Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J06
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 167 2e-41
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 165 9e-41
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 164 2e-40
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 164 2e-40
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 145 1e-34
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 142 1e-33
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 141 1e-33
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 140 2e-33
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 139 9e-33
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 137 3e-32
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 167 bits (424), Expect = 2e-41
Identities = 88/186 (47%), Positives = 124/186 (66%)
Frame = +2
Query: 11 EVKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 190
++ F+GEGDQEP LEPGD+ IVL++K H+VF R+ DLI MK+ L ++LCGFK+TI TL
Sbjct: 222 KILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTL 281
Query: 191 DNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLN 370
DNRILV+ +K GEVIK+ + R + +EGMP YK+P E+G LIIQF V+FPE ++L +KL
Sbjct: 282 DNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLP 341
Query: 371 KLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGG 550
+L ++LPP Q D+M + E L + P+ N + + Y+ D++G G
Sbjct: 342 QLEALLPPRQKVRITDDMDQVE---LKEFCPNEQN------WRQHREAYEEDEDGPQAG- 391
Query: 551 AQRVQC 568
VQC
Sbjct: 392 ---VQC 394
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 165 bits (418), Expect = 9e-41
Identities = 86/186 (46%), Positives = 123/186 (66%)
Frame = +2
Query: 11 EVKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 190
++ F+GEGDQEP L+PGD+ IVL++K H+VF R+ DLI MK+ L ++LCGFK+TI TL
Sbjct: 222 KILFHGEGDQEPELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTL 281
Query: 191 DNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLN 370
D+R+LV+ +K GEVIK+ + + I NEGMP YK+P E+G +IIQF VVFPE +L +KL
Sbjct: 282 DDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLP 341
Query: 371 KLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGG 550
+L ++LPP Q D+M + E L ++P ++ + + Y+ DDE G
Sbjct: 342 QLEALLPPRQKVRITDDMDQVE---LKEFNP------NEQSWRQHREAYEEDDEEPRAG- 391
Query: 551 AQRVQC 568
VQC
Sbjct: 392 ---VQC 394
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 164 bits (416), Expect = 2e-40
Identities = 85/182 (46%), Positives = 119/182 (65%)
Frame = +2
Query: 11 EVKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 190
++ F+GEGDQEPGLEPGDI IVL++K H VFTR+ DL M + LV++LCGF++ I+TL
Sbjct: 221 KITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL 280
Query: 191 DNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLN 370
DNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+GRLII+F V FPEN FL DKL+
Sbjct: 281 DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLS 340
Query: 371 KLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGG 550
L +LP + D M + E L +DP+ + R H Y+ DDE GG
Sbjct: 341 LLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYNGEAYE-DDEHHPRGG 391
Query: 551 AQ 556
Q
Sbjct: 392 VQ 393
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 164 bits (416), Expect = 2e-40
Identities = 85/182 (46%), Positives = 119/182 (65%)
Frame = +2
Query: 11 EVKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 190
++ F+GEGDQEPGLEPGDI IVL++K H VFTR+ DL M + LV++LCGF++ I+TL
Sbjct: 221 KITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL 280
Query: 191 DNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLN 370
DNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+GRLII+F V FPEN FL DKL+
Sbjct: 281 DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLS 340
Query: 371 KLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGG 550
L +LP + D M + E L +DP+ + R H Y+ DDE GG
Sbjct: 341 LLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYNGEAYE-DDEHHPRGG 391
Query: 551 AQ 556
Q
Sbjct: 392 VQ 393
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 145 bits (366), Expect = 1e-34
Identities = 81/189 (42%), Positives = 117/189 (61%), Gaps = 2/189 (1%)
Frame = +2
Query: 11 EVKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 190
++ F GE D+ P GDI VL++K H F RK DL Y L L ++LCGF+ +T L
Sbjct: 235 KITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFYEHSLSLTEALCGFQFVLTHL 294
Query: 191 DNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLN 370
DNR L++++ PGEVIK +++ I++EGMP Y+ PF +G+L I F V FP++ L D+
Sbjct: 295 DNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDS--LTPDQCK 352
