Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H16
(446 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36104|SWD2_YEAST COMPASS component SWD2 (Complex protei... 69 4e-12
sp|Q9V3J8|WDS_DROME Will die slowly protein 48 9e-06
sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800 47 1e-05
sp|P49695|PKWA_THECU Probable serine/threonine-protein kina... 45 6e-05
sp|P61964|WDR5_HUMAN WD-repeat protein 5 (BMP2-induced 3-kb... 45 7e-05
sp|Q26544|WS17_SCHMA WD-repeat protein SL1-17 45 7e-05
sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.... 44 1e-04
sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124 44 2e-04
sp|Q7ZUV2|KTNB1_BRARE Katanin p80 WD40-containing subunit B... 42 5e-04
sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40-containing subunit B... 42 6e-04
>sp|P36104|SWD2_YEAST COMPASS component SWD2 (Complex proteins associated with SET1
protein SWD2) (Set1C component SWD2)
Length = 329
Score = 69.3 bits (168), Expect = 4e-12
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Frame = +3
Query: 3 WNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPID---VCFSPDSQ 173
WN L+FS NG+ + + S+ + I DAF G+QL + A P R +D CF+PD +
Sbjct: 204 WNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMREFLDSGSACFTPDGE 263
Query: 174 YLVCGAPDGQLCIWNTEN--KNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNL 347
+++ DG++ IWN + N+V GF + + P +AFNPKY+M +A +
Sbjct: 264 FVLGTDYDGRIAIWNHSDSISNKVLRPQGFIPCVSHETCP-RSIAFNPKYSMFVTADETV 322
Query: 348 TFW 356
F+
Sbjct: 323 DFY 325
>sp|Q9V3J8|WDS_DROME Will die slowly protein
Length = 361
Score = 48.1 bits (113), Expect = 9e-06
Identities = 36/109 (33%), Positives = 51/109 (46%)
Frame = +3
Query: 6 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 185
+A+KFSPNG +A S IKI A+DGK F + + DV +S DS+ LV
Sbjct: 76 SAVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDSRLLVS 131
Query: 186 GAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 332
G+ D L +W + + G S + C FNP+ +I S
Sbjct: 132 GSDDKTLKVWELSTGKSLKTLKGH-------SNYVFCCNFNPQSNLIVS 173
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFS-PDSQYLVCG 188
+KFSPNG+ I + + +K+ D GK L + G ++ I FS +++V G
Sbjct: 247 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANFSVTGGKWIVSG 304
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 335
+ D + IWN ++K V + G T + C A +P +I+SA
Sbjct: 305 SEDNMVYIWNLQSKEVVQKLQGHTDT-------VLCTACHPTENIIASA 346
>sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800
Length = 1258
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Frame = +3
Query: 18 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 197
FSPNG +IA CS +KI D GK L D+ FSPD + L + D
Sbjct: 1112 FSPNGEIIATCSTDQTVKIWDWQQGKCLKTL----TGHTNWVFDIAFSPDGKILASASHD 1167
Query: 198 GQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT--FWSPQID 371
+ IW+ + G H ++ VAF+P +++S + T W+ +
Sbjct: 1168 QTVRIWDVNTGKCHHICIGHTHL-------VSSVAFSPDGEVVASGSQDQTVRIWNVKTG 1220
Query: 372 E 374
E
Sbjct: 1221 E 1221
Score = 39.3 bits (90), Expect = 0.004
Identities = 27/106 (25%), Positives = 48/106 (45%)
Frame = +3
Query: 18 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 197
FSP G+++A C +++ + GK L +I + V V FSPD + L D
Sbjct: 650 FSPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRF-VVFSPDGEILASCGAD 705
Query: 198 GQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 335
+ +W+ + + + G +H + VAF+P ++SA
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEH-------EVFSVAFHPDGETLASA 744
