Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J16
(791 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subuni... 294 2e-79
sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subun... 294 2e-79
sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subun... 293 3e-79
sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subun... 293 3e-79
sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subun... 293 3e-79
sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit... 293 4e-79
sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subun... 293 4e-79
sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subun... 291 1e-78
sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subuni... 289 7e-78
sp|Q39291|VATA_BRANA Vacuolar ATP synthase catalytic subuni... 278 9e-75
>sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 617
Score = 294 bits (753), Expect = 2e-79
Identities = 145/159 (91%), Positives = 154/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 321 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 380
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G PD R+GSV+IVGAVSPPGGDFSDPVT+ATLGIVQVFWGLDKKL
Sbjct: 381 RLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPGGDFSDPVTAATLGIVQVFWGLDKKL 439
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPSINWLIS+SKY RALDDFY+K+Y EFV LRTK
Sbjct: 440 AQRKHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTK 478
Score = 168 bits (426), Expect = 1e-41
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YSSYD+FCPFYKTVGML
Sbjct: 482 ILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGML 541
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
KN+I FYD +RHAVE+T+QSD+K+TW++IR+AM + +Y++S
Sbjct: 542 KNIISFYDMSRHAVESTAQSDNKVTWNVIRDAMGNVLYQLS 582
>sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subunit A, osteoclast isoform
(V-ATPase A subunit 2) (Vacuolar proton pump alpha
subunit 2) (V-ATPase 69 kDa subunit 2) (Isoform HO68)
Length = 615
Score = 294 bits (753), Expect = 2e-79
Identities = 145/159 (91%), Positives = 154/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 319 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 378
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G PD R+GSV+IVGAVSPPGGDFSDPVT+ATLGIVQVFWGLDKKL
Sbjct: 379 RLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPGGDFSDPVTTATLGIVQVFWGLDKKL 437
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPSINWLIS+SKY RALDDFYDK++ EFV LRTK
Sbjct: 438 AQRKHFPSINWLISYSKYMRALDDFYDKNFPEFVPLRTK 476
Score = 165 bits (417), Expect = 1e-40
Identities = 77/101 (76%), Positives = 94/101 (93%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YS YD+FCPFYKTVGML
Sbjct: 480 ILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGML 539
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
KNMI FYD +RHAVE+T+QS++KITW++IR++M + +Y++S
Sbjct: 540 KNMIAFYDMSRHAVESTAQSENKITWNVIRDSMGNILYQLS 580
>sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1) (Isoform VA68)
Length = 617
Score = 293 bits (751), Expect = 3e-79
Identities = 143/159 (89%), Positives = 154/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 321 AAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 380
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL
Sbjct: 381 RLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 439
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK
Sbjct: 440 AQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTK 478
Score = 169 bits (429), Expect = 6e-42
Identities = 82/101 (81%), Positives = 92/101 (91%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEEEDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML
Sbjct: 482 ILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGML 541
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
NMI FYD AR AVETT+QSD+KITWS+IRE M D +YK+S
Sbjct: 542 SNMIAFYDMARRAVETTAQSDNKITWSIIREHMGDILYKLS 582
>sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 293 bits (751), Expect = 3e-79
Identities = 143/159 (89%), Positives = 154/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 321 AAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 380
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL
Sbjct: 381 RLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 439
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK
Sbjct: 440 AQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTK 478
Score = 166 bits (419), Expect = 9e-41
Identities = 80/101 (79%), Positives = 91/101 (90%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEE DL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML
Sbjct: 482 ILQEEGDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGML 541
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
NMI FYD AR AVETT+QSD+KITWS+IRE M + +YK+S
Sbjct: 542 SNMISFYDMARRAVETTAQSDNKITWSIIREHMGEILYKLS 582
>sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 293 bits (751), Expect = 3e-79
Identities = 143/159 (89%), Positives = 154/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 321 AAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 380
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL
Sbjct: 381 RLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 439
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK
Sbjct: 440 AQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTK 478
Score = 168 bits (425), Expect = 2e-41
Identities = 81/101 (80%), Positives = 92/101 (91%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEEEDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML
Sbjct: 482 ILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGML 541
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
NMI FYD AR AVETT+QSD+KITWS+IRE M + +YK+S
Sbjct: 542 SNMIAFYDMARRAVETTAQSDNKITWSIIREHMGEILYKLS 582
>sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 293 bits (750), Expect = 4e-79