Query: 371 KLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMP 544
L S+L PS+ +S L +M+ E EE +H D ++ + ++ + YD DDEG
Sbjct: 353 ALESVL-PSRNASRLTDMEIDECEETTMH--DVNIEEEMRRKQHQQAQEAYDEDDEG--H 407
Query: 545 GGAQRVQCA 571
GGAQRVQCA
Sbjct: 408 GGAQRVQCA 416
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 142 bits (357), Expect = 1e-33
Identities = 79/186 (42%), Positives = 109/186 (58%)
Frame = +2
Query: 14 VKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLD 193
+ F GE DQ PG+EPGDI ++L+EK H VF R DL K+ LV++LCGF+ T LD
Sbjct: 231 ITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLD 290
Query: 194 NRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNK 373
R +VV+ PG+VI+ R + EGMP+Y++PFE+G L I+FDV FPENN++ DKL++
Sbjct: 291 GRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSE 350
Query: 374 LRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGA 553
L +LP ++ + E EE L +D + + Q R DS DE
Sbjct: 351 LEDLLPSRPEVPNI--IGETEEVELQEFDSTRGSGGGQ----RREAYNDSSDEESSSHHG 404
Query: 554 QRVQCA 571
VQCA
Sbjct: 405 PGVQCA 410
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 141 bits (356), Expect = 1e-33
Identities = 78/187 (41%), Positives = 111/187 (59%), Gaps = 1/187 (0%)
Frame = +2
Query: 14 VKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLD 193
+ F GE D+ P GDI VL++K H F RK DL Y L L ++LCGF+ +T LD
Sbjct: 215 ITFPGEADEAPDTVTGDIVFVLQQKEHPKFQRKGDDLFYKHTLSLTEALCGFQFVLTHLD 274
Query: 194 NRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNK 373
R L++++ PGEV+K +++AI++EGMP Y+ PF +G+L IQF V FP++ L D+
Sbjct: 275 GRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIQFLVDFPDS--LTPDQCKV 332
Query: 374 LRSILPPSQFSSSLD-NMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGG 550
+ S+LP S S D + E EE +H D ++ + ++ YD DDEG GG
Sbjct: 333 IESVLPRSASSQLTDMEIDECEETTMH--DVNIEEEMRRKQHQHAQEAYDEDDEG--HGG 388
Query: 551 AQRVQCA 571
QRVQCA
Sbjct: 389 GQRVQCA 395
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 140 bits (354), Expect = 2e-33
Identities = 79/186 (42%), Positives = 109/186 (58%)
Frame = +2
Query: 14 VKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLD 193
+ F GE DQ PG+EPGDI ++L+EK H VF R DL K+ LV++LCGF+ T LD
Sbjct: 231 ITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLD 290
Query: 194 NRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNK 373
R +VV+ PG+VI+ R + EGMP+Y++PFE+G L I+FDV FPENN++ DKL++
Sbjct: 291 ARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSE 350
Query: 374 LRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGA 553
L +LP ++ + E EE L +D + + Q R DS DE
Sbjct: 351 LEDLLPSRPEVPNV--IGETEEVELQEFDSTRGSGGGQ----RREAYNDSSDEESSSHHG 404
Query: 554 QRVQCA 571
VQCA
Sbjct: 405 PGVQCA 410
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 139 bits (349), Expect = 9e-33
Identities = 78/186 (41%), Positives = 108/186 (58%)
Frame = +2
Query: 14 VKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLD 193
+ F GE DQ PG+EPGDI + ++EK H VF R DL K+ LV++LCGF+ T LD
Sbjct: 231 ITFTGEADQAPGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLD 290
Query: 194 NRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNK 373
R +VV+ PG+VI+ R + EGMP+Y++PFE+G L I+FDV FPENN++ DKL++
Sbjct: 291 ARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSE 350
Query: 374 LRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGA 553
L +LP ++ + E EE L +D + + Q R DS DE
Sbjct: 351 LEDLLPSRPEVPNV--IGETEEVELQEFDSTRGSGGGQ----RREAYNDSSDEESSSHHG 404
Query: 554 QRVQCA 571
VQCA
Sbjct: 405 PGVQCA 410
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 137 bits (345), Expect = 3e-32
Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 1/188 (0%)
Frame = +2
Query: 11 EVKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 190
++ F G+ D+ P GDI VL++K H F RK DL L L ++LCGF+ +T L
Sbjct: 235 KITFEGQADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFVEHTLSLTEALCGFQFVLTHL 294
Query: 191 DNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLN 370
D R L++++ PGEV+K Y+AI +EGMP Y+ PF +G+L I F V FP++ L D+
Sbjct: 295 DGRSLLIKSNPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPDS--LSPDQTK 352
Query: 371 KLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPG 547
L ++LP PS S + E EE LH D ++ + + +R D D++ PG
Sbjct: 353 ALEAVLPKPSTAQLSDMEIDECEETTLH--DVNIEDEMRRKAQAQREAYDDDDEDDDHPG 410
Query: 548 GAQRVQCA 571
GAQRVQCA
Sbjct: 411 GAQRVQCA 418
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,017,317
Number of Sequences: 369166
Number of extensions: 1435765
Number of successful extensions: 4236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4207
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)