Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I10
(221 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UNH7|SNX6_HUMAN Sorting nexin-6 (TRAF4-associated fact... 36 0.031
sp|Q9Y5X3|SNX5_HUMAN Sorting nexin-5 36 0.031
sp|Q5R613|SNX6_PONPY Sorting nexin-6 36 0.031
sp|Q9D8U8|SNX5_MOUSE Sorting nexin-5 36 0.031
>sp|Q9UNH7|SNX6_HUMAN Sorting nexin-6 (TRAF4-associated factor 2)
Length = 406
Score = 35.8 bits (81), Expect = 0.031
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +2
Query: 26 FQKNLTELTKLQLKHARSHIQVLRTALNAL 115
F+KNL EL +L+LKHA+ ++Q+L+ L L
Sbjct: 373 FRKNLVELAELELKHAKGNLQLLQNCLAVL 402
>sp|Q9Y5X3|SNX5_HUMAN Sorting nexin-5
Length = 404
Score = 35.8 bits (81), Expect = 0.031
Identities = 13/36 (36%), Positives = 27/36 (75%)
Frame = +2
Query: 11 KTYCLFQKNLTELTKLQLKHARSHIQVLRTALNALK 118
K F+KNL E+++L++KHAR+++ +L++ ++ K
Sbjct: 367 KRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFK 402
>sp|Q5R613|SNX6_PONPY Sorting nexin-6
Length = 406
Score = 35.8 bits (81), Expect = 0.031
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +2
Query: 26 FQKNLTELTKLQLKHARSHIQVLRTALNAL 115
F+KNL EL +L+LKHA+ ++Q+L+ L L
Sbjct: 373 FRKNLVELAELELKHAKGNLQLLQNCLAVL 402
>sp|Q9D8U8|SNX5_MOUSE Sorting nexin-5
Length = 404
Score = 35.8 bits (81), Expect = 0.031
Identities = 13/36 (36%), Positives = 27/36 (75%)
Frame = +2
Query: 11 KTYCLFQKNLTELTKLQLKHARSHIQVLRTALNALK 118
K F+KNL E+++L++KHAR+++ +L++ ++ K
Sbjct: 367 KRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFK 402
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,156,190
Number of Sequences: 369166
Number of extensions: 310872
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 68,354,980
effective HSP length: 45
effective length of database: 60,041,905
effective search space used: 1681173340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)