Score = 39.3 bits (90), Expect = 0.004
Identities = 26/111 (23%), Positives = 48/111 (43%)
Frame = +3
Query: 18 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 197
FSP+G ++A C +K+ DG + + V F PD + L + D
Sbjct: 692 FSPDGEILASCGADENVKLWSVRDGVCIKTL----TGHEHEVFSVAFHPDGETLASASGD 747
Query: 198 GQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
+ +W+ ++ + + G HT + CVAF+P ++S+ + T
Sbjct: 748 KTIKLWDIQDGTCLQTLTG--HT-----DWVRCVAFSPDGNTLASSAADHT 791
Score = 37.7 bits (86), Expect = 0.012
Identities = 29/111 (26%), Positives = 53/111 (47%)
Frame = +3
Query: 18 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 197
FSP+ +++A SN +K+ D GK +S+ L + + + FSPDSQ L + D
Sbjct: 944 FSPDRQILASGSNDKTVKLWDWQTGKYISS---LEGHTDFI-YGIAFSPDSQTLASASTD 999
Query: 198 GQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
+ +WN ++ +HT + V F+P+ +I++ + T
Sbjct: 1000 SSVRLWNISTGQCFQIL--LEHT-----DWVYAVVFHPQGKIIATGSADCT 1043
Score = 37.4 bits (85), Expect = 0.015
Identities = 30/112 (26%), Positives = 55/112 (49%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
++ FSP+G+ +A S +++ + G+ L + G +P V FSPD Q L G
Sbjct: 899 SVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWY--GNTDWALP--VAFSPDRQILASG 954
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTN 344
+ D + +W+ + ++ + G HT I +AF+P ++SA T+
Sbjct: 955 SNDKTVKLWDWQTGKYISSLEG--HT-----DFIYGIAFSPDSQTLASASTD 999
Score = 32.3 bits (72), Expect = 0.49
Identities = 26/114 (22%), Positives = 51/114 (44%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
A+ F P G++IA S +K+ + G+ L L + ++ + + +SPD Q L
Sbjct: 1025 AVVFHPQGKIIATGSADCTVKLWNISTGQCLKT---LSEHSDKI-LGMAWSPDGQLLASA 1080
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
+ D + +W+ V ++ G S + F+P +I++ T+ T
Sbjct: 1081 SADQSVRLWDCCTGRCVGILRGH-------SNRVYSAIFSPNGEIIATCSTDQT 1127
Score = 30.8 bits (68), Expect = 1.4
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
++ F P+G +A S IK+ D DG L L + V V FSPD L
Sbjct: 731 SVAFHPDGETLASASGDKTIKLWDIQDGTCLQT---LTGHTDWVRC-VAFSPDGNTLASS 786
Query: 189 APDGQLCIWN 218
A D + +W+
Sbjct: 787 AADHTIKLWD 796
Score = 29.6 bits (65), Expect = 3.2
Identities = 28/114 (24%), Positives = 52/114 (45%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
++ +SP+ +++ +GS + I +D + L + V V FSPD Q L C
Sbjct: 857 SIAYSPDSKILV---SGSGDRTIKLWDCQTHICIKTLHGHTNEV-CSVAFSPDGQTLACV 912
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
+ D + +WN + L A + +T + VAF+P +++S + T
Sbjct: 913 SLDQSVRLWNC--RTGQCLKAWYGNTDWALP-----VAFSPDRQILASGSNDKT 959
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
Length = 742
Score = 45.4 bits (106), Expect = 6e-05
Identities = 29/108 (26%), Positives = 53/108 (49%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
A+ FSP+G ++A S+ + +++ D ++ + F +D+ FSPD + G
Sbjct: 506 AVAFSPDGALLASGSDDATVRLWDVAAAEERAVF----EGHTHYVLDIAFSPDGSMVASG 561
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 332
+ DG +WN A++ G HT + VAF+P +M++S
Sbjct: 562 SRDGTARLWNVATGTEHAVLKG--HT-----DYVYAVAFSPDGSMVAS 602
Score = 44.3 bits (103), Expect = 1e-04
Identities = 33/114 (28%), Positives = 56/114 (49%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
A+ FSP+G M+A S I++ D GK+ +L A + V + + FSPD LV G
Sbjct: 590 AVAFSPDGSMVASGSRDGTIRLWDVATGKERD---VLQAPAENV-VSLAFSPDGSMLVHG 645
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
+ D + +W+ + + HT + + VAF+P A+++S + T
Sbjct: 646 S-DSTVHLWDVASGEAL-------HTFEGHTDWVRAVAFSPDGALLASGSDDRT 691
