Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I04
(715 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 184 3e-46
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 181 2e-45
sp|P49405|RL5_CAEEL 60S ribosomal protein L5 168 1e-41
sp|O65353|RL5_HELAN 60S ribosomal protein L5 163 5e-40
sp|P49227|RL5_ARATH 60S ribosomal protein L5 162 1e-39
sp|O44248|RL5_ANOGA 60S ribosomal protein L5 161 2e-39
sp|Q8L4L4|RL5B_ORYSA 60S ribosomal protein L5-2 160 3e-39
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 159 5e-39
sp|P49625|RL5A_ORYSA 60S ribosomal protein L5-1 159 5e-39
sp|P09895|RL5_RAT 60S ribosomal protein L5 159 7e-39
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 184 bits (466), Expect = 3e-46
Identities = 102/223 (45%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-ID 179
+AY+HELPRYG+K +DE Y G T++DG +E +D
Sbjct: 77 AAYAHELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVD 136
Query: 180 EERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHK 359
+ F A LD GL RT+TGA VFGAMKGA DGGL+IPHS KRFPGY E ++A++H+
Sbjct: 137 GKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHR 196
Query: 360 DRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT 536
IFG HV +M L EE+E F RQFS+YI+ G++ + +EE H AIREDP+P K
Sbjct: 197 SHIFGGHVSNYMKELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPTPKK- 255
Query: 537 EKTPYTG-PKITLKKKMNLLQKRDRIRQIKDTYLAKLRAENQE 662
KT + G K +KKM Q+RDR++Q K ++ LRA+ QE
Sbjct: 256 -KTDFAGKTKRWNRKKMTFSQRRDRVKQKKASF---LRAKQQE 294
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 181 bits (459), Expect = 2e-45
Identities = 99/220 (45%), Positives = 131/220 (59%), Gaps = 3/220 (1%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-ID 179
+AYSHELPRYG+K +D Y G TDV G ++E +D
Sbjct: 77 AAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVD 136
Query: 180 EERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHK 359
F LD GL RT+TG VFGAMKGAVDGGLN+PHS KRFPGY E K+NA++H+
Sbjct: 137 NGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHR 196
Query: 360 DRIFGKHVGEFMSVLE-ENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT 536
IFG HV E+M LE ++E F RQFSKYI+ G++ + IE HEAIR DPS K
Sbjct: 197 AHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKK 256
Query: 537 E-KTPYTGPKITLKKKMNLLQKRDRIRQIKDTYLAKLRAE 653
E K K K+K+ L ++++RI+Q K +++ +L+A+
Sbjct: 257 ELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 296
>sp|P49405|RL5_CAEEL 60S ribosomal protein L5
Length = 293
Score = 168 bits (426), Expect = 1e-41
Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 6/214 (2%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLEIDE 182
SAYSHELPRYGLK +D Y G ++ G+ ++E +
Sbjct: 77 SAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEG 136
Query: 183 ERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKD 362
+R PF AVLD GL RT+TG+ +F MKG DGG+N+PHSE RF G+ +E +YNA+ H+D
Sbjct: 137 DRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRD 196
Query: 363 RIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTE 539
RI GKHV ++M+ L EE+E + RQFSK++ AG++ +N+ T VH AIR D SPA +
Sbjct: 197 RILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKK 256
Query: 540 KTP----YTGPKITL-KKKMNLLQKRDRIRQIKD 626
+T ++T ++K + K+ + Q+K+
Sbjct: 257 AAKPSKRHTAKRLTYDERKQRVADKKALLLQLKE 290
>sp|O65353|RL5_HELAN 60S ribosomal protein L5
Length = 297
Score = 163 bits (412), Expect = 5e-40
Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 2/222 (0%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-ID 179
+AY+HELP+YG+K +D+ Y+G+T+V G+ +++ ++
Sbjct: 77 AAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVE 136
Query: 180 EERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHK 359
+ F LD GL+RT+TGA VFGAMKGAVDGGLNI HS KRFPG+ E ++NAD+H+
Sbjct: 137 DGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHR 196
Query: 360 DRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT 536
IFG+HV E+M L EE++ + RQFS+YI+ G++ + IE HEAIR +P+
Sbjct: 197 QHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPARKTV 256
Query: 537 EKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYLAKLRAENQE 662
K + + T +KK+ Q++ ++ K +L K+ A E
Sbjct: 257 AKKAHPKKRWT-EKKLTREQRQGKVAAAKAEWLKKIEAGEVE 297
>sp|P49227|RL5_ARATH 60S ribosomal protein L5
Length = 301
Score = 162 bits (409), Expect = 1e-39
Identities = 86/207 (41%), Positives = 123/207 (59%), Gaps = 7/207 (3%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLEIDE 182
SAY+HELP+YGL +MD++Y G + G+ +E +
Sbjct: 77 SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136
Query: 183 ERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKD 362
RRPF A+LD GL+RT+TG VFGA+KGA+DGGL+IPHS+KRF G+ KE + +A+IH++
Sbjct: 137 SRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRN 196
