Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J04
(787 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II ... 377 e-104
sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II ... 377 e-104
sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II ... 375 e-104
sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II ... 373 e-103
sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II ... 367 e-101
sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II ... 326 4e-89
sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II... 249 8e-66
sp|P40232|CSK2B_SCHPO Casein kinase II beta subunit (CK II ... 240 4e-63
sp|O80507|CSK2E_ARATH Putative casein kinase II beta-4 subu... 239 6e-63
sp|O81275|CSK2D_ARATH Casein kinase II beta-3 subunit (CK I... 238 2e-62
>sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 377 bits (969), Expect = e-104
Identities = 174/210 (82%), Positives = 187/210 (89%)
Frame = +3
Query: 54 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXX 233
MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQD+FNLTGLNEQVPHYRQALDMI
Sbjct: 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60
Query: 234 XXXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSL 413
QSD+IEQAAEMLYGLIHARYILT RGIAQM+EK+QQ +FGYCPRVYCE QP L
Sbjct: 61 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120
Query: 414 PIGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPI 593
PIGLSD+PGEAMVKLYCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP
Sbjct: 121 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA 180
Query: 594 NQFVPKLYGFKIHPLAYQIQYQAAANCKMP 683
NQFVP+LYGFKIHP+AYQ+Q QAA+N K P
Sbjct: 181 NQFVPRLYGFKIHPMAYQLQLQAASNFKSP 210
>sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II beta) (Phosvitin) (G5a)
sp|P67874|CSK2B_RAT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67873|CSK2B_RABIT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67872|CSK2B_PIG Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67871|CSK2B_MOUSE Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67869|CSK2B_CHICK Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67868|CSK2B_BOVIN Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 377 bits (969), Expect = e-104
Identities = 174/210 (82%), Positives = 187/210 (89%)
Frame = +3
Query: 54 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXX 233
MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQD+FNLTGLNEQVPHYRQALDMI
Sbjct: 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60
Query: 234 XXXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSL 413
QSD+IEQAAEMLYGLIHARYILT RGIAQM+EK+QQ +FGYCPRVYCE QP L
Sbjct: 61 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120
Query: 414 PIGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPI 593
PIGLSD+PGEAMVKLYCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP
Sbjct: 121 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA 180
Query: 594 NQFVPKLYGFKIHPLAYQIQYQAAANCKMP 683
NQFVP+LYGFKIHP+AYQ+Q QAA+N K P
Sbjct: 181 NQFVPRLYGFKIHPMAYQLQLQAASNFKSP 210
>sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II beta)
Length = 215
Score = 375 bits (964), Expect = e-104
Identities = 173/210 (82%), Positives = 187/210 (89%)
Frame = +3
Query: 54 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXX 233
MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQD+FNLTGLNEQVPHYRQALDMI
Sbjct: 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60
Query: 234 XXXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSL 413
QSD+IEQAAEMLYGLIHARYILT RGIAQM+EK+QQ +FGYCPRVYCE QP L
Sbjct: 61 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120
Query: 414 PIGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPI 593
PIGLSD+PGEAMVKLYCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP
Sbjct: 121 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA 180
Query: 594 NQFVPKLYGFKIHPLAYQIQYQAAANCKMP 683
NQFVP+LYGFKIHP+AYQ+Q QAA++ K P
Sbjct: 181 NQFVPRLYGFKIHPMAYQLQLQAASSFKSP 210
>sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II beta)
Length = 221
Score = 373 bits (958), Expect = e-103
Identities = 173/221 (78%), Positives = 192/221 (86%), Gaps = 1/221 (0%)
Frame = +3
Query: 54 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXX 233
MSSSEEVSWISWFCGLRGNEFFCEVDEDYI D+FNLTGLNEQVPHYRQALDMI
Sbjct: 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYRQALDMILDLEPDD 60
Query: 234 XXXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSL 413
QSD++EQA+E+LYGLIHARYILT RGI QM+EK+Q +FG+CPRVYCE QP L
Sbjct: 61 DLDDNPNQSDLVEQASEILYGLIHARYILTNRGIGQMLEKFQAGDFGHCPRVYCECQPML 120
Query: 414 PIGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPI 593
P+GLSDVPGEAMVKLYCP+C DVYTPKS+RHHHTDGAYFGTGFPHM+F++HPEYRPKRP
Sbjct: 121 PLGLSDVPGEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPEYRPKRPA 180
Query: 594 NQFVPKLYGFKIHPLAYQIQYQAAANCKMPPRN-AYGNGKR 713
+QFVP+LYGFKIHPLAYQIQ QAAAN K P R+ +Y NGKR
Sbjct: 181 SQFVPRLYGFKIHPLAYQIQQQAAANFKAPLRSLSYNNGKR 221
>sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II beta)
Length = 235
Score = 367 bits (942), Expect = e-101
Identities = 172/216 (79%), Positives = 186/216 (86%)
Frame = +3
Query: 54 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXX 233
MSSSEEVSW++WFCGLRGNEFFCEVDEDYIQD+FNLTGLNEQVP+YRQALDMI