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/109 (28%), Positives = 53/109 (48%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
+L FSP+G M+ + + S + + D G+ L F + V V FSPD L G
Sbjct: 632 SLAFSPDGSML-VHGSDSTVHLWDVASGEALHTFE---GHTDWVRA-VAFSPDGALLASG 686
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 335
+ D + +W+ + + G HT +P++ VAF+P+ ++SA
Sbjct: 687 SDDRTIRLWDVAAQEEHTTLEG--HT-----EPVHSVAFHPEGTTLASA 728
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +3
Query: 135 RVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPK 314
R + V FSP L G+ D + +W+ + + + HT + + VAF+P
Sbjct: 460 REAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDEL-------HTLEGHTDWVRAVAFSPD 512
Query: 315 YAMISSAVTNLT 350
A+++S + T
Sbjct: 513 GALLASGSDDAT 524
Score = 28.9 bits (63), Expect = 5.4
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
A+ FSP+G ++A +GS + I +D L + + V V F P+ L
Sbjct: 673 AVAFSPDGALLA---SGSDDRTIRLWDVAAQEEHTTLEGHTEPVH-SVAFHPEGTTLASA 728
Query: 189 APDGQLCIW 215
+ DG + IW
Sbjct: 729 SEDGTIRIW 737
>sp|P61964|WDR5_HUMAN WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
sp|P61965|WDR5_MOUSE WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat
protein BIG-3)
Length = 334
Score = 45.1 bits (105), Expect = 7e-05
Identities = 35/109 (32%), Positives = 51/109 (46%)
Frame = +3
Query: 6 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 185
+++KFSPNG +A S IKI A+DGK F + + DV +S DS LV
Sbjct: 49 SSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 186 GAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 332
+ D L IW+ + + + G S + C FNP+ +I S
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNLIVS 146
Score = 38.9 bits (89), Expect = 0.005
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFS-PDSQYLVCG 188
+KFSPNG+ I + + +K+ D GK L + G ++ I FS +++V G
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTS 281
+ D + IWN + K V + G ST+
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
>sp|Q26544|WS17_SCHMA WD-repeat protein SL1-17
Length = 301
Score = 45.1 bits (105), Expect = 7e-05
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQR-VPIDVCFSPDSQYLVC 185
++ FSP+GR++A S+ QIK+ D DG+ +I N + + V F+ D+++LV
Sbjct: 191 SVSFSPDGRLLASASDDKQIKVFDVRDGR----LVIPSLNGHKGWVVSVDFASDNRHLVT 246
Query: 186 GAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPK 314
+ D + IW+ +K H N+ + C ++P+
Sbjct: 247 ASTDCSVRIWDLASKEE-------KHCFNTHEDQVWCARYSPQ 282
>sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.4 IN chromosome X
Length = 395
Score = 44.3 bits (103), Expect = 1e-04
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +3
Query: 18 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPID-VCFSPDSQYLVCGAP 194
F+P+G +IA S I+I A +G + F I G P+ VCF+ D YL G+
Sbjct: 198 FNPSGTLIASGSFDETIRIWCARNGNTI--FSIPGHED---PVSSVCFNRDGAYLASGSY 252
Query: 195 DGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNP--KYAMISSAVTNLTFWSPQ 365
DG + IW++ V + +H PI V F+P KY + S+ L W Q
Sbjct: 253 DGIVRIWDSTTGTCVKTLIDEEH------PPITHVKFSPNGKYILASNLNNTLKLWDYQ 305
Score = 39.3 bits (90), Expect = 0.004
Identities = 24/109 (22%), Positives = 44/109 (40%)
Frame = +3
Query: 6 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 185
N +S + ++I CS+ +K+ D G+ + CF+P +
Sbjct: 152 NEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLK----GHTNYVFCCCFNPSGTLIAS 207
Query: 186 GAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 332
G+ D + IW N N + + G + P++ V FN A ++S
