Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I03
(817 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa pr... 117 5e-26
sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa pr... 116 8e-26
sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa pr... 113 5e-25
sp|Q20822|SRP68_CAEEL Probable signal recognition particle ... 109 1e-23
sp|Q9VSS2|SRP68_DROME Probable signal recognition particle ... 109 1e-23
sp|Q6IDD9|SARM1_DROME Sterile alpha and TIR motif containin... 33 0.72
sp|P25446|TNR6_MOUSE Tumor necrosis factor receptor superfa... 33 0.93
sp|P36621|CAP_SCHPO Adenylyl cyclase-associated protein (CAP) 33 0.93
sp|O54239|FLIF_RHIME Flagellar M-ring protein 32 2.1
sp|P29511|TBA6_ARATH Tubulin alpha-6 chain 31 4.6
>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein (SRP68)
Length = 625
Score = 117 bits (292), Expect = 5e-26
Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 13/284 (4%)
Frame = +3
Query: 3 SVRDDLKNSSMPNNPAQITNLNLET--MSRLQILFVYLHYVKLTKTVERN---------- 146
+VR++LK P+ + L+ E+ +S LQ L YL Y+KL+ + RN
Sbjct: 349 AVREELK----PDQKQRDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRA 404
Query: 147 LLIIENNMDTSAS-KPQNMARLYDTVMQNLQEMAGLSGLNRESNDNNAQQEIQAKISAYT 323
LL + D+ S +PQ++ RLYD ++QNL E+ L GL D Q+EI K +
Sbjct: 405 LLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQLPGLEE---DRTFQKEISLKTLVFK 461
Query: 324 AYRCYYLSQAHLLMKRFAECTALLTRTLRHCENALSNLKLIGNTESESGVSVTKRLIPGP 503
AYRC++++Q+++L+K+++E L R L++ N S G + L P
Sbjct: 462 AYRCFFIAQSYVLVKKWSEALVLYDRVLKY-----------ANEVSSHGGASKNSLKDLP 510
Query: 504 SVKEMMEKINSLIESISADQLICRADRCLSMIDDASIENCPASENIELPLAKRLDEFVED 683
V+E++ ++ S S+ A ++ D S D S + +N PL +R + F D
Sbjct: 511 DVQELITQVRSEKCSLQAAAILDAND---SHQTDTSYQ---VKDN--TPLVERFESFCLD 562
Query: 684 PYLSQKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSL 815
P L K ++ L+ P F+PIP KP+FFDLA HV FP L
Sbjct: 563 PSLVTKQAN-----LVHFPPGFQPIPCKPLFFDLALNHVAFPPL 601
>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein (SRP68)
Length = 627
Score = 116 bits (290), Expect = 8e-26
Identities = 80/257 (31%), Positives = 127/257 (49%), Gaps = 11/257 (4%)
Frame = +3
Query: 78 MSRLQILFVYLHYVKLTKTVERN----------LLIIENNMDTSAS-KPQNMARLYDTVM 224
+S LQ L YL Y+KL+ ++RN LL + D+ S +PQ++ RLYD ++
Sbjct: 373 VSNLQYLHSYLTYIKLSTAIKRNENMAKGLQRALLQQQPEDDSKRSPRPQDLIRLYDIIL 432
Query: 225 QNLQEMAGLSGLNRESNDNNAQQEIQAKISAYTAYRCYYLSQAHLLMKRFAECTALLTRT 404
QNL E+ L GL D Q+EI K + AYRC++++Q+++L+K+++E L R
Sbjct: 433 QNLVELLQLPGLEE---DKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRV 489
Query: 405 LRHCENALSNLKLIGNTESESGVSVTKRLIPGPSVKEMMEKINSLIESISADQLICRADR 584
L++ S+ N S+K++ + + LI + +++ +A
Sbjct: 490 LKYANEVNSDAGAFKN-----------------SLKDLPD-VQELITQVRSEKCSLQAAA 531
Query: 585 CLSMIDDASIENCPASENIELPLAKRLDEFVEDPYLSQKTSSQSTGRLIQTCPEFEPIPV 764
L D E + PL +R + F DP L K ++ L+ P F+PIP
Sbjct: 532 ILDANDAHQTETSSSQVKDNKPLVERFETFCLDPSLVTKQAN-----LVHFPPGFQPIPC 586
