Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I15
(417 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06198|MYSP_SCHMA Paramyosin 105 4e-23
sp|Q05870|MYSP_SCHJA Paramyosin (Antigen Sj97) 105 4e-23
sp|P35417|MYSP_ECHGR Paramyosin 100 2e-21
sp|Q8T305|MYSP_TAESA Paramyosin 100 2e-21
sp|P35418|MYSP_TAESO Paramyosin (Antigen B) (AgB) 100 2e-21
sp|O96064|MYSP_MYTGA Paramyosin 68 9e-12
sp|P05661|MYSA_DROME Myosin heavy chain, muscle 60 2e-09
sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal musc... 57 1e-08
sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, a... 56 3e-08
sp|P13539|MYH6_MESAU Myosin heavy chain, cardiac muscle alp... 55 7e-08
>sp|P06198|MYSP_SCHMA Paramyosin
Length = 866
Score = 105 bits (262), Expect = 4e-23
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +2
Query: 2 TQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGSVMPGST 181
TQ+KM+AYKRQLEE+E+VS + MNKYRKAQQQIE+AEHRADMAER +TVRR G PG
Sbjct: 788 TQMKMKAYKRQLEEMEEVSQITMNKYRKAQQQIEEAEHRADMAERTVTVRRVG---PGG- 843
Query: 182 YRAISVVRETSTVNTSRGARATSI 253
RA+SV RE S V ++RG RATS+
Sbjct: 844 -RAVSVARELS-VTSNRGMRATSM 865
>sp|Q05870|MYSP_SCHJA Paramyosin (Antigen Sj97)
Length = 866
Score = 105 bits (262), Expect = 4e-23
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +2
Query: 2 TQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGSVMPGST 181
TQ+KM+AYKRQLEE+E+VS + MNKYRKAQQQIE+AEHRADMAER +TVRR G PG
Sbjct: 788 TQMKMKAYKRQLEEMEEVSQITMNKYRKAQQQIEEAEHRADMAERTVTVRRVG---PGG- 843
Query: 182 YRAISVVRETSTVNTSRGARATSI 253
RA+SV RE S V ++RG RATS+
Sbjct: 844 -RAVSVARELS-VTSNRGMRATSM 865
>sp|P35417|MYSP_ECHGR Paramyosin
Length = 863
Score = 99.8 bits (247), Expect = 2e-21
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +2
Query: 2 TQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGSVMPGST 181
TQ+KM+AYKRQLEE E+VS + M+KYRKAQQQIE+AEHRADMAER +T++R + G
Sbjct: 784 TQIKMKAYKRQLEEQEEVSQLTMSKYRKAQQQIEEAEHRADMAERTITIKR---TIGGPG 840
Query: 182 YRAISVVRETSTVNTSRGARATSI 253
RA+SVVRE ++V SRG RATSI
Sbjct: 841 SRAVSVVREINSV--SRGNRATSI 862
>sp|Q8T305|MYSP_TAESA Paramyosin
Length = 863
Score = 99.8 bits (247), Expect = 2e-21
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +2
Query: 2 TQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGSVMPGST 181
TQ+KM+AYKRQLEE E+VS + M+KYRKAQQQIE+AEHRADMAER +T++R + G
Sbjct: 784 TQIKMKAYKRQLEEQEEVSQLTMSKYRKAQQQIEEAEHRADMAERTITIKR---TIGGPG 840
Query: 182 YRAISVVRETSTVNTSRGARATSI 253
RA+SVVRE ++V SRG RATSI
Sbjct: 841 SRAVSVVREINSV--SRGNRATSI 862
>sp|P35418|MYSP_TAESO Paramyosin (Antigen B) (AgB)
Length = 863
Score = 99.8 bits (247), Expect = 2e-21
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +2
Query: 2 TQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGSVMPGST 181
TQ+KM+AYKRQLEE E+VS + M+KYRKAQQQIE+AEHRADMAER +T++R + G
Sbjct: 784 TQIKMKAYKRQLEEQEEVSQLTMSKYRKAQQQIEEAEHRADMAERTITIKR---TIGGPG 840
Query: 182 YRAISVVRETSTVNTSRGARATSI 253
RA+SVVRE ++V SRG RATSI
Sbjct: 841 SRAVSVVREINSV--SRGNRATSI 862
>sp|O96064|MYSP_MYTGA Paramyosin
Length = 864
Score = 67.8 bits (164), Expect = 9e-12
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +2
Query: 8 LKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHL-TVRRAGSVMPGSTY 184
+K + YKR +EE EDV+++ MNKYRKAQ I++AE RADMAE++L TVRR+
Sbjct: 799 MKCKTYKRMIEEAEDVASITMNKYRKAQSLIDEAEQRADMAEKNLQTVRRS--------- 849
Query: 185 RAISVVRETSTV 220
R++SV RE + V
Sbjct: 850 RSMSVSREVTRV 861
Score = 27.7 bits (60), Expect = 9.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 5 QLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAER 136
+L++ RQL++ + +V+ K QQ++EDA + AER
Sbjct: 580 ELQLEEATRQLDDTRNQLSVSERKRITIQQELEDARSLLEHAER 623
>sp|P05661|MYSA_DROME Myosin heavy chain, muscle
Length = 1962
Score = 60.1 bits (144), Expect = 2e-09
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +2
Query: 5 QLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGSVMPGSTY 184
Q K++ YKRQ+EE E+++ + + K+RKAQQ++E+AE RAD+AE+ ++ RA
Sbjct: 1871 QQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAISKFRAKG------- 1923
Query: 185 RAISVVRETSTVNTSRGARATSIR 256
RA SV R S RATS+R
Sbjct: 1924 RAGSVGR-----GASPAPRATSVR 1942
>sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal muscle, embryonic
Length = 1940
Score = 57.4 bits (137), Expect = 1e-08
Identities = 26/53 (49%), Positives = 40/53 (75%)
Frame = +2
Query: 5 QLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGS 163
Q+K+++YKRQ EE E++S V ++K+RK Q ++E+AE RAD+AE + RA S
Sbjct: 1877 QMKVKSYKRQAEEAEELSNVNLSKFRKIQHELEEAEERADIAESQVNKLRAKS 1929
>sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, adult
Length = 1939
Score = 55.8 bits (133), Expect = 3e-08
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = +2
Query: 5 QLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGS 163
Q+K+++YKRQ EE E++S V ++K+RK Q ++E+AE RAD+AE + R S
Sbjct: 1875 QMKVKSYKRQAEEAEELSNVNLSKFRKIQHELEEAEERADIAESQVNKLRVKS 1927
>sp|P13539|MYH6_MESAU Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha)
Length = 1939
Score = 54.7 bits (130), Expect = 7e-08
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +2
Query: 5 QLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAERHLTVRRAGS 163
QLK++AYKRQ EE E+ + ++K+RK Q ++++AE RAD+AE + RA S
Sbjct: 1874 QLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKS 1926
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,519,873
Number of Sequences: 369166
Number of extensions: 543236
Number of successful extensions: 1504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)