Sbjct: 208 GSFDETIRIWCARNGNTIFSIPGHE-------DPVSSVCFNRDGAYLAS 249
Score = 31.6 bits (70), Expect = 0.83
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFS-PDSQYLVCG 188
+KFSPNG+ I + + +K+ D + L + G + + FS +++V G
Sbjct: 281 VKFSPNGKYILASNLNNTLKLWDYQKLRVLKEY--TGHENSKYCVAANFSVTGGKWIVSG 338
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 335
+ D ++ IWN + + + + G + + C +P +I+SA
Sbjct: 339 SEDHKVYIWNLQTREILQTLDGH-------NTAVMCTDCHPGQNIIASA 380
>sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124
Length = 1683
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/115 (28%), Positives = 56/115 (48%)
Frame = +3
Query: 6 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 185
N + FSP+G+ +A S+ IK+ D G+ L M L + V I V FSPD Q +
Sbjct: 1159 NNVYFSPDGKNLASASSDHSIKLWDTTSGQLL---MTLTGHSAGV-ITVRFSPDGQTIAA 1214
Query: 186 GAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
G+ D + +W+ ++ + T N +N ++F+P ++SA + T
Sbjct: 1215 GSEDKTVKLWHRQDGKLL-------KTLNGHQDWVNSLSFSPDGKTLASASADKT 1262
Score = 40.0 bits (92), Expect = 0.002
Identities = 33/120 (27%), Positives = 57/120 (47%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGA 191
+ FSP+G++IA S I++ D+F G + + L A+ V V F+PD L +
Sbjct: 1494 VSFSPDGKIIASASADKTIRLWDSFSGNLIKS---LPAHNDLV-YSVNFNPDGSMLASTS 1549
Query: 192 PDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLTFWSPQID 371
D + +W + + + + HT + S + +F+P I+SA + T QID
Sbjct: 1550 ADKTVKLWRSHDGHLL-------HTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIWQID 1602
Score = 38.5 bits (88), Expect = 0.007
Identities = 29/113 (25%), Positives = 52/113 (46%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGA 191
+ F+P G +IA + +KI DGK L ++G + + ++ FSPD + L +
Sbjct: 1410 ISFTPQGDLIASANADKTVKIWRVRDGKALKT--LIGHDNEVNKVN--FSPDGKTLASAS 1465
Query: 192 PDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
D + +WN + F T + + V+F+P +I+SA + T
Sbjct: 1466 RDNTVKLWNVSD-------GKFKKTLKGHTDEVFWVSFSPDGKIIASASADKT 1511
Score = 38.5 bits (88), Expect = 0.007
Identities = 28/115 (24%), Positives = 53/115 (46%)
Frame = +3
Query: 6 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 185
N + FSP+G+ +A S + +K+ + DGK L + V V FSPD + +
Sbjct: 1450 NKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKT---LKGHTDEV-FWVSFSPDGKIIAS 1505
Query: 186 GAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 350
+ D + +W++ + N + + + + V FNP +M++S + T
Sbjct: 1506 ASADKTIRLWDSFSGNLIKSLPAHNDL-------VYSVNFNPDGSMLASTSADKT 1553
Score = 37.0 bits (84), Expect = 0.020
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
++ F+P+G M+A S +K+ + DG L F + V FSPD +Y+
Sbjct: 1535 SVNFNPDGSMLASTSADKTVKLWRSHDGHLLHTF----SGHSNVVYSSSFSPDGRYIASA 1590
Query: 189 APDGQLCIWNTE 224
+ D + IW +
Sbjct: 1591 SEDKTVKIWQID 1602
Score = 35.8 bits (81), Expect = 0.044
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +3
Query: 6 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 185
N+L FSP+G+ +A S IK+ DGK + + G N DV FS D + +
Sbjct: 1243 NSLSFSPDGKTLASASADKTIKLWRIADGKLVKT--LKGHNDS--VWDVNFSSDGKAIAS 1298
Query: 186 GAPDGQLCIWN 218
+ D + +WN
Sbjct: 1299 ASRDNTIKLWN 1309
Score = 35.0 bits (79), Expect = 0.075
Identities = 30/109 (27%), Positives = 48/109 (44%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
++ S +G+ IA S IK+ DG+ F L + V V FSPD Q + G
Sbjct: 1077 SISISRDGQTIASGSLDKTIKLWSR-DGRL---FRTLNGHEDAV-YSVSFSPDGQTIASG 1131
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 335
D + +W T + + + G + T +N V F+P ++SA