Query: 765 KPVFFDLAFYHVKFPSL 815
KP+FFDLA HV FP L
Sbjct: 587 KPLFFDLALNHVAFPPL 603
>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein (SRP68)
Length = 622
Score = 113 bits (283), Expect = 5e-25
Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 15/286 (5%)
Frame = +3
Query: 3 SVRDDLKNSSMPNNPAQITNLNLET--MSRLQILFVYLHYVKLTKTVERNLLIIEN---- 164
+VR++LK P+ + L+ E+ +S LQ L YL Y+KL+ + RN + +
Sbjct: 347 AVREELK----PDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKA 402
Query: 165 ------NMDTSASKPQNMARLYDTVMQNLQEMAGLSGLNRESNDNNAQQEIQAKISAYTA 326
+ + +PQ++ RLYD ++QNL E+ L GL D Q+EI K + A
Sbjct: 403 LQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQLPGLEE---DRAFQKEIGLKTLVFKA 459
Query: 327 YRCYYLSQAHLLMKRFAECTALLTRTLRHCENALSNLKLIGNTESESGVSVTKRLIPGPS 506
YRC++++Q+++L+K+++E L R L++ S+ N+ + P
Sbjct: 460 YRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL-----------PD 508
Query: 507 VKEMMEKINSLIESISADQLICRADRCLSMIDDASIENCPASEN---IELPLAKRLDEFV 677
V+E++ ++ S S+ A ++ DAS + P + + PL +R + F
Sbjct: 509 VQELITQVRSEKCSLQAAAIL-----------DASDSHQPETSSQVKDNKPLVERFETFC 557
Query: 678 EDPYLSQKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSL 815
DP L K ++ L+ P F+PIP KP+FFDLA HV FP L
Sbjct: 558 LDPSLVTKQAN-----LVHFPPGFQPIPCKPLFFDLALNHVAFPPL 598
>sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein (SRP68)
Length = 622
Score = 109 bits (272), Expect = 1e-23
Identities = 68/243 (27%), Positives = 124/243 (51%)
Frame = +3
Query: 87 LQILFVYLHYVKLTKTVERNLLIIENNMDTSASKPQNMARLYDTVMQNLQEMAGLSGLNR 266
LQ + YL ++K+ T R L II+N SKPQ++ RLYD+V++ +E+A + G +
Sbjct: 341 LQSIKAYLEFLKMNGTASRYLAIIDNTKSEKKSKPQDLLRLYDSVIEIYKEVAEIPGAD- 399
Query: 267 ESNDNNAQQEIQAKISAYTAYRCYYLSQAHLLMKRFAECTALLTRTLRHCENALSNLKLI 446
+D N Q + K+ Y A+RC+Y++ ++ + +++E AL RT+ ++A LK +
Sbjct: 400 --HDKNLIQAFEVKVEYYRAFRCFYMASSYSALHKYSEAAALFDRTVSRVQDAEGKLKKL 457
Query: 447 GNTESESGVSVTKRLIPGPSVKEMMEKINSLIESISADQLICRADRCLSMIDDASIENCP 626
+S S ++ E +N L + + ++ RA R S D ++
Sbjct: 458 ---KSSSFIT-----------NETQSSLNELRSEVESAKVTVRAARLASAAGDVKTDSEL 503
Query: 627 ASENIELPLAKRLDEFVEDPYLSQKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKF 806
A + PL + ++E+ + + + T + P F P+P KP+FFDLA +H+
Sbjct: 504 AKIIDKRPLLETVNEWRQWD-VRNSLKDKKTIPVASLPPAFIPMPNKPIFFDLANFHLTM 562
Query: 807 PSL 815
P++
Sbjct: 563 PNV 565
>sp|Q9VSS2|SRP68_DROME Probable signal recognition particle 68 kDa protein (SRP68)
Length = 604
Score = 109 bits (272), Expect = 1e-23
Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 17/288 (5%)
Frame = +3
Query: 3 SVRDDLKNSSMPNNPAQITNLNLETMSRLQILFVYLHYVKLTKTVERNLLIIE------- 161
+VRD++K +P + +T+S +Q L YL Y++ ++T++RNL ++E
Sbjct: 322 AVRDEIKQ-----DPKLRSLTTGQTVSGVQYLLAYLSYIRHSRTLQRNLCLVEQAKLNFY 376
Query: 162 --------NNMDTSASKPQNMARLYDTVMQNLQEMAGLSGLNRESNDNNAQQEIQAKISA 317
N D +PQ++ARLY+ ++QN+ EM ++GL +D Q E++
Sbjct: 377 DPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQINGLE---DDATYQSEVENLAIT 433
