Planarian EST Database


Dr_sW_008_H06

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_008_H06
         (841 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31009|RS2_DROME  40S ribosomal protein S2 (Strings of pe...   337   2e-92
sp|P49154|RS2_URECA  40S ribosomal protein S2                     330   2e-90
sp|Q90YS3|RS2_ICTPU  40S ribosomal protein S2                     323   5e-88
sp|P15880|RS2_HUMAN  40S ribosomal protein S2 (S4) (LLRep3 p...   321   1e-87
sp|P27952|RS2_RAT  40S ribosomal protein S2 >gi|46397787|sp|...   321   2e-87
sp|O18789|RS2_BOVIN  40S ribosomal protein S2                     319   7e-87
sp|P51403|RS2_CAEEL  40S ribosomal protein S2                     312   8e-85
sp|P46791|RS2_CRIGR  40S ribosomal protein S2                     306   5e-83
sp|O74892|RS2_SCHPO  40S ribosomal protein S2                     306   6e-83
sp|P49688|RS2_ARATH  40S ribosomal protein S2                     298   1e-80
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
          Length = 267

 Score =  337 bits (865), Expect = 2e-92
 Identities = 165/220 (75%), Positives = 186/220 (84%), Gaps = 1/220 (0%)
 Frame = +3

Query: 90  EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQ 266
           ++DSKEW P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL   LKDEVL I PVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 267 KQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNK 446
           KQTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI  AKLSV+PVR+GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 447 LGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATL 626
           +G  HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D YTSA G T TL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216

Query: 627 ENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
            NFAKATY AI +TY YL+PDLW   P    P+  ++ FL
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL 256
>sp|P49154|RS2_URECA 40S ribosomal protein S2
          Length = 278

 Score =  330 bits (847), Expect = 2e-90
 Identities = 165/216 (76%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
 Frame = +3

Query: 102 KEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTR 278
           KEW P TKLGRLVK  K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I PVQKQTR
Sbjct: 44  KEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTR 103

Query: 279 AGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDT 458
           AGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLSV+PVR+GYWGNK+G  
Sbjct: 104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKP 163

Query: 459 HTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFA 638
           HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D YTSA GQTATL NFA
Sbjct: 164 HTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFA 223

Query: 639 KATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
           KATY AI  TY YL+PDLW  T  T++P+ E+  +L
Sbjct: 224 KATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYL 259
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
          Length = 277

 Score =  323 bits (827), Expect = 5e-88
 Identities = 162/218 (74%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
 Frame = +3

Query: 96  DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQ 272
           + KEW P TKLGRLVK  K+K+LEEIY+YS+PIKE+EIID+FL   LKDEVL I PVQKQ
Sbjct: 41  EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQ 100

Query: 273 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 452
           TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS+IPVR+GYWGNK+G
Sbjct: 101 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIG 160

Query: 453 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 632
             HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 161 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 220

Query: 633 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
           FAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 221 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
          Length = 293

 Score =  321 bits (823), Expect = 1e-87
 Identities = 160/218 (73%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
 Frame = +3

Query: 96  DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 272
           + KEW P TKLGRLVK  K+K+LEEIY++S+PIKE+EIID+FL   LKDEVL I PVQKQ
Sbjct: 56  EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115

Query: 273 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 452
           TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175

Query: 453 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 632
             HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235

Query: 633 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
           FAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
 sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
          Length = 293

 Score =  321 bits (822), Expect = 2e-87
 Identities = 160/218 (73%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
 Frame = +3

Query: 96  DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 272
           + KEW P TKLGRLVK  K+K+LEEIY++S+PIKE+EIID+FL   LKDEVL I PVQKQ
Sbjct: 56  EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115

Query: 273 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 452
           TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175

Query: 453 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 632
             HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235

Query: 633 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
           FAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
          Length = 286

 Score =  319 bits (817), Expect = 7e-87
 Identities = 159/218 (72%), Positives = 180/218 (82%), Gaps = 1/218 (0%)
 Frame = +3

Query: 96  DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 272
           + KEW P TKLGRLVK  K+K+LEEIY++S+PIKE+EIID+FL   LKDEVL I PVQKQ
Sbjct: 49  EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 108

Query: 273 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 452
           TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS++PVR+GYWGNK+G
Sbjct: 109 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 168

Query: 453 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 632
             HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 169 KPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 228

Query: 633 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
           FAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 229 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 266
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
          Length = 272

 Score =  312 bits (799), Expect = 8e-85
 Identities = 155/219 (70%), Positives = 177/219 (80%)
 Frame = +3

Query: 90  EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQK 269
           EK++ EW P TKLGRLVK  K+ TLEEIY+ S+PIKE EIID     LKDEVL I PVQK
Sbjct: 52  EKET-EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPVQK 110

Query: 270 QTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKL 449
           QT AGQRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI  AKL+V+PVR+GYWGNK+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170

Query: 450 GDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLE 629
           G  HTVPCKVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D YT+A G TATL 
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230

Query: 630 NFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
           NFAKATY A++RTY YL+PDLW      ++P+  H ++L
Sbjct: 231 NFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
          Length = 202

 Score =  306 bits (784), Expect = 5e-83
 Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
 Frame = +3

Query: 114 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 290
           P TKLGRLVK  K+K+LEEIY++S+PIKE+EIID+FL   LKDEVL I PVQKQTRAGQR
Sbjct: 2   PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61

Query: 291 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 470
           TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS++PVR+GYWGNK+G  HTVP
Sbjct: 62  TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121

Query: 471 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 650
           CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181

Query: 651 MAIRRTYEYLSPDLWNAT 704
            AI +TY YL+PDLW  T
Sbjct: 182 DAISKTYSYLTPDLWKET 199
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
          Length = 253

 Score =  306 bits (783), Expect = 6e-83
 Identities = 142/217 (65%), Positives = 173/217 (79%)
 Frame = +3

Query: 96  DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 275
           + KEW P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ + PVQKQT
Sbjct: 30  EEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVVPVQKQT 89

Query: 276 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 455
           RAGQRTRFKA V +GD++GHVGLG+KCAKEVATAIRGAI   KLS++P+R+GYWG  LGD
Sbjct: 90  RAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGD 149

Query: 456 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENF 635
            HTVP KV+GKCGSV+VRL+PAPRG G+V APVTK+ L +AGI+D YT + G T TL NF
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209

Query: 636 AKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
            KA + A   TY  L+P+LW   P  Q P +E+A  L
Sbjct: 210 VKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
          Length = 285

 Score =  298 bits (763), Expect = 1e-80
 Identities = 140/218 (64%), Positives = 176/218 (80%), Gaps = 1/218 (0%)
 Frame = +3

Query: 96  DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 272
           + ++W P TKLGRLV AG +K +E+IY++S+P+KE +IID  + P LKDEV+ I PVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 273 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 452
           TRAGQRTRFKA V +GD NGHVGLGVKC+KEVATAIRGAI  AKLSV+PVR+GYWGNK+G
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169

Query: 453 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 632
             HTVPCKVTGKCGSV+VR++PAPRG+GIV A V KK+L  AGI DV+TS+ G T TL N
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229

Query: 633 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 746
           F KAT+  +++TY +L+P+ W  T  +++P+ EH  FL
Sbjct: 230 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFL 267
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,486,697
Number of Sequences: 369166
Number of extensions: 1845390
Number of successful extensions: 4699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4541
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)