Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J13
(708 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95169|NIAM_HUMAN NADH-ubiquinone oxidoreductase ASHI su... 99 1e-20
sp|Q02372|NIAM_BOVIN NADH-ubiquinone oxidoreductase ASHI su... 95 2e-19
sp|Q9D6J5|NIAM_MOUSE NADH-ubiquinone oxidoreductase ASHI su... 90 7e-18
sp|Q04464|VGLB_SHV1 Glycoprotein B precursor 35 0.20
sp|Q25390|SCRA_LIMPO Alpha-scruin 33 0.74
sp|P39352|YJHB_ECOLI Hypothetical metabolite transport prot... 32 2.2
sp|Q8CPC7|TKT_STAES Transketolase (TK) 31 2.8
sp|Q5HPJ9|TKT_STAEQ Transketolase 31 2.8
sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 30 4.8
sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-bin... 30 8.2
>sp|O95169|NIAM_HUMAN NADH-ubiquinone oxidoreductase ASHI subunit, mitochondrial
precursor (Complex I-ASHI) (CI-ASHI)
Length = 186
Score = 98.6 bits (244), Expect = 1e-20
Identities = 49/148 (33%), Positives = 76/148 (51%)
Frame = +3
Query: 96 IQKLISRNINYYNYQWKPGPYPQNAEERAQAAKKYGLRPDDYMPYPDDGLAMGDYPYVKP 275
+ L +R ++ PGPYP+ EERA AAKKY +R +DY PYPDDG+ GDYP +
Sbjct: 21 VMPLGARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPD 80
Query: 276 FNLDNRDPWEFYDYYPERRNYNEVLGIYNEAYRGGQSDPEPMTQFAPKVNWKMSLFYMTV 455
+ RDPW +D R N+ E + + + Y + D P V+W + +
Sbjct: 81 RSQHERDPWYSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSP-----TPVSWHVMCMQLFG 135
Query: 456 PFMVLCLLCYIDNRFKYFNPVMRKQFPY 539
+ +C++ + + + PV KQ+PY
Sbjct: 136 FLAFMIFMCWVGDVYPVYQPVGPKQYPY 163
>sp|Q02372|NIAM_BOVIN NADH-ubiquinone oxidoreductase ASHI subunit, mitochondrial
precursor (Complex I-ASHI) (CI-ASHI)
Length = 186
Score = 94.7 bits (234), Expect = 2e-19
Identities = 51/158 (32%), Positives = 78/158 (49%)
Frame = +3
Query: 66 LRIITKKNCKIQKLISRNINYYNYQWKPGPYPQNAEERAQAAKKYGLRPDDYMPYPDDGL 245
+R + K + L +R ++ PGPYP+ EERA AAKKY +R +DY PYPDDG
Sbjct: 11 VRWLQKAARNVVPLGARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGT 70
Query: 246 AMGDYPYVKPFNLDNRDPWEFYDYYPERRNYNEVLGIYNEAYRGGQSDPEPMTQFAPKVN 425
GDYP + + RDPW +D+ R N+ E + + Y + D P VN
Sbjct: 71 GYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPMHWDLDMYIRNRVDTSP-----TPVN 125
Query: 426 WKMSLFYMTVPFMVLCLLCYIDNRFKYFNPVMRKQFPY 539
W + ++ + + ++ + + PV KQ+PY
Sbjct: 126 WNLMCKHLFGFVAFMLFMFWVGETYPAYQPVGPKQYPY 163
>sp|Q9D6J5|NIAM_MOUSE NADH-ubiquinone oxidoreductase ASHI subunit, mitochondrial
precursor (Complex I-ASHI) (CI-ASHI)
Length = 186
Score = 89.7 bits (221), Expect = 7e-18
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 147 PGPYPQNAEERAQAAKKYGLRPDDYMPYPDDGLAMGDYPYVKPFNLDNRDPWEFYDYYPE 326
PG YP+ EERA AAKKY +R +DY PYPDDG+ GDYP + + RDPW +D+
Sbjct: 38 PGSYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPMLPNRSQHERDPWYQWDHSEL 97
Query: 327 RRNYNEVLGIYNEAYRGGQSDPEPMTQFAPKVNWKMSLFYM--TVPFMVLCLLCYIDNRF 500
R N+ E + + Y + D P V+W + ++ V FMV + ++ + F
Sbjct: 98 RMNWGEPIHWDLDMYIRNRVDTSP-----TPVSWDVMCKHLFGFVAFMV--FMFWVGHVF 150
Query: 501 KYFNPVMRKQFPY 539
+ PV KQ+PY
Sbjct: 151 PSYQPVGPKQYPY 163