Query: 318 YTAYRCYYLSQAHLLMKRFAECTALLTRTLRHCENALSNLKLIGNTESESGVSVTKRLIP 497
+ A+RCYY++ + +K++ E AL R + AL G + E
Sbjct: 434 FKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALK-----GKSSPEF---------- 478
Query: 498 GPSVKEMMEKINSLIESISADQLICRADRCLSMIDDASIEN--CPASENIELPLAKRLDE 671
++ E++ ++ +I + A L DD S E+ S+ PL +RL
Sbjct: 479 -----QLQEELKKVVSAIDGCKFSAHAYSVLE--DDNSEESGTTTKSQKTTKPLYERLSL 531
Query: 672 FVEDPYLSQKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSL 815
+ ED L K + + + P+ EPIP KP+FFDLA +V+ PSL
Sbjct: 532 YKEDQSLHTKAPN-----VFKLTPDMEPIPCKPIFFDLAMTYVELPSL 574
>sp|Q6IDD9|SARM1_DROME Sterile alpha and TIR motif containing protein 1 (Tir-1 homolog)
Length = 1360
Score = 33.5 bits (75), Expect = 0.72
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 378 ECTALLTRTLRHCENALSNLKLIGNTESESGVSVTK 485
EC TLRHC +AL+NL L G E++ + + K
Sbjct: 497 ECRTSDLETLRHCASALANLSLYGGAENQEEMILRK 532
>sp|P25446|TNR6_MOUSE Tumor necrosis factor receptor superfamily member 6 precursor (FASL
receptor) (Apoptosis-mediating surface antigen FAS)
(Apo-1 antigen) (CD95 antigen)
Length = 327
Score = 33.1 bits (74), Expect = 0.93
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 324 QCTLRFSLESPA-EHCYRCSHDSIRTIPPFPASSASRCRTISP 199
+C F +SP EHC RC+ T+ P A+S + CR SP
Sbjct: 124 KCKPDFYCDSPGCEHCVRCASCEHGTLEPCTATSNTNCRKQSP 166
>sp|P36621|CAP_SCHPO Adenylyl cyclase-associated protein (CAP)
Length = 551
Score = 33.1 bits (74), Expect = 0.93
Identities = 27/107 (25%), Positives = 47/107 (43%)
Frame = +3
Query: 234 QEMAGLSGLNRESNDNNAQQEIQAKISAYTAYRCYYLSQAHLLMKRFAECTALLTRTLRH 413
Q A +S NR +A + + A ISAY + YLS+ L K+ L+ H
Sbjct: 81 QVAAAISPRNRSLTSTSAVEAVPASISAYDEFCSKYLSKYMELSKKIG---GLIAEQSEH 137
Query: 414 CENALSNLKLIGNTESESGVSVTKRLIPGPSVKEMMEKINSLIESIS 554
E A + L+ + + + K + P + E ++ I S + +I+
Sbjct: 138 VEKAFNLLRQVLSV----ALKAQKPDMDSPELLEFLKPIQSELLTIT 180
>sp|O54239|FLIF_RHIME Flagellar M-ring protein
Length = 557
Score = 32.0 bits (71), Expect = 2.1
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 135 VERNLLIIENNMDTSASKPQNMARLYDTVMQNLQEMAGLSGLNRESNDNNAQQEIQ 302
VER+ +I+ +S +P N A TV QN+ + A G ++S+D ++E Q
Sbjct: 284 VERSTRVIKEEQKSSQQQPDNAA----TVQQNVPQAAPRGGAGQQSSDEAEKKEEQ 335
>sp|P29511|TBA6_ARATH Tubulin alpha-6 chain
Length = 450
Score = 30.8 bits (68), Expect = 4.6
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +3
Query: 495 PGPSVK-EMMEKINSLIESISADQLICRADRCLSMIDDASIENCPASENIELPLAKRLDE 671
P P V ++E NS++ S L+ D + + ++A + C S NIE P L+
Sbjct: 173 PSPQVSTSVVEPYNSVL---STHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNR 229
Query: 672 FVEDPYLSQKTSSQSTGRLIQTCPEFEP--IPVKPVFFDLAFY 794
V S S + G L EF+ +P + F L+ Y
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,346,079
Number of Sequences: 369166
Number of extensions: 1989298
Number of successful extensions: 6743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6725
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)