Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H03
(583 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q44776|MRAY_BORBU Phospho-N-acetylmuramoyl-pentapeptide-... 32 1.1
sp|Q5UZE6|SYA_HALMA Alanyl-tRNA synthetase (Alanine--tRNA l... 32 1.1
sp|P58851|Y939_METKA Hypothetical UPF0204 protein MK0939 32 1.5
sp|Q6QHT9|CP19A_ANGJA Cytochrome P450 19A1 (Aromatase) (CYP... 32 1.5
sp|Q82GV2|FBIC_STRAW FO synthase (7,8-didemethyl-8-hydroxy-... 32 1.5
sp|P15172|MYOD1_HUMAN Myoblast determination protein 1 (Myo... 30 5.7
sp|P70091|CP19A_ORENI Cytochrome P450 19A1 (Aromatase) (CYP... 30 5.7
sp|Q92087|CP19A_ORYLA Cytochrome P450 19A1 (Aromatase) (CYP... 29 7.4
sp|Q661W1|MRAY_BORGA Phospho-N-acetylmuramoyl-pentapeptide-... 29 9.7
sp|Q8BIE6|FRM4A_MOUSE FERM domain containing protein 4A 29 9.7
>sp|Q44776|MRAY_BORBU Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 351
Score = 32.0 bits (71), Expect = 1.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 366 GGAHVSILRWPFHFTSGISLGIYEVKFGAF 277
GG HVS++ +PF + I LG++ + FG F
Sbjct: 144 GGEHVSVIYFPFIKSFQIDLGLFYIPFGMF 173
>sp|Q5UZE6|SYA_HALMA Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 927
Score = 32.0 bits (71), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 268 RSSKSSKFDFIYSQ*DS*GEMEWPPQNRYMCTSTWTI*TGYKIPNVGWTWL 420
R ++ + F+ + DS GE E NRY T+ + TGY + WTW+
Sbjct: 217 RGAELATLVFMSMEQDSDGEYEMKDGNRYSPMDTYIVDTGYGLER--WTWM 265
>sp|P58851|Y939_METKA Hypothetical UPF0204 protein MK0939
Length = 279
Score = 31.6 bits (70), Expect = 1.5
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 158 ERRWENYHEHRCLPTLARRD-AIDFQREEDYMAFV-RKRDRPKAPNLTSYIP-NEIPEVK 328
ER +H L L D A + R+ D + F R R K P+LT ++P N PE K
Sbjct: 43 ERDGVRFHLTAALGDLIEEDEARELARKFDVIVFASRHESRTKKPSLTVHVPGNPTPEAK 102
Query: 329 WNGHRRIDTC-APPHG 373
+ G + ++ C A P G
Sbjct: 103 FGG-KPLEVCTADPAG 117
>sp|Q6QHT9|CP19A_ANGJA Cytochrome P450 19A1 (Aromatase) (CYPXIX) (Estrogen synthetase)
(P-450AROM)
Length = 511
Score = 31.6 bits (70), Expect = 1.5
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 84 YQNTIILWANANLYVTKALLGTYLQKDAGKIIMSIDVYLH*QEEMRLIFNEKKITWLL 257
+ N I LW Y KAL G LQ+ + S D +L EE+ + + I LL
Sbjct: 148 FNNNIELWKKVRTYFAKALTGPGLQRTVAICVASTDSHLDQLEELTDLSGQVDILNLL 205
>sp|Q82GV2|FBIC_STRAW FO synthase (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
Length = 861
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 212 RDAIDFQREEDYMAFVRKRDRPKAPNLTSYIPNEIPEV-KWNGHRRIDTCAPPHGQFKPG 388
R+ +D +D +A+VR + T +P+ P V W +R+ AP G
Sbjct: 144 REWLDAHGYDDTIAYVRAISI-RILEETGLLPHLNPGVMSWTDFQRLKPVAPSMGMMLET 202
Query: 389 TKFPMWDGPGYYGYYHEALDRHSAGEFRTL 478
T +W PG G +H + D+ A R L
Sbjct: 203 TATRLWSEPG--GPHHGSPDKEPAVRLRVL 230
>sp|P15172|MYOD1_HUMAN Myoblast determination protein 1 (Myogenic factor 3) (Myf-3)
Length = 319
Score = 29.6 bits (65), Expect = 5.7
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +2
Query: 41 DAYSKYSKQSDKVMIPEYNYP-MGERKSLCYEGAAWYIPSERRWENYHEHRCLPTLARRD 217
DA S S SD +M +Y+ P G R+ CYEGA Y+E P +
Sbjct: 197 DASSPRSNCSDGMM--DYSGPPSGARRRNCYEGA-----------YYNEAPSEPRPGKSA 243
Query: 218 AIDFQREEDYMAFVRKR---DRPKAPN-LTSYIPNEIPEVKWNGHRRIDTCAPPHGQ 376
A+ DY++ + +R + P AP L + +P+E P RR + AP G+
Sbjct: 244 AVS---SLDYLSSIVERISTESPAAPALLLADVPSESPP------RRQEAAAPSEGE 291
>sp|P70091|CP19A_ORENI Cytochrome P450 19A1 (Aromatase) (CYPXIX) (Estrogen synthetase)
(P-450AROM)
Length = 522
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 84 YQNTIILWANANLYVTKALLGTYLQKDAGKIIMSIDVYL 200
+ N + LW Y KAL G LQ+ + SI +L
Sbjct: 148 FNNNVTLWKKIRTYFAKALTGPNLQQTVDVCVSSIQAHL 186
>sp|Q92087|CP19A_ORYLA Cytochrome P450 19A1 (Aromatase) (CYPXIX) (Estrogen synthetase)
(P-450AROM)
Length = 518
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 84 YQNTIILWANANLYVTKALLGTYLQKDAGKIIMSIDVYL 200
+ N + LW Y TKAL G LQ+ + S +L
Sbjct: 148 FNNNVALWKKIRTYFTKALTGPNLQQTVEVCVTSTQTHL 186
>sp|Q661W1|MRAY_BORGA Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 351
Score = 28.9 bits (63), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 366 GGAHVSILRWPFHFTSGISLGIYEVKFGAF 277
G HVS++ +PF + I LG++ + FG F
Sbjct: 144 GSEHVSMIYFPFIKSFRIDLGLFYIPFGMF 173
>sp|Q8BIE6|FRM4A_MOUSE FERM domain containing protein 4A
Length = 1020
Score = 28.9 bits (63), Expect = 9.7
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 145 PSSAFVT*RFAFAHRIIVF--WYHYFIRLFTIFAVSISRHCLYLDNSSSK 2
P A VT R F H I WY + +I+A++IS+H YLD SK
Sbjct: 262 PRRASVT-RRTFGHSGIAVHTWYACPALIKSIWAMAISQHQFYLDRKQSK 310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,525,487
Number of Sequences: 369166
Number of extensions: 1736844
Number of successful extensions: 4102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4101
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)