Sbjct: 79 VVYLQHGLLADSSNWVTNIDNSSLGFLLADRGFDVWMGNSRGNTWSLKHKTLSVSQDEFW 138
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FS+DEMA +DLPA ++Y L +G ++ Y+GHSQG I F FSQ L KKI ++
Sbjct: 139 AFSFDEMAKYDLPASINYILNKTGQ-EQIYYVGHSQGCTIGFIAFSQMPELAKKIKMFLV 197
Query: 374 LAPAVFLGNVEAGLRILARFREDIETLLNLFGHGRVMSNSEIFKFLASTICGKEGLPKFC 553
LAP + L L L R + + L ++FG + + S + K+L+ +C + + C
Sbjct: 198 LAPVLSLNFASGPLLQLGRLPDPL--LKDMFGQKQFLPQSAMLKWLSIHVCTHVIMKELC 255
Query: 554 SEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFG-IEGNI 730
+ V FLL G + KNLN SR+ VY +H PA V N++H+ Q Q +D+G E N
Sbjct: 256 ANVFFLLCGFNEKNLNMSRVDVYTTHCPAELLVQNMLHWGQVFKYRKLQAFDWGSSEKNY 315
Query: 731 KRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
Y PP +++K + +PTA++SGG D LAD D++ LL
Sbjct: 316 FHYNQSFPPSYNIKNMRLPTALWSGGRDWLADINDITILL 355
>sp|Q64194|LICH_RAT Lysosomal acid lipase/cholesteryl ester hydrolase precursor (LAL)
(Acid cholesteryl ester hydrolase) (Sterol esterase)
(Lipase A) (Cholesteryl esterase)
Length = 397
Score = 218 bits (555), Expect = 2e-56
Identities = 120/282 (42%), Positives = 168/282 (59%), Gaps = 3/282 (1%)
Frame = +2
Query: 14 VVLLQ--HGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPK 187
VV LQ HG L + W N SL FILAD GFDVW+ NSRGNT+S KH +L+ +
Sbjct: 77 VVYLQWRHGFLADSSNWVTNIDNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDE 136
Query: 188 FWEFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSY 367
+W FS+DEMA +DLPA ++Y L +G +L +GHSQG I F FSQ L KK+ +
Sbjct: 137 YWAFSFDEMAKYDLPASINYILNKTGQ-EQLYNVGHSQGCTIGFIAFSQMPELAKKVKMF 195
Query: 368 VALAPAVFLGNVEAGLRILARFREDIETLLNLFGHGRVMSNSEIFKFLASTICGKEGLPK 547
ALAP + L + L R + + L +LFG + + S + K+L++ IC + +
Sbjct: 196 FALAPVLSLNFASGPMVKLGRLPDLL--LEDLFGQKQFLPQSAMVKWLSTHICTHVIMKE 253
Query: 548 FCSEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFG-IEG 724
C+ + FL+ G + KNLN SR+ VY +H PAGTSV N+VH+ Q V Q +D+G +
Sbjct: 254 LCANIFFLICGFNEKNLNMSRVDVYTTHCPAGTSVQNMVHWTQVVKYHKLQAFDWGSSDK 313
Query: 725 NIKRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRLL 850
N Y PP + +K + +PTA++SGG D LAD D++ LL
Sbjct: 314 NYFHYNQSYPPLYSIKDMQLPTALWSGGKDWLADTSDINILL 355
>sp|O46107|LIP1_DROME Lipase 1 precursor (DmLip1)
Length = 439
Score = 186 bits (472), Expect = 7e-47
Identities = 106/283 (37%), Positives = 149/283 (52%), Gaps = 2/283 (0%)
Frame = +2
Query: 5 GTRVVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDP 184
G LLQHGL+DS+ + + P SLA++LADH +DVWL N+RGN YS H +L+ +
Sbjct: 101 GAPPFLLQHGLVDSSAGFVVMGPNVSLAYLLADHNYDVWLGNARGNRYSRNHTTLDPDES 160
Query: 185 KFWEFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISS 364
KFW+FSW E+ +DLPA +D+ LK++G KL Y GHSQG F S K+ S
Sbjct: 161 KFWDFSWHEIGMYDLPAMIDHVLKVTG-FPKLHYAGHSQGCTSFFVMCSMRPAYNDKVVS 219
Query: 365 YVALAPAVFLGNVEAGLRILARFREDIETLLN-LFGHG-RVMSNSEIFKFLASTICGKEG 538
ALAPAV+ E I A I N L G R M N E F+FL E
Sbjct: 220 MQALAPAVYAKETEDHPYIRA-----ISLYFNSLVGSSIREMFNGE-FRFLCRM---TEE 270
Query: 539 LPKFCSEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGI 718
+ C E +F + G + N PV + H PAG + + H+ Q + +G F Y +
Sbjct: 271 TERLCIEAVFGIVGRNWNEFNRKMFPVILGHYPAGVAAKQVKHFIQIIKSGRFAPYSYSS 330
Query: 719 EGNIKRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRL 847
N++ Y PP++++ V +PT ++ ND L P+DV +
Sbjct: 331 NKNMQLYRDHLPPRYNLSLVTVPTFVYYSTNDLLCHPKDVESM 373
>sp|O46108|LIP3_DROME Lipase 3 precursor (DmLip3)
Length = 394
Score = 177 bits (448), Expect = 4e-44
Identities = 95/280 (33%), Positives = 149/280 (53%), Gaps = 2/280 (0%)
Frame = +2
Query: 14 VVLLQHGLLDSAHTWAINSPEQSLAFILADHGFDVWLANSRGNTYSNKHVSLNERDPKFW 193
V L HG+L S+ W + PE+SLA++LAD G+DVW+ N+RGNTYS H FW
Sbjct: 71 VAFLMHGMLSSSSDWVLMGPERSLAYMLADAGYDVWMGNARGNTYSKAHKYWPTYWQIFW 130
Query: 194 EFSWDEMASFDLPACVDYALKISGNATKLTYIGHSQGTEIAFAQFSQDVLLRKKISSYVA 373
FSW+E+ +D+PA +DY L +G ++ Y+GHSQGT + S+ KI S
Sbjct: 131 NFSWNEIGMYDVPAMIDYVLAKTGQ-QQVQYVGHSQGTTVYLVMVSERPEYNDKIKSAHL 189
Query: 374 LAPAVFLGNVEAGL-RILARFREDIETLLNLFGHGRVMSNSEIFKFLASTIC-GKEGLPK 547
L PA ++GN+++ L R A ++ + G M +++ + L +C
Sbjct: 190 LGPAAYMGNMKSPLTRAFAPILGQPNAIVEVCGSMEFMPSNKFKQDLGIEMCQATSPYAD 249
Query: 548 FCSEVIFLLAGHDIKNLNESRLPVYISHTPAGTSVMNIVHYAQSVDNGNFQMYDFGIEGN 727
C+ IFL+ G+D + L+ L + +PAG SV +H+ Q ++G F+ +D+ N
Sbjct: 250 MCANEIFLIGGYDTEQLDYELLEHIKATSPAGASVNQNLHFCQEYNSGKFRKFDYTALRN 309
Query: 728 IKRYGTPNPPQFDVKPVGIPTAIFSGGNDTLADPEDVSRL 847
YG+ PP + +K P ++ G ND + D DV +L
Sbjct: 310 PYEYGSYFPPDYKLKNAKAPVLLYYGANDWMCDVSDVRKL 349
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,054,790
Number of Sequences: 369166
Number of extensions: 2513398
Number of successful extensions: 6250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6218
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)