Sbjct: 1132 GSDKTIKLWQTSDGTLLKTITGHEQT-------VNNVYFSPDGKNLASA 1173
Score = 33.9 bits (76), Expect = 0.17
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +3
Query: 18 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 197
FSP+GR IA S +KI DG L+ Q + FSPD + L+ G+ D
Sbjct: 1580 FSPDGRYIASASEDKTVKIWQ-IDGHLLTTL----PQHQAGVMSAIFSPDGKTLISGSLD 1634
Query: 198 GQLCIWNTENK 230
IW +++
Sbjct: 1635 TTTKIWRFDSQ 1645
Score = 33.1 bits (74), Expect = 0.29
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGA 191
++FSP+G+ IA S +K+ DGK L L + V + FSPD + L +
Sbjct: 1203 VRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKT---LNGHQDWVN-SLSFSPDGKTLASAS 1258
Query: 192 PDGQLCIWNTENKNRVALVAG 254
D + +W + V + G
Sbjct: 1259 ADKTIKLWRIADGKLVKTLKG 1279
>sp|Q7ZUV2|KTNB1_BRARE Katanin p80 WD40-containing subunit B1 homolog
Length = 694
Score = 42.4 bits (98), Expect = 5e-04
Identities = 30/111 (27%), Positives = 51/111 (45%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGA 191
L FSP+G+ +A S+ S +K+ D GK ++ F ++ V + V F P+ L G+
Sbjct: 153 LAFSPDGKWLASASDDSTVKLWDLIAGKMITEFT---SHTSAVNV-VQFHPNEYLLASGS 208
Query: 192 PDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTN 344
D + +W+ E N + G + + V FNP + + S N
Sbjct: 209 ADRTVKLWDLEKFNMIGSSEG-------ETGVVRSVLFNPDGSCLYSGSEN 252
Score = 33.9 bits (76), Expect = 0.17
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 156 FSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 335
F P +YL G+ D + +W+ K V G HT Q + C+AF+P ++SA
Sbjct: 113 FHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKG--HT-----QAVRCLAFSPDGKWLASA 165
Query: 336 VTNLT 350
+ T
Sbjct: 166 SDDST 170
Score = 32.3 bits (72), Expect = 0.49
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = +3
Query: 6 NALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVC 185
++L F P G +A S S IK+ +D ++ + Q V + FSPD ++L
Sbjct: 109 SSLDFHPMGEYLASGSVDSNIKL---WDVRRKGCVFRYKGHTQAVRC-LAFSPDGKWLAS 164
Query: 186 GAPDGQLCIWNTENKNRVALVAGFDHTP-NSTSQPINCVAFNPKYAMISSAVTNLT 350
+ D + +W+ L+AG T S + +N V F+P +++S + T
Sbjct: 165 ASDDSTVKLWD--------LIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRT 212
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1)
(p80 katanin)
Length = 657
Score = 42.0 bits (97), Expect = 6e-04
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +3
Query: 12 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVC-FSPDSQYLVCG 188
L+FSP+G+ +A ++ +K+ D GK + F P++V F P L G
Sbjct: 152 LRFSPDGKWLASAADDHTVKLWDLTAGKVMFEF-----TGHSGPVNVVEFHPSEYLLASG 206
Query: 189 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNP 311
+ D + W+ E + V+ + + P+ C+ FNP
Sbjct: 207 SSDRTIRFWDLEKFHVVSCI-------EEEATPVRCILFNP 240
Score = 35.0 bits (79), Expect = 0.075
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Frame = +3
Query: 9 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 188
+L F P G +A S + IK+ +D ++ ++ Q V + FSPD ++L
Sbjct: 109 SLDFHPYGSFVASGSLDTDIKL---WDVRRKGCIFKYKSHTQAVRC-LRFSPDGKWLASA 164
Query: 189 APDGQLCIWNTENKNRVALVAG---FDHTPNSTSQPINCVAFNPKYAMISSAVTNLT--F 353
A D + +W+ L AG F+ T +S P+N V F+P +++S ++ T F
Sbjct: 165 ADDHTVKLWD--------LTAGKVMFEFTGHSG--PVNVVEFHPSEYLLASGSSDRTIRF 214
Query: 354 W 356
W
Sbjct: 215 W 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,967,861
Number of Sequences: 369166
Number of extensions: 1114137
Number of successful extensions: 3774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3644
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)