Sbjct: 1 MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQALDMILDLEPED 60
Query: 234 XXXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSL 413
QSD+ EQAAEMLYGLIHARYILT RGIAQMIEK+Q +FG+CPRVYCE QP L
Sbjct: 61 ELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEKYQTGDFGHCPRVYCESQPML 120
Query: 414 PIGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPI 593
P+GLSD+PGEAMVK YCPKC DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP
Sbjct: 121 PLGLSDIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPT 180
Query: 594 NQFVPKLYGFKIHPLAYQIQYQAAANCKMPPRNAYG 701
NQFVP+LYGFKIH LAYQIQ QAAAN KMP R G
Sbjct: 181 NQFVPRLYGFKIHSLAYQIQLQAAANFKMPLRAQRG 216
>sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II beta)
Length = 234
Score = 326 bits (836), Expect = 4e-89
Identities = 149/197 (75%), Positives = 168/197 (85%)
Frame = +3
Query: 54 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXX 233
MSSSEEVSWI+WFCGLRGNEFFCEVDE+YIQDRFNLTGLNEQVP YRQALDMI
Sbjct: 1 MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDD 60
Query: 234 XXXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSL 413
+D++EQAAEMLYGLIHARYILT RGI+QM+EKW+ +FG CPRVYCE QP L
Sbjct: 61 IEDNAT-NTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 119
Query: 414 PIGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPI 593
PIGLSDVPGEAMVKLYCP+C V+ P+S+RH HTDG+YFGTGFPHMLF +HP+ RP+RP+
Sbjct: 120 PIGLSDVPGEAMVKLYCPRCNMVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 179
Query: 594 NQFVPKLYGFKIHPLAY 644
QFVPKLYGFKIHP+AY
Sbjct: 180 TQFVPKLYGFKIHPVAY 196
>sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II beta')
Length = 219
Score = 249 bits (635), Expect = 8e-66
Identities = 117/211 (55%), Positives = 147/211 (69%)
Frame = +3
Query: 54 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXX 233
M+ S+E SWI WFC RGNEFFCEVDE+YIQD+FNL L+ V +Y+ AL++I
Sbjct: 1 MTDSDESSWIHWFCKQRGNEFFCEVDEEYIQDKFNLNFLDSNVKNYKCALEVILDLNPGS 60
Query: 234 XXXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSL 413
+E +AE LYGLIHAR+ILT RGI M++K+ + EFG CPR +C QP L
Sbjct: 61 ASEDPAEPE--LEASAEKLYGLIHARFILTNRGIELMLDKYNKGEFGTCPRAFCHSQPVL 118
Query: 414 PIGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPI 593
PIGLSD PGE MV++YCPKC DVY PK++RH + DGA+FGTGFPHM F+ P+ RPKR
Sbjct: 119 PIGLSDNPGEDMVRIYCPKCNDVYIPKASRHSNLDGAFFGTGFPHMFFMEKPDARPKRAK 178
Query: 594 NQFVPKLYGFKIHPLAYQIQYQAAANCKMPP 686
+FVP+LYGFKIHP AY+ + + M P
Sbjct: 179 QKFVPRLYGFKIHPTAYRTAAEIQKDVTMTP 209
>sp|P40232|CSK2B_SCHPO Casein kinase II beta subunit (CK II beta)
Length = 231
Score = 240 bits (612), Expect = 4e-63
Identities = 106/191 (55%), Positives = 139/191 (72%)
Frame = +3
Query: 60 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXX 239
S + W+ WF GL+GNEFFCEVDED+IQDRFNLTGL+ +VPHY Q+LD+I
Sbjct: 10 SDDSQYWVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLP 69
Query: 240 XXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPI 419
D +E +A LYGLIHARYILT +G+ +M+EK+++C+FG+CPRV C QP LP+
Sbjct: 70 EEV---QDEVEASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVLCNGQPMLPV 126
Query: 420 GLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQ 599
GLSD+ VKLYCP+C+DVYTPKS RH DGAYFGT FPHMLF ++PE + +
Sbjct: 127 GLSDIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQER 186
Query: 600 FVPKLYGFKIH 632
++P+++GFK+H
Sbjct: 187 YIPRIFGFKVH 197
>sp|O80507|CSK2E_ARATH Putative casein kinase II beta-4 subunit (CK II beta-4)
Length = 283
Score = 239 bits (610), Expect = 6e-63
Identities = 105/192 (54%), Positives = 138/192 (71%)
Frame = +3
Query: 57 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXX 236
S ++ SWISWFC LRGNEFFCEVDEDYIQD FNL GL+ QVP+Y ALD+I
Sbjct: 89 SEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148
Query: 237 XXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLP 416
Q +++E AAEMLYGLIH RYILTT+G+A M+EK++ +FG CPRV+C Q LP
Sbjct: 149 DMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLP 208
Query: 417 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 596
+G SD+P + VK+YCPKC+D+Y P+S + DGAYFGT FPH+ + + +P++P
Sbjct: 209 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQ 268
Query: 597 QFVPKLYGFKIH 632
+VPK++GFK+H
Sbjct: 269 NYVPKIFGFKVH 280
>sp|O81275|CSK2D_ARATH Casein kinase II beta-3 subunit (CK II beta-3)
Length = 276
Score = 238 bits (606), Expect = 2e-62
Identities = 104/192 (54%), Positives = 137/192 (71%)
Frame = +3
Query: 57 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXX 236
S ++ SWISWFC LRGN+FFCEVDEDYIQD FNL GL+ QVP+Y ALD+I
Sbjct: 83 SEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNS 142
Query: 237 XXXXXXQSDIIEQAAEMLYGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLP 416
Q +++E AAEMLYGLIH RYILTT+G+A M EK++ C+FG CPRV+C Q LP
Sbjct: 143 EMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLP 202
Query: 417 IGLSDVPGEAMVKLYCPKCQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPIN 596
+G SD+P + VK+YCPKC+D+ P+S + DGAYFGT FPH+ + + +P++P
Sbjct: 203 VGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQ 262
Query: 597 QFVPKLYGFKIH 632
+VPK++GFK+H
Sbjct: 263 SYVPKIFGFKVH 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,039,247
Number of Sequences: 369166
Number of extensions: 1628327
Number of successful extensions: 3601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3570
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)