Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_K22
(310 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 97 9e-21
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 89 3e-18
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 86 3e-17
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 84 1e-16
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 83 2e-16
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 82 3e-16
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 82 4e-16
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 82 4e-16
sp|P34728|ARF_CRYNE ADP-ribosylation factor 80 1e-15
sp|O00909|ARF1_DICDI ADP-ribosylation factor 1 80 2e-15
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 97.4 bits (241), Expect = 9e-21
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 135
ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK
Sbjct: 139 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 183
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 89.0 bits (219), Expect = 3e-18
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 129
+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS LKNRS
Sbjct: 139 VTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 85.5 bits (210), Expect = 3e-17
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSK 132
ITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LKN ++
Sbjct: 139 ITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 83.6 bits (205), Expect = 1e-16
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 126
ITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LKN+
Sbjct: 139 ITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 82.8 bits (203), Expect = 2e-16
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 126
ITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LKN+
Sbjct: 139 ITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 82.4 bits (202), Expect = 3e-16
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 126
ITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LKN+
Sbjct: 139 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 82.0 bits (201), Expect = 4e-16
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 126
ITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 139 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 82.0 bits (201), Expect = 4e-16
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 126
ITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 139 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 80.5 bits (197), Expect = 1e-15
Identities = 36/43 (83%), Positives = 38/43 (88%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 129
ITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK +S
Sbjct: 139 ITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
>sp|O00909|ARF1_DICDI ADP-ribosylation factor 1
Length = 182
Score = 79.7 bits (195), Expect = 2e-15
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +1
Query: 1 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSK 132
+TDKL LHSLR+R WYIQ+TCATSGDGLYEGLDWLS TL + SK
Sbjct: 139 VTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSSK 182
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,528,139
Number of Sequences: 369166
Number of extensions: 515183
Number of successful extensions: 1255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)