>sp|Q04464|VGLB_SHV1 Glycoprotein B precursor
Length = 920
Score = 35.0 bits (79), Expect = 0.20
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 225 PYPDDGLAMGDYPYVKPFNLDNRDPWEFYDYYPERRNYNEVLGIYNEAYRGGQSDPEPMT 404
PY + LA GD+ YV PF D Y+ Y R + +V G + G++ PEP+
Sbjct: 294 PYSNFVLATGDFVYVSPFYGLGEDAHREYNAYSADR-FKQVDGFFPRDLDSGETAPEPVV 352
Query: 405 Q 407
+
Sbjct: 353 R 353
>sp|Q25390|SCRA_LIMPO Alpha-scruin
Length = 918
Score = 33.1 bits (74), Expect = 0.74
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 291 RDPWEFYDYYPERRNYNEVLGIYNEAYRGGQSDPEPMT 404
+D WEF+ Y P+ RNY+ + Y G DP+ T
Sbjct: 618 KDRWEFFGYMPQPRNYHAAAYYRSAIYITGGYDPDVRT 655
>sp|P39352|YJHB_ECOLI Hypothetical metabolite transport protein yjhB
Length = 405
Score = 31.6 bits (70), Expect = 2.2
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 297 PWEFYDYYPERRNYNEVLGIYNEAYRGGQSDPEPMTQFAPKVNWKMSLFYMTVPFMVLCL 476
P YDY+P + IYN GG + P T + +SLF +TV F L +
Sbjct: 328 PKFIYDYFPTKLRGLGTGLIYNLGATGGMAAPVLATYISGYYGLGVSLFIVTVAFSALLI 387
Query: 477 L 479
L
Sbjct: 388 L 388
>sp|Q8CPC7|TKT_STAES Transketolase (TK)
Length = 662
Score = 31.2 bits (69), Expect = 2.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 159 PQNAEERAQAAKKYGLRPDDYMPYPDDGLAMGDYPYVKPFNLDNRDPWEFYDYYPERRNY 338
P EERA K+YGL P+ P+D + +K N +N + W
Sbjct: 264 PLGEEERALTFKEYGLDPEKRFNVPEDVYEIFKSTMLKRAN-ENEEAW------------ 310
Query: 339 NEVLGIYNEAY 371
N +L Y+EAY
Sbjct: 311 NNMLKNYSEAY 321
>sp|Q5HPJ9|TKT_STAEQ Transketolase
Length = 662
Score = 31.2 bits (69), Expect = 2.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 159 PQNAEERAQAAKKYGLRPDDYMPYPDDGLAMGDYPYVKPFNLDNRDPWEFYDYYPERRNY 338
P EERA K+YGL P+ P+D + +K N +N + W
Sbjct: 264 PLGEEERALTFKEYGLDPEKRFNVPEDVYEIFKSTMLKRAN-ENEEAW------------ 310
Query: 339 NEVLGIYNEAY 371
N +L Y+EAY
Sbjct: 311 NNMLKNYSEAY 321
>sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1
Length = 691
Score = 30.4 bits (67), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 210 PDDYMPYPDDGLAMGDYPYVKPFN 281
P Y+P+P G + G YP +PF+
Sbjct: 335 PQQYVPFPPPGASTGSYPMPQPFS 358
>sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-binding family A member 2
(Neuron-specific X11L protein) (Neuronal
Munc18-1-interacting protein 2) (Mint-2) (Adapter
protein X11beta)
Length = 749
Score = 29.6 bits (65), Expect = 8.2
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Frame = +3
Query: 150 GPYPQNAEERAQAAKKYGLRPDDYMPYPDDGLAMGDYPYVKPFNLDNRDPWE-------- 305
GP+P E A+ ++ Y PD +P P+D +P L+ D E
Sbjct: 146 GPHPHGHE--AEGSQDY---PDGQLPIPED----------EPSVLEAHDQEEDGHYCASK 190
Query: 306 --FYDYYPERRNYNEVLGIYNEAYRGG--QSDPEPMTQFAPKVNWKMSLFYMT 452
+ DYYPE N N Y G + E + Q ++ +S+ +T
Sbjct: 191 EGYQDYYPEEANGNTGASPYRLRRGDGDLEDQEEDIDQIVAEIKMSLSMTSIT 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,695,192
Number of Sequences: 369166
Number of extensions: 1616201
Number of successful extensions: 3590
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3587
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)