Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_K09
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06761|GRP78_RAT 78 kDa glucose-regulated protein precur... 79 2e-15
sp|P11021|GRP78_HUMAN 78 kDa glucose-regulated protein prec... 77 2e-14
sp|P07823|GRP78_MESAU 78 kDa glucose-regulated protein prec... 77 2e-14
sp|P20029|GRP78_MOUSE 78 kDa glucose-regulated protein prec... 76 2e-14
sp|Q90593|GRP78_CHICK 78 kDa glucose-regulated protein prec... 76 2e-14
sp|Q91883|GRP78_XENLA 78 kDa glucose-regulated protein prec... 76 3e-14
sp|Q16956|GRP78_APLCA 78 kDa glucose-regulated protein prec... 75 5e-14
sp|P27420|HSP7C_CAEEL Heat shock 70 kDa protein C precursor 72 3e-13
sp|P19208|HSP7C_CAEBR Heat shock 70 kDa protein C precursor 70 1e-12
sp|P20163|HSP7D_CAEEL Heat shock 70 kDa protein D precursor 67 1e-11
>sp|P06761|GRP78_RAT 78 kDa glucose-regulated protein precursor (GRP 78) (Immunoglobulin
heavy chain binding protein) (BiP)
(Steroidogenesis-activator polypeptide)
Length = 654
Score = 79.3 bits (194), Expect = 2e-15
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKLSP DKET+ KA EE I WLE +Q AD E+ KA+KK++E+IV PI++KLY G
Sbjct: 581 KLGGKLSPEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSGG 639
>sp|P11021|GRP78_HUMAN 78 kDa glucose-regulated protein precursor (GRP 78) (Immunoglobulin
heavy chain binding protein) (BiP) (Endoplasmic
reticulum lumenal Ca(2+) binding protein grp78)
Length = 654
Score = 76.6 bits (187), Expect = 2e-14
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKLS DKET+ KA EE I WLE +Q AD E+ KA+KK++E+IV PI++KLY +G
Sbjct: 581 KLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAG 639
>sp|P07823|GRP78_MESAU 78 kDa glucose-regulated protein precursor (GRP 78) (Immunoglobulin
heavy chain binding protein) (BiP)
Length = 654
Score = 76.6 bits (187), Expect = 2e-14
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKLS DKET+ KA EE I WLE +Q AD E+ KA+KK++E+IV PI++KLY +G
Sbjct: 581 KLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAG 639
>sp|P20029|GRP78_MOUSE 78 kDa glucose-regulated protein precursor (GRP 78) (Immunoglobulin
heavy chain binding protein) (BiP)
Length = 655
Score = 76.3 bits (186), Expect = 2e-14
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKLS DKET+ KA EE I WLE +Q AD E+ KA+KK++E+IV PI++KLY G
Sbjct: 582 KLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSGG 640
>sp|Q90593|GRP78_CHICK 78 kDa glucose-regulated protein precursor (GRP 78) (Immunoglobulin
heavy chain binding protein) (BiP)
Length = 652
Score = 76.3 bits (186), Expect = 2e-14
Identities = 35/59 (59%), Positives = 46/59 (77%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKLS DKETI KA EE I WLE +Q AD E+ K++KK++E++V PI++KLY +G
Sbjct: 579 KLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKSKKKELEEVVQPIVSKLYGSAG 637
>sp|Q91883|GRP78_XENLA 78 kDa glucose-regulated protein precursor (GRP 78) (Immunoglobulin
heavy chain binding protein) (BiP)
Length = 658
Score = 75.9 bits (185), Expect = 3e-14
Identities = 37/59 (62%), Positives = 45/59 (76%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKLS DKETI KA EE I WLE +Q AD E+ KA+KK++E+IV PI+ KLY +G
Sbjct: 582 KLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIVGKLYGGAG 640
>sp|Q16956|GRP78_APLCA 78 kDa glucose-regulated protein precursor (GRP 78) (BiP) (Protein
1603)
Length = 667
Score = 75.1 bits (183), Expect = 5e-14
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLG KLS DKE IT+A +EAI WLE N +A+SE +K ++E IV PIMTKLY+QSG
Sbjct: 590 KLGAKLSDEDKEKITEAVDEAIKWLESNAEAESEAFNEKKTELEGIVQPIMTKLYEQSG 648
>sp|P27420|HSP7C_CAEEL Heat shock 70 kDa protein C precursor
Length = 661
Score = 72.4 bits (176), Expect = 3e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKL DK+TI +A EEAISWL N +A +EELK QKK +E V PI++KLY+ +G
Sbjct: 586 KLGGKLDEDDKKTIEEAVEEAISWLGSNAEASAEELKEQKKDLESKVQPIVSKLYKDAG 644
>sp|P19208|HSP7C_CAEBR Heat shock 70 kDa protein C precursor
Length = 661
Score = 70.5 bits (171), Expect = 1e-12
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKL DK+TI +A +EAISWL N A +EELK QKK++E V PI++KLY+ G
Sbjct: 586 KLGGKLDEDDKKTIEEAVDEAISWLGSNADASAEELKEQKKELEGKVQPIVSKLYKDGG 644
>sp|P20163|HSP7D_CAEEL Heat shock 70 kDa protein D precursor
Length = 657
Score = 67.0 bits (162), Expect = 1e-11
Identities = 32/59 (54%), Positives = 40/59 (67%)
Frame = +3
Query: 3 KLGGKLSPSDKETITKATEEAISWLEKNQQADSEELKAQKKKVEDIVTPIMTKLYQQSG 179
KLGGKL+ DK +I A E AI WL NQ A +EE K QKK++E +V PI++KLY G
Sbjct: 583 KLGGKLTDEDKVSIESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLYSAGG 641
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,821,048
Number of Sequences: 369166
Number of extensions: 379800
Number of successful extensions: 1729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)