Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I13
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8EWT7|RS6_MYCPE 30S ribosomal protein S6 32 1.3
sp|O94744|GIT3_SCHPO Glucose receptor protein git3 (Glucose... 30 3.6
>sp|Q8EWT7|RS6_MYCPE 30S ribosomal protein S6
Length = 145
Score = 31.6 bits (70), Expect = 1.3
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 12 YRTEKYKRLKTEVDKQSKKLEKQRDDFVETISD 110
+R E+YKR+K +V + +K+ K+RD+ ++D
Sbjct: 112 FRAERYKRIKEQVLAEQEKIRKERDNTPVKLTD 144
>sp|O94744|GIT3_SCHPO Glucose receptor protein git3 (Glucose insensitive transcription
protein 3)
Length = 466
Score = 30.0 bits (66), Expect = 3.6
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 207 GLAFTAFVSMFSSIFEGRIVCRLPFTPISFLQGLSHRNLAGDDYTECSFIFLYIICTMSI 386
GLAFT + F ++ + C LP+TP+ F+ GL N + D + I L +SI
Sbjct: 159 GLAFTNKRNTFVNL---QTRCYLPYTPVRFMFGL---NWSFDYALSIAIIALQTCMFISI 212
Query: 387 RQNVQK 404
R+ +++
Sbjct: 213 RRKIKR 218
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,953,673
Number of Sequences: 369166
Number of extensions: 861481
Number of successful extensions: 2399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2399
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)