Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J15
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34244|KKK1_YEAST Probable serine/threonine-protein kina... 34 0.46
sp|P22114|TATR_NPVOP Trans-activating transcriptional regul... 34 0.60
sp|P38283|SLI15_YEAST Inner centromere protein (INCENP)-rel... 33 0.78
sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family membe... 33 1.3
sp|Q8K9K5|FLGF_BUCAP Flagellar basal-body rod protein flgF 32 1.7
sp|P08045|XFIN_XENLA Zinc finger protein Xfin 32 2.3
sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 32 3.0
sp|P38970|HAL5_YEAST Serine/threonine-protein kinase HAL5 (... 32 3.0
sp|Q9BX84|TRPM6_HUMAN Transient receptor potential cation c... 31 3.9
sp|P41910|MAF1_YEAST Repressor of RNA polymerase III transc... 31 3.9
>sp|P34244|KKK1_YEAST Probable serine/threonine-protein kinase YKL101W
Length = 1518
Score = 34.3 bits (77), Expect = 0.46
Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 15/223 (6%)
Frame = +1
Query: 31 ETPSNIRLNISTSTLNKEVNANI---ENEMKKETFSKNEDDNVHW--MTWKDSTPFFTKK 195
E S + N + + +N E+NA + +++ T S+ E D +T + P F
Sbjct: 517 EDTSTVNQNNAITGVNTEINAPVLAQKSQFSINTLSQPESDKAEAEAVTLPPAIPIFNAS 576
Query: 196 SDLKTYRVQTAQNSSSREHKCSTPFARPNTSHVTSNNRFSYSGTKENEVI--GKELLIQN 369
S T+ +S SR S SN+R S S + E + + L Q
Sbjct: 577 SSRIFRNSYTSISSRSRR------------SLRLSNSRLSLSASTSRETVHDNEMPLPQL 624
Query: 370 YRPCSRDSLRRFRCRSAEHFAKPSQKTTSIAVGPDKHFDTIAT--------NTQQSYQIS 525
+ SR SL R A H A PS K+ ++ T+A + + Y +
Sbjct: 625 PKSPSRYSLSR----RAIH-ASPSTKSIHKSLSRKNIAATVAARRTLQNSASKRSLYSLQ 679
Query: 526 DYLKKSMNLNDPYERKIFSSVMEVLRKKNRNPNSIDTESIAVD 654
K+S+NLND +F + + + N N + S+ D
Sbjct: 680 SISKRSLNLND---LLVFDDPLPSKKPASENVNKSEPHSLESD 719
>sp|P22114|TATR_NPVOP Trans-activating transcriptional regulatory protein (Immediate
early protein 1) (IE-1)
Length = 560
Score = 33.9 bits (76), Expect = 0.60
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +1
Query: 535 KKSMNLNDPYE----RKIFSSVMEVLRKKNRNPNSIDTESIAVDPVLQLSEYKSKFRNPQ 702
K +M LN Y+ R +F+ + + RK+ N N+ ++ A V Q+ +Y R PQ
Sbjct: 327 KTNMLLNKLYQMYQDRSLFTLPIMLSRKEPVNENAPQNKNHAFSYVAQIMKYSKNLRFPQ 386
Query: 703 NKSVAFPTSKTENIVTVKQPL 765
+ E IVT K L
Sbjct: 387 GDPTQQVMDRLEEIVTQKSSL 407
>sp|P38283|SLI15_YEAST Inner centromere protein (INCENP)-related protein SLI15
Length = 698
Score = 33.5 bits (75), Expect = 0.78
Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)
Frame = +1
Query: 160 TWKDSTPFFTKKSDLKTYRVQTAQNS-SSREHKCSTPF---------------ARPNTSH 291
T K+S F KKS + + ++ +NS ++ K S+ F +R N H
Sbjct: 264 TVKESPIAFKKKSTINSPAIRAVENSDTAGSTKASSVFDRLSSIPTKSFENKISRGNVGH 323
Query: 292 VTSNNRFSYSGTKENEVIGKELLIQNYRPCSRDSLRRFRCRSAEHFAKPSQKTTSIAVGP 471
S++ +G+ +V K I + +++LR + S K +
Sbjct: 324 KYSSSSIDLTGSPMKKVSQKFKSINSTDTDMQEALRDIFSVKNKITKNNSPKGKNSRKSS 383
Query: 472 DKHFDTIA---TNTQQSYQISDYLKKSMNLNDPYERKIFSSVMEVLRKKNRNPNSIDTES 642
FD + T ++ I++ KKS + +D + K P+SI
Sbjct: 384 IPRFDKTSLKLTTHKKLAIIAEQKKKSKHSSD-------------VHKTGSRPHSISPTK 430
Query: 643 IAVDPVLQLSEYKSKFRNP-----QNKSVAFPTSKTENIVTVKQPLVCLHKTRPLGQLRP 807
I+VD E K+ +++P + + +K +N+ T + P K + L +L P
Sbjct: 431 ISVDSSSPSKEVKNYYQSPVRGYLRPTKASISPNKNKNLTTSQTPHRLKIKEKTLRKLSP 490
Query: 808 QSSTV 822
+ +
Sbjct: 491 NIADI 495
>sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25
Length = 572
Score = 32.7 bits (73), Expect = 1.3
Identities = 42/201 (20%), Positives = 76/201 (37%), Gaps = 15/201 (7%)
Frame = +1
Query: 268 FARPNTSHVTSNNRFSYSGTKENEVIGKELLIQN-YRPCSRD--SLRRFRCRSAEHFAKP 438
F + + +H N S + V+G + Q Y+P S + +F +
Sbjct: 103 FYKKDRAHRMQRNAMRVSTVQVPAVLGAQSQAQTFYQPPEHQVSSSTTDQNNQINYFDQT 162
