Planarian EST Database


Dr_sW_008_K21

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_008_K21
         (602 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51469|G3P_XENLA  Glyceraldehyde-3-phosphate dehydrogenas...   228   7e-60
sp|P20287|G3P_SCHMA  Glyceraldehyde-3-phosphate dehydrogenas...   227   2e-59
sp|O57479|G3P_COLLI  Glyceraldehyde-3-phosphate dehydrogenas...   224   1e-58
sp|Q9N2D5|G3P_FELCA  Glyceraldehyde-3-phosphate dehydrogenas...   223   2e-58
sp|Q05025|G3P_COTJA  Glyceraldehyde-3-phosphate dehydrogenas...   223   3e-58
sp|Q28554|G3P_SHEEP  Glyceraldehyde-3-phosphate dehydrogenas...   222   5e-58
sp|P00356|G3P_CHICK  Glyceraldehyde-3-phosphate dehydrogenas...   221   1e-57
sp|P00355|G3P_PIG  Glyceraldehyde-3-phosphate dehydrogenase ...   221   1e-57
sp|P46406|G3P_RABIT  Glyceraldehyde-3-phosphate dehydrogenas...   220   2e-57
sp|P16858|G3P_MOUSE  Glyceraldehyde-3-phosphate dehydrogenas...   220   2e-57
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  228 bits (582), Expect = 7e-60
 Identities = 112/159 (70%), Positives = 129/159 (81%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA+TATQKTVDGPS KLWRDGRGA QNIIP            IPELNGKITGMAFRVP
Sbjct: 175 TVHAFTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+K AKYD+IKAAIK ASE  MKGIL YT+++VVS DF GD +SSIFD
Sbjct: 235 TPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L + FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 295 ADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
           surface antigen) (P-37)
          Length = 338

 Score =  227 bits (579), Expect = 2e-59
 Identities = 110/160 (68%), Positives = 125/160 (78%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+H++TATQK VDGPSSKLWRDGRGA QNIIP            IP LNGK+TGMAFRVP
Sbjct: 178 TVHSFTATQKVVDGPSSKLWRDGRGAMQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVP 237

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            PDVSVVDLTC+L K A Y+EIKAA+K A+   +KGIL YTE+EVVS DF G  +SSIFD
Sbjct: 238 TPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFD 297

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKDH 496
           AKAGI L + FVKLV+WYDNE+GYSCRV+DLI HM   DH
Sbjct: 298 AKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHKVDH 337
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  224 bits (571), Expect = 1e-58
 Identities = 109/159 (68%), Positives = 128/159 (80%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+K AKYD+IK  +K A++  +KGILAYTE++VVS DF GD +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  223 bits (569), Expect = 2e-58
 Identities = 108/159 (67%), Positives = 127/159 (79%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+KAAKYD+IK  +K ASE  +KGIL YTE++VVS DF  D +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  223 bits (568), Expect = 3e-58
 Identities = 108/159 (67%), Positives = 127/159 (79%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+K AKYD+IK  +K A+E  +KGIL YTE++VVS DF GD +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 322

 Score =  222 bits (566), Expect = 5e-58
 Identities = 108/159 (67%), Positives = 126/159 (79%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 164 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 223

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+K AKYDEIK  +K ASE  +KGIL YTE++VVS DF  D +SS FD
Sbjct: 224 TPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 283

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 284 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  221 bits (563), Expect = 1e-57
 Identities = 107/159 (67%), Positives = 127/159 (79%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+K AKYD+IK  +K A++  +KGIL YTE++VVS DF GD +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  221 bits (563), Expect = 1e-57
 Identities = 107/159 (67%), Positives = 126/159 (79%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+K AKYD+IK  +K ASE  +KGIL YTE++VVS DF  D +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  220 bits (560), Expect = 2e-57
 Identities = 107/159 (67%), Positives = 126/159 (79%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+KAAKYD+IK  +K ASE  +KGIL YTE++VVS DF    +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  220 bits (560), Expect = 2e-57
 Identities = 106/159 (66%), Positives = 126/159 (79%)
 Frame = +2

Query: 17  TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 196
           T+HA TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234

Query: 197 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 376
            P+VSVVDLTC+L+K AKYD+IK  +K ASE  +KGIL YTE++VVS DF  + +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFD 294

Query: 377 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 493
           A AGI L D FVKL++WYDNEYGYS RV+DL+ +M++K+
Sbjct: 295 AGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,440,120
Number of Sequences: 369166
Number of extensions: 1201695
Number of successful extensions: 3302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3192
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)