Identities = 143/159 (89%), Positives = 154/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGY+VSMMA+STSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 321 AAREASIYTGITLSEYFRDMGYHVSMMANSTSRWAEALREISGRLAEMPADSGYPAYLGA 380
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G P ER+GSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL
Sbjct: 381 RLASFYERAGRVKCLGNP-EREGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 439
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK
Sbjct: 440 AQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTK 478
Score = 167 bits (423), Expect = 3e-41
Identities = 81/101 (80%), Positives = 92/101 (91%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEEEDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML
Sbjct: 482 ILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGML 541
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
NMI FYD AR AVETT+QSD+KITWS+IRE M + +YK+S
Sbjct: 542 SNMIAFYDLARRAVETTAQSDNKITWSIIREHMGEILYKLS 582
>sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subunit A isoform 2 (V-ATPase A
subunit 2) (Vacuolar proton pump alpha subunit 2)
(V-ATPase 69 kDa subunit 2)
Length = 614
Score = 293 bits (750), Expect = 4e-79
Identities = 145/159 (91%), Positives = 153/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMP +SGYPAYLGA
Sbjct: 318 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPRDSGYPAYLGA 377
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL
Sbjct: 378 RLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 436
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPSINWLIS+SKY RALDDFYDK++ EFV LRTK
Sbjct: 437 AQRKHFPSINWLISYSKYMRALDDFYDKNFPEFVPLRTK 475
Score = 166 bits (421), Expect = 5e-41
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YSSYD+FCPFYKTVGML
Sbjct: 479 ILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGML 538
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
+N+I FYD ARH+VE+T+QS++KITW++IREAM + +Y++S
Sbjct: 539 RNIIDFYDMARHSVESTAQSENKITWNVIREAMGNIMYQLS 579
>sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subunit A isoform 1 (V-ATPase A
subunit 1) (Vacuolar proton pump alpha subunit 1)
(V-ATPase 69 kDa subunit 1)
Length = 614
Score = 291 bits (746), Expect = 1e-78
Identities = 143/159 (89%), Positives = 154/159 (96%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGYNV+MMADSTSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 318 AAREASIYTGITLSEYFRDMGYNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 377
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLA+FYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL
Sbjct: 378 RLATFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 436
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPSINWLIS+SKY RALD++YDK+Y EFV LRTK
Sbjct: 437 AQRKHFPSINWLISYSKYMRALDEYYDKNYPEFVPLRTK 475
Score = 158 bits (399), Expect = 2e-38
Identities = 74/101 (73%), Positives = 91/101 (90%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
ILQEEEDLSEIVQLVGK SLAE+DK+TLEVA+L+KDDFLQQN YS YD+ CPFYKTVGML
Sbjct: 479 ILQEEEDLSEIVQLVGKASLAETDKVTLEVAKLLKDDFLQQNSYSPYDRVCPFYKTVGML 538
Query: 668 KNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
+N++ FY+ ARHAVE+T+QSD+KITW+ IRE+M +Y++S
Sbjct: 539 RNIMAFYETARHAVESTAQSDNKITWNTIRESMGGIMYQLS 579
>sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 615
Score = 289 bits (739), Expect = 7e-78
Identities = 142/154 (92%), Positives = 150/154 (97%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA+SGYPAYLGA
Sbjct: 319 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 378
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL
Sbjct: 379 RLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 437
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFV 462
AQRKHFPSINWLIS+SKY RALDDFYDK++ EFV
Sbjct: 438 AQRKHFPSINWLISYSKYMRALDDFYDKNFQEFV 471
Score = 162 bits (411), Expect = 7e-40
Identities = 78/102 (76%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVG-M 664
ILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YS+YD+FCPFYKTVG M
Sbjct: 480 ILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSAYDRFCPFYKTVGRM 539
Query: 665 LKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKIS 790
L+NMI FYD ARHAVETT+QS++KITW++IR++M + +Y++S
Sbjct: 540 LRNMIGFYDMARHAVETTAQSENKITWNVIRDSMGNILYQLS 581
>sp|Q39291|VATA_BRANA Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit) (Tonoplast ATPase 70 kDa subunit) (BN59)
Length = 623
Score = 278 bits (712), Expect = 9e-75
Identities = 135/159 (84%), Positives = 150/159 (94%)
Frame = +1
Query: 1 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAESGYPAYLGA 180
AAREASIYTGIT++EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA+SGYPAYL A
Sbjct: 324 AAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAA 383
Query: 181 RLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 360
RLASFYERAG+V+C+GGP ER GSVTIVGAVSPPGGDFSDPVTSATL IVQVFWGLDKKL
Sbjct: 384 RLASFYERAGKVKCLGGP-ERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKL 442
Query: 361 AQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTK 477
AQRKHFPS+NWLIS+SKY+ AL+ FY+K ++F+ +RTK
Sbjct: 443 AQRKHFPSVNWLISYSKYSTALESFYEKFDSDFIDIRTK 481
Score = 119 bits (299), Expect = 7e-27
Identities = 55/101 (54%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
Frame = +2
Query: 488 ILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGML 667
+LQ E+DL+EIVQLVGK +LAE DKITLE A+L+++D+L QN ++ YDKFCPFYK+V M+
Sbjct: 485 VLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMM 544
Query: 668 KNMIHFYDQARHAVETTSQSD-SKITWSMIREAMNDTIYKI 787
+N+IHFY+ A AVE + D KI++S+I+ + D Y++
Sbjct: 545 RNIIHFYNLANQAVERGAGMDGQKISYSLIKHRLGDLFYRL 585
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,016,592
Number of Sequences: 369166
Number of extensions: 2303243
Number of successful extensions: 7743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7332
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)