Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H09
(830 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17126|ACT_HYDAT Actin, non-muscle 6.2 519 e-147
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 518 e-146
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 516 e-146
sp|P41113|ACT3_PODCA Actin-3 516 e-146
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 515 e-146
sp|P53464|ACTM_HELTB Actin, cytoskeletal (M) 515 e-146
sp|Q26065|ACT_PLAMG Actin, adductor muscle 515 e-146
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 514 e-146
sp|P53463|ACTM_HELER Actin, cytoskeletal (M) 514 e-146
sp|P30163|ACT2_ONCVO Actin-2 514 e-146
>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
Length = 376
Score = 519 bits (1336), Expect = e-147
Identities = 255/276 (92%), Positives = 259/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKLSYVAL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLSYVALDFEQEMQTAASSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPETLFQPSFIG+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC 286
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 518 bits (1333), Expect = e-146
Identities = 253/276 (91%), Positives = 258/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL YVAL F++EMHTA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAATSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPE +FQPSF+G+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPEAVFQPSFLGMESAGIHETTYNSIMKC 286
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 516 bits (1329), Expect = e-146
Identities = 253/276 (91%), Positives = 257/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL YVAL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPE LFQPSF+G+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPEALFQPSFLGMEAAGIHETTYNSIMKC 286
>sp|P41113|ACT3_PODCA Actin-3
Length = 376
Score = 516 bits (1328), Expect = e-146
Identities = 252/276 (91%), Positives = 259/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI RLDLAGRDLTDY+
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYM 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL+YVAL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMQTAVTSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPETLFQP+FIG+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKC 286
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 515 bits (1327), Expect = e-146
Identities = 252/276 (91%), Positives = 257/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL YVAL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPE +FQPSF+G+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPEAMFQPSFLGMEAAGIHETTYNSIMKC 286
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
Length = 376
Score = 515 bits (1327), Expect = e-146
Identities = 253/276 (91%), Positives = 257/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL Y AL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYTALDFEQEMATAAASSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPETLFQP+FIG+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKC 286
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 515 bits (1326), Expect = e-146
Identities = 253/276 (91%), Positives = 257/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL YVAL F+ EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPE+LFQPSF+G+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPESLFQPSFLGMESAGIHETTYNSIMKC 286
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 514 bits (1325), Expect = e-146
Identities = 251/276 (90%), Positives = 257/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL YVAL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPE +FQPSF+G+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPEAMFQPSFLGMEAAGIHETTYNSIMKC 286
>sp|P53463|ACTM_HELER Actin, cytoskeletal (M)
Length = 376
Score = 514 bits (1325), Expect = e-146
Identities = 253/276 (91%), Positives = 257/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL Y AL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYSALDFEQEMATAAASSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
IGNERFRCPETLFQP+FIG+E AGIHETTYNSIMKC
Sbjct: 251 IGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKC 286
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 514 bits (1325), Expect = e-146
Identities = 252/276 (91%), Positives = 257/276 (93%)
Frame = +3
Query: 3 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 182
VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 183 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNC 362
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 363 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLTDYL 542
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLTDYL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 190
Query: 543 MKILTERGYSFTTTAEREIVRDIKEKLSYVALSFDEEMHTAXXXXXXXXXXXXPDGQVIT 722
MKILTERGYSFTTTAEREIVRDIKEKL YVAL F++EM TA PDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT 250
Query: 723 IGNERFRCPETLFQPSFIGLECAGIHETTYNSIMKC 830
+GNERFRCPE LFQPSF+G+E AGIHETTYNSIMKC
Sbjct: 251 VGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKC 286
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,496,395
Number of Sequences: 369166
Number of extensions: 1861783
Number of successful extensions: 5239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5092
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)