Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H23
(585 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3 89 8e-18
sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (He... 89 8e-18
sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10 89 8e-18
sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DE... 89 8e-18
sp|O15523|DDX3Y_HUMAN DEAD-box protein 3, Y-chromosomal 88 2e-17
sp|Q6GVM6|DDX3Y_PANTR DEAD-box protein 3, Y-chromosomal 88 2e-17
sp|Q5RF43|DDX3Y_PONPY DEAD-box protein 3, Y-chromosomal 88 2e-17
sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DE... 87 2e-17
sp|P24784|DBP1_YEAST Probable ATP-dependent RNA helicase DB... 82 1e-15
sp|P06634|DED1_YEAST Probable ATP-dependent RNA helicase DED1 80 3e-15
>sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3
Length = 697
Score = 89.0 bits (219), Expect = 8e-18
Identities = 45/48 (93%), Positives = 45/48 (93%)
Frame = +1
Query: 4 SPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 533 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 580
Score = 37.7 bits (86), Expect = 0.021
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWLYEKLNELKHIKQFRSQQKMA-PKRFGGKDYRQ 296
L+++L EA+QEVP WL E H R + K FG KDYRQ
Sbjct: 597 LLDLLVEAKQEVPSWLENMAYEQHHKSSSRGRSKSRFSGGFGAKDYRQ 644
>sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2)
(DEAD-box, X isoform)
Length = 662
Score = 89.0 bits (219), Expect = 8e-18
Identities = 45/48 (93%), Positives = 45/48 (93%)
Frame = +1
Query: 4 SPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539
Score = 34.7 bits (78), Expect = 0.18
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWLYEKLNE--LKHIKQFRSQQKMAPKRFGGKDYRQ 296
L+++L EA+QEVP WL E K + RS+ FG +DYRQ
Sbjct: 556 LLDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSSRFSGGFGARDYRQ 604
>sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10
Length = 660
Score = 89.0 bits (219), Expect = 8e-18
Identities = 45/48 (93%), Positives = 45/48 (93%)
Frame = +1
Query: 4 SPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 538
Score = 32.0 bits (71), Expect = 1.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWLYEKLNELKHIKQFRSQQKMA-PKRFGGKDYRQ 296
L+++L EA+QEVP WL E + R + K FG +DYRQ
Sbjct: 555 LLDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYRQ 602
>sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DEAD-box RNA helicase DEAD3)
(mDEAD3) (Embryonic RNA helicase) (D1Pas1-related
sequence 2)
Length = 662
Score = 89.0 bits (219), Expect = 8e-18
Identities = 45/48 (93%), Positives = 45/48 (93%)
Frame = +1
Query: 4 SPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
SPILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539
Score = 34.3 bits (77), Expect = 0.23
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWLYEKLNE--LKHIKQFRSQQKMAPKRFGGKDYRQ 296
L+++L EA+QEVP WL E K + RS+ FG +DYRQ
Sbjct: 556 LLDLLVEAKQEVPSWLENMAFEHHYKGSSRGRSKSSRFSGGFGARDYRQ 604
>sp|O15523|DDX3Y_HUMAN DEAD-box protein 3, Y-chromosomal
Length = 660
Score = 87.8 bits (216), Expect = 2e-17
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1
Query: 4 SPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
SPILVATAVAARGLDI NV+ VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 490 SPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLG 537
Score = 34.3 bits (77), Expect = 0.23
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWLYEKLNELKHIK---QFRSQQKMAPKRFGGKDYRQ 296
L+++L EA+QEVP WL E + H K + RS+ FG +DYRQ
Sbjct: 554 LLDLLVEAKQEVPSWL-ENMAYEHHYKGGSRGRSKSNRFSGGFGARDYRQ 602
>sp|Q6GVM6|DDX3Y_PANTR DEAD-box protein 3, Y-chromosomal
Length = 660
Score = 87.8 bits (216), Expect = 2e-17
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1
Query: 4 SPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
SPILVATAVAARGLDI NV+ VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 490 SPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLG 537
Score = 34.3 bits (77), Expect = 0.23
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWL----YEKLNELKHIKQFRSQQKMAPKRFGGKDYRQ 296
L+++L EA+QEVP WL YE ++ K + RS+ FG +DYRQ
Sbjct: 554 LLDLLVEAKQEVPSWLENMAYE--HQYKGGSRGRSKSNRFSGGFGARDYRQ 602
>sp|Q5RF43|DDX3Y_PONPY DEAD-box protein 3, Y-chromosomal
Length = 658
Score = 87.8 bits (216), Expect = 2e-17
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1
Query: 4 SPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
SPILVATAVAARGLDI NV+ VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 490 SPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLG 537
Score = 36.6 bits (83), Expect = 0.047
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWLYEKLNELKHIKQFRSQQKMAPKRFGGKDYRQ 296
L+++L EA+QEVP WL E + R + K FG +DYRQ
Sbjct: 554 LLDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKRFSGGFGARDYRQ 600
>sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DEAD-box RNA helicase DEAD2)
(mDEAD2) (D1Pas1-related sequence 1)
Length = 658
Score = 87.4 bits (215), Expect = 2e-17
Identities = 44/47 (93%), Positives = 44/47 (93%)
Frame = +1
Query: 7 PILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
PILVATAVAARGLDI NVK VINFDLPSDIEEYVHRIGRTGRVGN G
Sbjct: 492 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 538
Score = 34.7 bits (78), Expect = 0.18
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +3
Query: 156 LVNVLEEAQQEVPGWLYEKLNELKHIKQFRSQQKMA-PKRFGGKDYRQ-------GFPSR 311
L+++L EA+QEVP WL E + R + K FG +DYRQ GF S
Sbjct: 555 LLDLLVEAKQEVPSWLESMAYEHHYKGSSRGRSKSRFSGGFGARDYRQSSGSANAGFNSN 614
Query: 312 MPNS 323
NS
Sbjct: 615 RANS 618
>sp|P24784|DBP1_YEAST Probable ATP-dependent RNA helicase DBP1 (Helicase CA1)
Length = 617
Score = 82.0 bits (201), Expect = 1e-15
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +1
Query: 10 ILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPGESDLSMFWRKHSKK 189
ILVATAVAARGLDIPNV VIN+DLPSDI++YVHRIGRTGR GN G + + F+ +++
Sbjct: 464 ILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVA--TSFFNSNNQN 521
Query: 190 FPGGYM 207
G M
Sbjct: 522 IVKGLM 527
>sp|P06634|DED1_YEAST Probable ATP-dependent RNA helicase DED1
Length = 604
Score = 80.5 bits (197), Expect = 3e-15
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +1
Query: 1 SSPILVATAVAARGLDIPNVKLVINFDLPSDIEEYVHRIGRTGRVGNPG 147
++ +LVATAVAARGLDIPNV VIN+DLPSD+++YVHRIGRTGR GN G
Sbjct: 449 AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTG 497
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,372,590
Number of Sequences: 369166
Number of extensions: 1503928
Number of successful extensions: 4234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4221
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)