Query: 363 RIFGKHVGEFMSVLEENE-AMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTE 539
I+G HV +M +L E+E FS YI+ G+ E+IEE VH AIR +P+ KTE
Sbjct: 197 YIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTE 256
Query: 540 KTP------YTGPKITLKKKMNLLQKR 602
K+ Y K+T +++ N L +R
Sbjct: 257 KSAPKEHKRYNLKKLTYEERKNKLIER 283
>sp|O44248|RL5_ANOGA 60S ribosomal protein L5
Length = 327
Score = 161 bits (407), Expect = 2e-39
Identities = 88/189 (46%), Positives = 110/189 (58%), Gaps = 4/189 (2%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-ID 179
+AYSHELPRYG+K +D Y G TDV G+ +E +D
Sbjct: 77 AAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVD 136
Query: 180 EERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHK 359
E F LD GL RT+TG+ VFGAMKGAVDGGLNIPHS KRFPGYS E +NA++H+
Sbjct: 137 EGPAAFRCYLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHR 196
Query: 360 DRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT 536
D IFG HV +M L EE+E F RQFSKYI GI ++IE H +IR+ P +
Sbjct: 197 DHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRKIPPSRRN 256
Query: 537 --EKTPYTG 557
++P +G
Sbjct: 257 PRRRSPRSG 265
>sp|Q8L4L4|RL5B_ORYSA 60S ribosomal protein L5-2
Length = 304
Score = 160 bits (405), Expect = 3e-39
Identities = 84/194 (43%), Positives = 118/194 (60%), Gaps = 2/194 (1%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLEIDE 182
+AYSHELPRYGL+ +D++Y G + G+ +E +
Sbjct: 78 AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPAD 137
Query: 183 ERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKD 362
ERRPF A+LD GL+RT+TG VFGA+KGA+DGGL+IPHS+KRF G+ K+ + ++DIH+
Sbjct: 138 ERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRK 197
Query: 363 RIFGKHVGEFM-SVLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAK-T 536
I+G HV ++M S+ EE F FS+Y++ GI + +E VH AIR DP+ AK T
Sbjct: 198 YIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKST 257
Query: 537 EKTPYTGPKITLKK 578
+K P T + LKK
Sbjct: 258 KKEPATHKRYNLKK 271
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 159 bits (403), Expect = 5e-39
Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-ID 179
+AY+HELP+YG+K +D+ Y G +V G ++E ID
Sbjct: 77 AAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESID 136
Query: 180 EERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHK 359
E FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++N ++H+
Sbjct: 137 GEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHR 196
Query: 360 DRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT 536
IF ++V E+M +L EE+E + +QFS+YI+ G++ + +E+ H IRE+P K
Sbjct: 197 KHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKK 256
Query: 537 EKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 635
K K + K++L QK+DR+ Q K ++L
Sbjct: 257 PKKE-VKKKRWNRAKLSLEQKKDRVAQKKASFL 288
>sp|P49625|RL5A_ORYSA 60S ribosomal protein L5-1
Length = 304
Score = 159 bits (403), Expect = 5e-39
Identities = 84/194 (43%), Positives = 118/194 (60%), Gaps = 2/194 (1%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLEIDE 182
+AYSHELPRYGL+ +D++Y G + G+ +E +
Sbjct: 78 AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPAD 137
Query: 183 ERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKD 362
ERRPF A+LD GL+RT+TG VFGA+KGA+DGGL+IPHS+KRF G+ K+ + ++DIH+
Sbjct: 138 ERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRK 197
Query: 363 RIFGKHVGEFM-SVLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAK-T 536
I+G HV ++M S+ EE F FS+Y++ GI + +E VH AIR DP+ AK T
Sbjct: 198 YIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKST 257
Query: 537 EKTPYTGPKITLKK 578
+K P T + LKK
Sbjct: 258 KKEPATHKRYNLKK 271
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 159 bits (402), Expect = 7e-39
Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +3
Query: 3 SAYSHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-ID 179
+AY+HELP+YG+K MD+ Y G +V+G ++E ID
Sbjct: 77 AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESID 136
Query: 180 EERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHK 359
+ FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+
Sbjct: 137 GQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHR 196
Query: 360 DRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT 536
I G++V ++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P K
Sbjct: 197 KHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKK 256
Query: 537 EKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 635
K K + KM+L QK+DR+ Q K ++L
Sbjct: 257 PKRE-VKKKRWNRPKMSLAQKKDRVAQKKASFL 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,131,036
Number of Sequences: 369166
Number of extensions: 1536286
Number of successful extensions: 5762
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5686
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)