Query: 439 SQKTTSIAVGPDKHFD--TIATNTQQSYQISDYLKKSMNLNDPYE--RKIFSSVMEVLRK 606
KT I D H T++++T Q +SD++ + L DP + + S ++
Sbjct: 163 KIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFIMRPGYLVDPQDSLAVLLGSTIDDPLL 222
Query: 607 KNRNPNSIDTESIAVDPVLQLSEYKSKFRNPQNKSVAFPTSKTENIVTV--------KQP 762
++ P + + +P +Y +F + TS T N T+ Q
Sbjct: 223 RHTFPAAYQLNEVKQEPF----DYSEQFIHHSLHDYPTYTSNTTNYATMMPMTTVSSTQS 278
Query: 763 LVCLHKTRPLGQLRPQSSTVP 825
LV + G++ SST P
Sbjct: 279 LVTSTSSTTTGRMTEASSTSP 299
>sp|Q8K9K5|FLGF_BUCAP Flagellar basal-body rod protein flgF
Length = 249
Score = 32.3 bits (72), Expect = 1.7
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +1
Query: 19 NHRLETPSNIRLNISTSTLNKEVNAN----IENEMKKETFSKNEDDNVHWMTWKDSTPFF 186
N ++ P+N+ L IS++ + KE+ N IE+ + + ++DN + K++ F+
Sbjct: 122 NGNIKIPNNVNLKISSNGIIKEIKKNKDSIIESTIGSLKLVRLQNDN---LIQKENGLFY 178
Query: 187 TKKSDLKTYR 216
KK +L Y+
Sbjct: 179 LKKDNLNKYK 188
>sp|P08045|XFIN_XENLA Zinc finger protein Xfin
Length = 1350
Score = 32.0 bits (71), Expect = 2.3
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Frame = +1
Query: 115 KETFSKNEDDNVHWMTWKDSTPF--------FTKKSDL-KTYRVQTAQNSSSREHKCS 261
K++FS+N D + HW PF FT++S L K +R T + R HKCS
Sbjct: 565 KKSFSQNSDLHKHWRIHTGEKPFPCYTCDKSFTERSALIKHHRTHTGE----RPHKCS 618
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1
Length = 291
Score = 31.6 bits (70), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 759 LFNCNNIFCFRCRKSY*FILWISK 688
L+NCNN+ F RK LW+SK
Sbjct: 80 LYNCNNVLFFEARKHQDLYLWLSK 103
>sp|P38970|HAL5_YEAST Serine/threonine-protein kinase HAL5 (Halotolerence protein 5)
Length = 855
Score = 31.6 bits (70), Expect = 3.0
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 10 APENHRLETPSNIRLNISTSTLNKEVNANIENEM-KKETFSKNEDDN 147
AP++H+L P+ +L++S S +E + N ENEM +E+F +D++
Sbjct: 78 APKHHKLGVPNIAKLSLSPS---REPSLNSENEMFSQESFISEKDED 121
>sp|Q9BX84|TRPM6_HUMAN Transient receptor potential cation channel subfamily M member 6
(Channel kinase 2) (Melastatin-related TRP cation channel
6)
Length = 2022
Score = 31.2 bits (69), Expect = 3.9
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +1
Query: 505 QQSYQISDYLKKSMNLNDPYERKIFSSVMEVLRKKNRNPNSIDTESIAVDPVLQLSEYKS 684
Q + QISDYLK+S D + +++S R N N NS+ SI VD + +
Sbjct: 1652 QCAIQISDYLKQSQ--EDLSKNSLWNS-----RSTNLNRNSLLKSSIGVDKI------SA 1698
Query: 685 KFRNPQNKSVAFPTSKTENIVTVKQPL 765
++PQ + + N++ + Q +
Sbjct: 1699 SLKSPQEPHHHYSAIERNNLMRLSQTI 1725
>sp|P41910|MAF1_YEAST Repressor of RNA polymerase III transcription MAF1
Length = 395
Score = 31.2 bits (69), Expect = 3.9
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 33/208 (15%)
Frame = +1
Query: 172 STPFFTKKSDLKTYRVQTAQNSSSREHKCSTPFARPNTSHVTSNNRFSYSG--------- 324
S+PF++ + D ++ Q + S S + + N S+ S+N +YSG
Sbjct: 80 SSPFYSNRRDSNSFWEQKRRISFSEYNSNNNT----NNSNGNSSNNNNYSGPNGSSPATF 135
Query: 325 ---TKENEVIGKELLIQNYRPCSRDSL---------RRFRCRSAEHFAKPSQKTTSIAVG 468
K N+ KEL + NY S S R R RS+ + +S
Sbjct: 136 PKSAKLNDQNLKEL-VSNYDSGSMSSSSLDSSSKNDERIRRRSSSSISSFKSGKSS---- 190
Query: 469 PDKHFDTIATNTQQSYQISDYLKKSMNL--------NDPYERKIFSSVMEVLRKKNRNPN 624
+ + ATN + S ++ NL N+P RKIF+ ++ +L N +
Sbjct: 191 NNNYSSGTATNNVNKRRKSSINERPSNLSLGPFGPINEPSSRKIFAYLIAIL-----NAS 245
Query: 625 SIDTESIAVDPV----LQLSEYKSKFRN 696
D + +V+P L + SKF N
Sbjct: 246 YPDHDFSSVEPTDFVKTSLKTFISKFEN 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.127 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,227,650
Number of Sequences: 369166
Number of extensions: 1615044
Number of successful extensions: 4741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4738
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)