Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I08
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21708|MK03_RAT Mitogen-activated protein kinase 3 (Extr... 373 e-103
sp|Q63844|MK03_MOUSE Mitogen-activated protein kinase 3 (Ex... 373 e-103
sp|P27361|MK03_HUMAN Mitogen-activated protein kinase 3 (Ex... 372 e-103
sp|P26696|MK01_XENLA Mitogen-activated protein kinase 1 (My... 370 e-102
sp|P46196|MK01_BOVIN Mitogen-activated protein kinase 1 (Ex... 370 e-102
sp|P28482|MK01_HUMAN Mitogen-activated protein kinase 1 (Ex... 369 e-102
sp|P63086|MK01_RAT Mitogen-activated protein kinase 1 (Extr... 369 e-102
sp|P39745|SUR1_CAEEL Mitogen-activated protein kinase mpk-1... 365 e-100
sp|P40417|ERKA_DROME Mitogen-activated protein kinase ERK-A... 359 6e-99
sp|Q00859|MAPK_FUSSO Mitogen-activated protein kinase (FsMAPK) 296 6e-80
>sp|P21708|MK03_RAT Mitogen-activated protein kinase 3 (Extracellular signal-regulated
kinase 1) (ERK-1) (Insulin-stimulated MAP2 kinase) (MAP
kinase 1) (MAPK 1) (p44-ERK1) (ERT2) (p44-MAPK)
(Microtubule-associated protein 2 kinase) (MNK1)
Length = 380
Score = 373 bits (958), Expect = e-103
Identities = 171/252 (67%), Positives = 212/252 (84%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL K+Q+LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 122 VQDLMETDLYKLLKSQQLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDL 181
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+R+ DPEHDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 182 KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 241
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ +LG P++ED I+N KAR++++ +KTK W +L+P +D
Sbjct: 242 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINMKARNYLQSLPSKTKVAWAKLFPKSD 301
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP KR+TVE ALA PYL QYY+PTDEPVA PFTF+ ELDDLP E+L
Sbjct: 302 SKALDLLDRMLTFNPNKRITVEEALAHPYLEQYYDPTDEPVAEEPFTFDMELDDLPKERL 361
Query: 723 REMIWERVKYFR 758
+E+I++ F+
Sbjct: 362 KELIFQETARFQ 373
>sp|Q63844|MK03_MOUSE Mitogen-activated protein kinase 3 (Extracellular signal-regulated
kinase 1) (ERK-1) (Insulin-stimulated MAP2 kinase) (MAP
kinase 1) (MAPK 1) (p44-ERK1) (ERT2) (p44-MAPK)
(Microtubule-associated protein 2 kinase) (MNK1)
Length = 380
Score = 373 bits (958), Expect = e-103
Identities = 171/252 (67%), Positives = 212/252 (84%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL K+Q+LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 122 VQDLMETDLYKLLKSQQLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDL 181
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+R+ DPEHDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 182 KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 241
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ +LG P++ED I+N KAR++++ +KTK W +L+P +D
Sbjct: 242 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINMKARNYLQSLPSKTKVAWAKLFPKSD 301
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP KR+TVE ALA PYL QYY+PTDEPVA PFTF+ ELDDLP E+L
Sbjct: 302 SKALDLLDRMLTFNPNKRITVEEALAHPYLEQYYDPTDEPVAEEPFTFDMELDDLPKERL 361
Query: 723 REMIWERVKYFR 758
+E+I++ F+
Sbjct: 362 KELIFQETARFQ 373
>sp|P27361|MK03_HUMAN Mitogen-activated protein kinase 3 (Extracellular signal-regulated
kinase 1) (ERK-1) (Insulin-stimulated MAP2 kinase) (MAP
kinase 1) (MAPK 1) (p44-ERK1) (ERT2) (p44-MAPK)
(Microtubule-associated protein 2 kinase)
Length = 379
Score = 372 bits (955), Expect = e-103
Identities = 171/252 (67%), Positives = 211/252 (83%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL K+Q+LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 121 VQDLMETDLYKLLKSQQLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDL 180
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+R+ DPEHDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 181 KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 240
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ +LG P++ED I+N KAR++++ +KTK W +L+P +D
Sbjct: 241 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINMKARNYLQSLPSKTKVAWAKLFPKSD 300
