Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J14
(448 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor comp... 31 1.4
sp|P49031|SPS_BETVU Sucrose-phosphate synthase (UDP-glucose... 28 7.1
sp|P04928|SANT_PLAFN S-antigen protein precursor 28 7.1
sp|O67124|RAD50_AQUAE Probable DNA double-strand break repa... 28 7.1
sp|Q8VY05|SMCL_ARATH Putative SWI/SNF-related matrix-associ... 28 7.1
sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein ... 28 9.2
sp|Q9J5I7|V014_FOWPV Putative ankyrin repeat protein FPV014 28 9.2
>sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor complex subunit 1
Length = 585
Score = 30.8 bits (68), Expect = 1.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = +2
Query: 5 RHEGENVDNDEPETKKQRLS------DLNDIKVSEEKAQNGDDAE 121
+ + VD DEP++KKQRL DL D + + + NG+ A+
Sbjct: 358 KSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDSANGEKAK 402
>sp|P49031|SPS_BETVU Sucrose-phosphate synthase (UDP-glucose-fructose-phosphate
glucosyltransferase)
Length = 1045
Score = 28.5 bits (62), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 5 RHEGENVDNDEPETKKQRLSDLNDIKVSEE 94
R E +DN EPE+ L D+ DI ++ E
Sbjct: 674 RSSDEGLDNQEPESPSDSLRDIKDISLNLE 703
>sp|P04928|SANT_PLAFN S-antigen protein precursor
Length = 309
Score = 28.5 bits (62), Expect = 7.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 11 EGENVDNDEPETKKQRLSDLNDIKVSEEKAQNGDDAEEVQ 130
EGEN D + +++ + N+I V +++A D+AE ++
Sbjct: 65 EGENDDEEHSNSEESDNDEENEIIVGQDEAPKSDEAEALK 104
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
Length = 978
Score = 28.5 bits (62), Expect = 7.1
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 2 IRHEGENVDNDEPETKKQRLSDLNDIKVSEEKAQN 106
+R+E E + + PE K+R+ L ++++ +EK ++
Sbjct: 544 LRNEVEELRKEIPENLKERIKKLEELRIEKEKLEH 578
>sp|Q8VY05|SMCL_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily C member (AtSwi3C)
Length = 985
Score = 28.5 bits (62), Expect = 7.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 11 EGEN---VDNDEPETKKQRLSDLNDIKVSEEKAQNGDDAEE 124
E EN VD DE + D N+ KVS+E ++ GD +EE
Sbjct: 447 EAENKKRVDEDETMKEVPEPEDGNEEKVSQESSKPGDASEE 487
>sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein RAD52
Length = 505
Score = 28.1 bits (61), Expect = 9.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 23 VDNDEPETKKQRLSDLNDIKVSEEKAQNG 109
+DND P K+Q+L++ N I + + NG
Sbjct: 184 IDNDNPAVKRQKLNNQNSIPDTNKVKYNG 212
>sp|Q9J5I7|V014_FOWPV Putative ankyrin repeat protein FPV014
Length = 437
Score = 28.1 bits (61), Expect = 9.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 17 ENVDNDEPETKKQRLSDLNDIKVSEEKAQNGDDAEEV 127
+N +N E T + LND+K+++ G DAE++
Sbjct: 93 DNYENHESRTPLEYAVKLNDVKMTKTLLDYGADAEDI 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,465,593
Number of Sequences: 369166
Number of extensions: 485183
Number of successful extensions: 1478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)