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP KR+TVE ALA PYL QYY+PTDEPVA PFTF ELDDLP E+L
Sbjct: 301 SKALDLLDRMLTFNPNKRITVEEALAHPYLEQYYDPTDEPVAEEPFTFAMELDDLPKERL 360
Query: 723 REMIWERVKYFR 758
+E+I++ F+
Sbjct: 361 KELIFQETARFQ 372
>sp|P26696|MK01_XENLA Mitogen-activated protein kinase 1 (Myelin xP42 protein kinase)
(Myelin basic protein kinase) (MBP kinase) (M phase MAP
kinase)
Length = 361
Score = 370 bits (950), Expect = e-102
Identities = 174/252 (69%), Positives = 208/252 (82%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL KTQ LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 107 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDL 166
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+RV DP+HDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 167 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 226
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ +LG P++ED I+N KAR+++ K K PW +L+PNAD
Sbjct: 227 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNAD 286
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP KR+ VEAALA PYL QYY+P+DEPVA PF FE ELDDLP E L
Sbjct: 287 PKALDLLDKMLTFNPHKRIEVEAALAHPYLEQYYDPSDEPVAEAPFKFEMELDDLPKETL 346
Query: 723 REMIWERVKYFR 758
+E+I+E F+
Sbjct: 347 KELIFEETARFQ 358
>sp|P46196|MK01_BOVIN Mitogen-activated protein kinase 1 (Extracellular signal-regulated
kinase 2) (ERK-2) (Mitogen-activated protein kinase 2)
(MAP kinase 2) (MAPK 2) (p42-MAPK) (ERT1)
Length = 360
Score = 370 bits (949), Expect = e-102
Identities = 173/252 (68%), Positives = 208/252 (82%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL KTQ LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 104 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDL 163
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+RV DP+HDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 164 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 223
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ +LG P++ED I+N KAR+++ K K PW +L+PNAD
Sbjct: 224 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNAD 283
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP KR+ VE ALA PYL QYY+P+DEPVA PF F+ ELDDLP EKL
Sbjct: 284 SKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPVAEAPFKFDMELDDLPKEKL 343
Query: 723 REMIWERVKYFR 758
+E+I+E F+
Sbjct: 344 KELIFEETARFQ 355
>sp|P28482|MK01_HUMAN Mitogen-activated protein kinase 1 (Extracellular signal-regulated
kinase 2) (ERK-2) (Mitogen-activated protein kinase 2)
(MAP kinase 2) (MAPK 2) (p42-MAPK) (ERT1)
Length = 360
Score = 369 bits (948), Expect = e-102
Identities = 172/252 (68%), Positives = 208/252 (82%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL KTQ LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 104 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDL 163
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+RV DP+HDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 164 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 223
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ +LG P++ED I+N KAR+++ K K PW +L+PNAD
Sbjct: 224 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNAD 283
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP KR+ VE ALA PYL QYY+P+DEP+A PF F+ ELDDLP EKL
Sbjct: 284 SKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKL 343
Query: 723 REMIWERVKYFR 758
+E+I+E F+
Sbjct: 344 KELIFEETARFQ 355
>sp|P63086|MK01_RAT Mitogen-activated protein kinase 1 (Extracellular signal-regulated
kinase 2) (ERK-2) (Mitogen-activated protein kinase 2)
(MAP kinase 2) (MAPK 2) (p42-MAPK) (ERT1)
sp|P63085|MK01_MOUSE Mitogen-activated protein kinase 1 (Extracellular signal-regulated
kinase 2) (ERK-2) (Mitogen-activated protein kinase 2)
(MAP kinase 2) (MAPK 2) (p42-MAPK) (ERT1)
Length = 358
Score = 369 bits (948), Expect = e-102
Identities = 172/252 (68%), Positives = 208/252 (82%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL KTQ LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 102 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDL 161
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+RV DP+HDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 162 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 221
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ +LG P++ED I+N KAR+++ K K PW +L+PNAD
Sbjct: 222 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNAD 281
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP KR+ VE ALA PYL QYY+P+DEP+A PF F+ ELDDLP EKL
Sbjct: 282 SKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKL 341
Query: 723 REMIWERVKYFR 758
+E+I+E F+
Sbjct: 342 KELIFEETARFQ 353
>sp|P39745|SUR1_CAEEL Mitogen-activated protein kinase mpk-1 (MAP kinase sur-1)
Length = 444
Score = 365 bits (936), Expect = e-100
Identities = 169/256 (66%), Positives = 206/256 (80%), Gaps = 1/256 (0%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL KTQKLS +H+CYFLYQILRGLKYIHSANV+HRDLKPSNLL+N+ CDL
Sbjct: 175 VQCLMETDLYKLLKTQKLSNDHVCYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDL 234
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+RV DP+ DH G LTEYVATRWYRAPEIMLNSKGYTK+ID+WSVGCILAEML+
Sbjct: 235 KICDFGLARVTDPQTDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVWSVGCILAEMLS 294
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+P+FPGKHY++QL LI+ V+G P+ D I+N+KAR ++ K K PW +LYP AD
Sbjct: 295 NRPLFPGKHYLDQLNLILAVVGSPSNADLQCIINDKARSYLISLPHKPKQPWARLYPGAD 354
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
+ +L+ ++TFNP R+ +E ALA PYL QYY+P DEPV PFT E E DDLP EKL
Sbjct: 355 PRALDLLDKMLTFNPHNRIDIEQALAHPYLEQYYDPGDEPVCEEPFTLEMEFDDLPKEKL 414
Query: 723 REMIWERVK-YFRQLE 767
+E+IWE + + R++E
Sbjct: 415 KELIWEEAEAHHRRME 430
>sp|P40417|ERKA_DROME Mitogen-activated protein kinase ERK-A (Extracellular-regulated
kinase A) (Rolled protein)
Length = 376
Score = 359 bits (921), Expect = 6e-99
Identities = 168/253 (66%), Positives = 202/253 (79%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
VQ LMETDL+KL KTQ+LS +HICYFLYQILRGLKYIHSANV+HRDLKPSNLL+N CDL
Sbjct: 117 VQCLMETDLYKLLKTQRLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNKTCDL 176
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
KICDFGL+R+ DPEHDH G LTEYVATRWYRAPEIMLNSKGYTK+IDIWSVGCILAEML+
Sbjct: 177 KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 236
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
+PIFPGKHY++QL I+ VLG P+ +D I+NEKAR+++E K PW +L+PNAD
Sbjct: 237 NRPIFPGKHYLDQLNHILGVLGSPSRDDLECIINEKARNYLESLPFKPNVPWAKLFPNAD 296
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVASTPFTFEHELDDLPIEKL 722
L + +L ++TFNP KR+ VE ALA PYL QYY+P DEPVA PF E DD+ + L
Sbjct: 297 ALALDLLGKMLTFNPHKRIPVEEALAHPYLEQYYDPGDEPVAEVPFRINMENDDISRDAL 356
Query: 723 REMIWERVKYFRQ 761
+ +I+E F++
Sbjct: 357 KSLIFEETLKFKE 369
>sp|Q00859|MAPK_FUSSO Mitogen-activated protein kinase (FsMAPK)
Length = 355
Score = 296 bits (757), Expect = 6e-80
Identities = 142/252 (56%), Positives = 183/252 (72%), Gaps = 4/252 (1%)
Frame = +3
Query: 3 VQALMETDLHKLCKTQKLSFEHICYFLYQILRGLKYIHSANVIHRDLKPSNLLVNSNCDL 182
+Q LMETD+H+ +TQ LS +H YF+YQ LR LK +HSANV+HRDLKPSNLL+N+NCDL
Sbjct: 102 IQELMETDMHRAIRTQDLSDDHCQYFIYQTLRALKAMHSANVLHRDLKPSNLLLNANCDL 161
Query: 183 KICDFGLSRVNDPEHDHKGILTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLN 362
K+CDFGL+R + D+ G +TEYVATRWYRAPEIML K YTKAID+WSVGCILAEML+
Sbjct: 162 KVCDFGLARSAASQEDNSGFMTEYVATRWYRAPEIMLTFKEYTKAIDVWSVGCILAEMLS 221
Query: 363 GKPIFPGKHYVEQLTLIITVLGYPTEEDKAWIVNEKARHFVEKFVTKTKTPWKQLYPNAD 542
GKP+FPGK Y QLTLI+ VLG PT ED I + +AR ++ K K P++ L+P
Sbjct: 222 GKPLFPGKDYHHQLTLILDVLGTPTMEDYYGIKSRRAREYIRSLPFKKKVPFRTLFPKTS 281
Query: 543 DLCIQMLEGLMTFNPGKRLTVEAALAMPYLSQYYEPTDEPVA----STPFTFEHELDDLP 710
DL + +LE L+ FNP KR+TVE AL PYL Y++P DEP A F F+ D+L
Sbjct: 282 DLALDLLEKLLAFNPVKRITVEEALKHPYLEPYHDPEDEPTAPPIPEEFFDFDKHKDNLS 341
Query: 711 IEKLREMIWERV 746
E+L+++I++ +
Sbjct: 342 KEQLKQLIYQEI 353
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,856,754
Number of Sequences: 369166
Number of extensions: 2254999
Number of successful extensions: 9490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8060
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)